Wall clock time and date at job start Fri Apr 10 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48501 * 109.46744 * 274.97847 * 3 2 1 5 5 H 1.48501 * 109.47061 * 34.97613 * 3 2 1 6 6 H 1.48500 * 109.47350 * 154.98019 * 3 2 1 7 7 C 1.37879 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99707 * 174.16265 * 7 2 1 9 9 C 1.50690 * 120.00230 * 354.44139 * 7 2 1 10 10 O 1.42898 * 110.28920 * 62.13265 * 9 7 2 11 11 C 1.54267 * 110.32371 * 300.01003 * 9 7 2 12 12 C 1.54384 * 105.05702 * 241.10162 * 11 9 7 13 13 N 1.48559 * 104.59865 * 23.85578 * 12 11 9 14 14 C 1.38352 * 110.99797 * 200.96037 * 13 12 11 15 15 N 1.32891 * 120.60511 * 62.77466 * 14 13 12 16 16 C 1.31766 * 120.80395 * 180.02562 * 15 14 13 17 17 N 1.31822 * 122.12113 * 0.02562 * 16 15 14 18 18 C 1.32399 * 121.13256 * 359.97438 * 17 16 15 19 19 C 1.39258 * 119.04457 * 359.72421 * 18 17 16 20 20 C 1.48376 * 120.95249 * 180.27436 * 19 18 17 21 21 N 1.34068 * 126.68058 * 185.54699 * 20 19 18 22 22 N 1.28985 * 107.26586 * 179.83375 * 21 20 19 23 23 N 1.28729 * 108.95094 * 0.44026 * 22 21 20 24 24 H 0.97005 * 125.33786 * 179.74187 * 23 22 21 25 25 N 1.28876 * 109.32806 * 359.72062 * 23 22 21 26 26 C 1.48829 * 104.23132 * 320.48714 * 13 12 11 27 27 H 0.96995 * 120.00216 * 0.02562 * 1 2 3 28 28 H 0.96690 * 114.00789 * 294.65277 * 10 9 7 29 29 H 1.08998 * 110.32197 * 359.97438 * 11 9 7 30 30 H 1.08997 * 110.32493 * 122.20675 * 11 9 7 31 31 H 1.09001 * 110.40421 * 142.63120 * 12 11 9 32 32 H 1.08996 * 110.41158 * 265.06848 * 12 11 9 33 33 H 1.08003 * 118.93927 * 179.97438 * 16 15 14 34 34 H 1.07996 * 120.47942 * 180.02562 * 18 17 16 35 35 H 1.08995 * 110.45314 * 280.77297 * 26 13 12 36 36 H 1.08999 * 110.49090 * 158.24642 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3913 2.1071 -1.3948 5 1 1.5030 2.6200 0.8026 6 1 3.5953 1.4122 0.5921 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 -0.0946 9 6 1.2564 -2.4960 0.1275 10 8 0.3697 -2.6680 -0.9798 11 6 0.4704 -2.5351 1.4543 12 6 1.0519 -3.7368 2.2297 13 7 2.4153 -3.9199 1.6690 14 6 2.8816 -5.2004 1.9075 15 7 2.2591 -6.2544 1.3902 16 6 2.6995 -7.4758 1.6153 17 7 3.7648 -7.7115 2.3551 18 6 4.4460 -6.7208 2.9096 19 6 4.0262 -5.4100 2.6977 20 6 4.7616 -4.2674 3.2937 21 7 4.4043 -2.9759 3.2524 22 7 5.3061 -2.3086 3.8889 23 7 6.2077 -3.1237 4.3132 24 1 6.9971 -2.8736 4.8184 25 7 5.8968 -4.3241 3.9620 26 6 2.2465 -3.6776 0.2103 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3456 -2.0185 -1.0156 29 1 0.6260 -1.6127 2.0139 30 1 -0.5915 -2.6873 1.2610 31 1 1.1060 -3.5115 3.2948 32 1 0.4477 -4.6277 2.0589 33 1 2.1702 -8.3106 1.1803 34 1 5.3176 -6.9260 3.5134 35 1 1.8285 -4.5588 -0.2763 36 1 3.1996 -3.4074 -0.2444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:50 Heat of formation + Delta-G solvation = 154.863993 kcal Electronic energy + Delta-G solvation = -25088.227682 eV Core-core repulsion = 21418.773051 eV Total energy + Delta-G solvation = -3669.454630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.24252 -41.12611 -38.34473 -35.27863 -34.40826 -33.77456 -32.85717 -32.02282 -31.15418 -28.84361 -27.97661 -25.53478 -24.99104 -24.25590 -23.18183 -22.22131 -20.77324 -19.49403 -19.21424 -17.49467 -17.38995 -16.94459 -16.86936 -16.14062 -15.04267 -14.79148 -14.74465 -14.32388 -13.81670 -13.77807 -13.53555 -13.13335 -12.33218 -12.12318 -11.98506 -11.86948 -11.37316 -11.31751 -11.13016 -11.03943 -11.02623 -10.82610 -10.67512 -10.52328 -10.35790 -10.27531 -9.88570 -9.36145 -9.11609 -8.97597 -8.46714 -8.17881 -8.05723 -6.09322 -4.11750 0.42304 0.98581 1.35409 2.34444 2.49952 3.32294 3.39397 3.46864 3.68352 3.74099 3.84303 4.08567 4.19058 4.40054 4.44434 4.97316 5.21623 5.24222 5.40760 5.48388 5.68780 5.76163 5.89057 6.08149 6.13765 6.19623 6.33150 6.48633 6.56610 6.81813 6.89589 6.97610 7.14113 7.49145 7.59733 7.67493 7.92778 8.03081 8.29668 8.40451 8.89499 9.49612 9.61308 10.99291 Molecular weight = 303.12amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.006053 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.217837 B = 4624.943102 C = 6152.938346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.255 3.745 10 O -0.593 6.593 11 C -0.118 4.118 12 C 0.047 3.953 13 N -0.444 5.444 14 C 0.389 3.611 15 N -0.543 5.543 16 C 0.317 3.683 17 N -0.532 5.532 18 C 0.186 3.814 19 C -0.103 4.103 20 C 0.226 3.774 21 N -0.197 5.197 22 N -0.056 5.056 23 N -0.237 5.237 24 H 0.471 0.529 25 N -0.304 5.304 26 C 0.061 3.939 27 H 0.265 0.735 28 H 0.383 0.617 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.198 0.802 34 H 0.176 0.824 35 H 0.054 0.946 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -10.385 8.881 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.215 3.785 10 O -0.402 6.402 11 C -0.157 4.157 12 C -0.079 4.079 13 N -0.168 5.168 14 C 0.150 3.850 15 N -0.260 5.260 16 C 0.028 3.972 17 N -0.246 5.246 18 C 0.018 3.982 19 C -0.113 4.113 20 C -0.056 4.056 21 N -0.069 5.069 22 N -0.052 5.052 23 N -0.081 5.081 24 H 0.324 0.676 25 N -0.157 5.157 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.233 0.767 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.215 0.785 34 H 0.193 0.807 35 H 0.073 0.927 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.910 -10.494 8.725 16.299 hybrid contribution 0.482 1.279 0.443 1.437 sum 9.392 -9.216 9.169 16.037 Atomic orbital electron populations 1.69662 1.05927 1.27209 1.51342 1.24943 0.94889 0.99274 0.94198 0.86502 0.80282 0.83032 0.77767 1.20930 1.21202 1.19585 1.21577 0.93801 0.90277 1.49242 0.92059 1.19194 0.85657 0.90866 0.82789 1.86097 1.44730 1.58673 1.50663 1.22885 0.98174 0.95902 0.98697 1.23194 0.85874 0.99497 0.99327 1.63671 1.25255 1.13985 1.13862 1.20802 0.88001 0.90467 0.85751 1.68837 1.33048 1.00276 1.23851 1.24988 0.89086 0.93584 0.89570 1.68500 1.08876 1.35816 1.11364 1.23238 0.96551 0.86115 0.92250 1.18743 0.97589 0.91319 1.03650 1.22917 0.90826 0.92837 0.98974 1.76710 1.16766 1.01470 1.11984 1.79163 0.96053 1.20642 1.09348 1.47744 1.21165 1.01700 1.37533 0.67564 1.74788 1.16672 1.05958 1.18321 1.23143 1.00570 0.98953 0.83852 0.92559 0.76651 0.90234 0.92581 0.91230 0.93601 0.78523 0.80711 0.92748 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 10.93 55.43 0.61 -23.65 16 2 C 0.07 1.83 4.96 -17.82 -0.09 1.74 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.91 8.12 -34.44 -0.28 -14.19 16 8 H 0.06 1.71 7.53 -52.48 -0.40 1.32 16 9 C 0.25 6.37 1.05 -90.39 -0.09 6.28 16 10 O -0.59 -15.49 12.93 -35.23 -0.46 -15.95 16 11 C -0.12 -2.73 5.57 -25.34 -0.14 -2.87 16 12 C 0.05 0.93 6.41 -2.18 -0.01 0.92 16 13 N -0.44 -8.94 3.78 -168.13 -0.64 -9.57 16 14 C 0.39 6.85 5.52 -154.65 -0.85 6.00 16 15 N -0.54 -8.87 8.95 -13.60 -0.12 -9.00 16 16 C 0.32 4.13 12.27 -92.15 -1.13 3.00 16 17 N -0.53 -6.83 10.42 -14.40 -0.15 -6.98 16 18 C 0.19 2.35 10.98 -16.93 -0.19 2.16 16 19 C -0.10 -1.59 5.92 -104.43 -0.62 -2.21 16 20 C 0.23 3.55 7.92 -156.29 -1.24 2.31 16 21 N -0.20 -3.58 11.11 32.14 0.36 -3.22 16 22 N -0.06 -0.86 13.47 60.35 0.81 -0.05 16 23 N -0.24 -2.58 7.90 60.35 0.48 -2.10 16 24 H 0.47 2.59 8.96 -340.35 -3.05 -0.46 16 25 N -0.30 -3.85 12.19 32.16 0.39 -3.45 16 26 C 0.06 1.36 5.70 -2.03 -0.01 1.35 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.38 10.05 7.32 45.56 0.33 10.38 16 29 H 0.08 2.01 7.26 -51.93 -0.38 1.63 16 30 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 33 H 0.20 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.18 1.70 7.97 -52.49 -0.42 1.28 16 35 H 0.05 1.22 7.23 -51.93 -0.38 0.84 16 36 H 0.08 1.77 7.67 -51.93 -0.40 1.37 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -31.53 310.98 -9.18 -40.71 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.47 Total: 7.76 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -4.66 Total: 4.49 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 1.74 Total: -58.04 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.46 Total: -15.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.53 -9.18 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.576 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds