Wall clock time and date at job start Fri Apr 10 2020 14:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48501 * 109.46744 * 274.97847 * 3 2 1 5 5 H 1.48501 * 109.47061 * 34.97613 * 3 2 1 6 6 H 1.48500 * 109.47350 * 154.98019 * 3 2 1 7 7 C 1.37879 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99707 * 174.16265 * 7 2 1 9 9 C 1.50690 * 120.00230 * 354.44139 * 7 2 1 10 10 O 1.42898 * 110.28920 * 62.13265 * 9 7 2 11 11 C 1.54267 * 110.32371 * 300.01003 * 9 7 2 12 12 C 1.54384 * 105.05702 * 241.10162 * 11 9 7 13 13 N 1.48559 * 104.59865 * 23.85578 * 12 11 9 14 14 C 1.38352 * 110.99797 * 200.96037 * 13 12 11 15 15 N 1.32891 * 120.60511 * 62.77466 * 14 13 12 16 16 C 1.31766 * 120.80395 * 180.02562 * 15 14 13 17 17 N 1.31822 * 122.12113 * 0.02562 * 16 15 14 18 18 C 1.32399 * 121.13256 * 359.97438 * 17 16 15 19 19 C 1.39258 * 119.04457 * 359.72421 * 18 17 16 20 20 C 1.48376 * 120.95249 * 180.27436 * 19 18 17 21 21 N 1.34068 * 126.68058 * 185.54699 * 20 19 18 22 22 N 1.28985 * 107.26586 * 179.83375 * 21 20 19 23 23 N 1.28729 * 108.95094 * 0.44026 * 22 21 20 24 24 H 0.97005 * 125.33786 * 179.74187 * 23 22 21 25 25 N 1.28876 * 109.32806 * 359.72062 * 23 22 21 26 26 C 1.48829 * 104.23132 * 320.48714 * 13 12 11 27 27 H 0.96995 * 120.00216 * 0.02562 * 1 2 3 28 28 H 0.96690 * 114.00789 * 294.65277 * 10 9 7 29 29 H 1.08998 * 110.32197 * 359.97438 * 11 9 7 30 30 H 1.08997 * 110.32493 * 122.20675 * 11 9 7 31 31 H 1.09001 * 110.40421 * 142.63120 * 12 11 9 32 32 H 1.08996 * 110.41158 * 265.06848 * 12 11 9 33 33 H 1.08003 * 118.93927 * 179.97438 * 16 15 14 34 34 H 1.07996 * 120.47942 * 180.02562 * 18 17 16 35 35 H 1.08995 * 110.45314 * 280.77297 * 26 13 12 36 36 H 1.08999 * 110.49090 * 158.24642 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3913 2.1071 -1.3948 5 1 1.5030 2.6200 0.8026 6 1 3.5953 1.4122 0.5921 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 -0.0946 9 6 1.2564 -2.4960 0.1275 10 8 0.3697 -2.6680 -0.9798 11 6 0.4704 -2.5351 1.4543 12 6 1.0519 -3.7368 2.2297 13 7 2.4153 -3.9199 1.6690 14 6 2.8816 -5.2004 1.9075 15 7 2.2591 -6.2544 1.3902 16 6 2.6995 -7.4758 1.6153 17 7 3.7648 -7.7115 2.3551 18 6 4.4460 -6.7208 2.9096 19 6 4.0262 -5.4100 2.6977 20 6 4.7616 -4.2674 3.2937 21 7 4.4043 -2.9759 3.2524 22 7 5.3061 -2.3086 3.8889 23 7 6.2077 -3.1237 4.3132 24 1 6.9971 -2.8736 4.8184 25 7 5.8968 -4.3241 3.9620 26 6 2.2465 -3.6776 0.2103 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3456 -2.0185 -1.0156 29 1 0.6260 -1.6127 2.0139 30 1 -0.5915 -2.6873 1.2610 31 1 1.1060 -3.5115 3.2948 32 1 0.4477 -4.6277 2.0589 33 1 2.1702 -8.3106 1.1803 34 1 5.3176 -6.9260 3.5134 35 1 1.8285 -4.5588 -0.2763 36 1 3.1996 -3.4074 -0.2444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592673853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:49 Heat of formation + Delta-G solvation = 130.905218 kcal Electronic energy + Delta-G solvation = -25089.266612 eV Core-core repulsion = 21418.773051 eV Total energy + Delta-G solvation = -3670.493561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.34290 -42.31171 -39.97700 -37.00217 -35.54307 -34.90730 -34.22257 -34.09227 -32.38472 -30.42173 -29.81766 -26.87906 -26.52778 -25.54761 -24.52461 -23.33185 -22.35151 -21.39445 -20.28120 -19.02945 -18.73355 -18.52099 -18.03405 -17.24980 -16.79666 -16.43910 -15.99287 -15.97338 -15.63576 -15.01324 -14.77021 -14.62813 -14.16304 -13.89940 -13.60107 -13.19007 -13.04089 -12.97538 -12.51259 -12.47451 -12.41422 -12.36989 -12.19178 -12.15127 -11.99334 -11.90392 -11.62947 -10.97717 -10.55045 -10.48497 -10.17855 -10.11419 -9.69265 -8.15656 -6.24599 -0.68067 -0.15729 0.25765 1.33519 1.41359 1.43950 1.49181 1.55498 2.43795 2.45723 2.62771 2.65158 2.99568 3.12614 3.16018 3.29617 3.68556 3.93158 4.17206 4.20308 4.26762 4.37156 4.39494 4.48412 4.55938 4.64421 4.75379 4.97355 5.14450 5.18549 5.28456 5.62581 5.68430 5.71049 5.80945 5.83767 6.13760 6.26954 6.77226 6.93584 7.28483 7.40757 7.51716 8.91491 Molecular weight = 303.12amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.006053 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.217837 B = 4624.943102 C = 6152.938346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.242 3.758 10 O -0.600 6.600 11 C -0.107 4.107 12 C 0.059 3.941 13 N -0.445 5.445 14 C 0.363 3.637 15 N -0.565 5.565 16 C 0.321 3.679 17 N -0.525 5.525 18 C 0.204 3.796 19 C -0.110 4.110 20 C 0.212 3.788 21 N -0.248 5.248 22 N -0.075 5.075 23 N -0.201 5.201 24 H 0.493 0.507 25 N -0.282 5.282 26 C 0.075 3.925 27 H 0.268 0.732 28 H 0.378 0.622 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.235 0.765 34 H 0.209 0.791 35 H 0.051 0.949 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 -11.811 10.101 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.169 4.169 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.063 0.937 9 C 0.202 3.798 10 O -0.409 6.409 11 C -0.146 4.146 12 C -0.067 4.067 13 N -0.169 5.169 14 C 0.124 3.876 15 N -0.282 5.282 16 C 0.033 3.967 17 N -0.238 5.238 18 C 0.036 3.964 19 C -0.119 4.119 20 C -0.069 4.069 21 N -0.119 5.119 22 N -0.070 5.070 23 N -0.051 5.051 24 H 0.352 0.648 25 N -0.136 5.136 26 C -0.052 4.052 27 H 0.077 0.923 28 H 0.229 0.771 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.225 0.775 35 H 0.070 0.930 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.396 -11.921 9.957 18.690 hybrid contribution 0.141 1.623 0.122 1.634 sum 10.537 -10.299 10.079 17.851 Atomic orbital electron populations 1.69724 1.06571 1.27902 1.51115 1.25541 0.95722 1.01756 0.93851 0.85653 0.78922 0.79854 0.77835 1.20437 1.20394 1.20107 1.21705 0.93211 0.91852 1.50190 0.93709 1.19378 0.86074 0.91279 0.83083 1.86089 1.44762 1.58465 1.51551 1.22621 0.97823 0.96199 0.97911 1.23025 0.86242 0.98190 0.99288 1.63521 1.24864 1.16721 1.11795 1.20711 0.89380 0.89739 0.87785 1.68774 1.33812 1.01079 1.24553 1.25701 0.88945 0.93299 0.88749 1.68637 1.08666 1.35496 1.11024 1.23722 0.96732 0.84717 0.91271 1.18830 0.97009 0.92446 1.03622 1.23016 0.91687 0.92362 0.99822 1.76677 1.18528 1.02895 1.13781 1.79086 0.96722 1.21073 1.10087 1.47810 1.20838 1.00841 1.35624 0.64798 1.74756 1.15319 1.06181 1.17343 1.22824 0.98828 0.97640 0.85886 0.92303 0.77147 0.92875 0.93065 0.90213 0.92791 0.74956 0.77476 0.93024 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.91 10.93 21.45 0.23 -49.67 16 2 C 0.03 1.70 4.96 84.66 0.42 2.12 16 3 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.53 -29.83 8.12 25.60 0.21 -29.62 16 8 H 0.04 2.60 7.53 -2.91 -0.02 2.58 16 9 C 0.24 12.44 1.05 -10.64 -0.01 12.43 16 10 O -0.60 -32.24 12.93 -148.98 -1.93 -34.17 16 11 C -0.11 -5.08 5.57 31.49 0.18 -4.91 16 12 C 0.06 2.36 6.41 86.45 0.55 2.92 16 13 N -0.45 -18.14 3.78 -685.84 -2.60 -20.74 16 14 C 0.36 12.53 5.52 133.51 0.74 13.27 16 15 N -0.56 -17.71 8.95 -196.95 -1.76 -19.47 16 16 C 0.32 7.52 12.27 180.88 2.22 9.74 16 17 N -0.52 -11.79 10.42 -199.47 -2.08 -13.87 16 18 C 0.20 4.52 10.98 84.85 0.93 5.45 16 19 C -0.11 -3.20 5.92 -19.74 -0.12 -3.32 16 20 C 0.21 6.40 7.92 137.34 1.09 7.48 16 21 N -0.25 -8.96 11.11 -52.22 -0.58 -9.54 16 22 N -0.07 -2.22 13.47 37.02 0.50 -1.72 16 23 N -0.20 -3.94 7.90 37.02 0.29 -3.65 16 24 H 0.49 4.07 8.96 -347.52 -3.12 0.95 16 25 N -0.28 -6.43 12.19 -52.16 -0.64 -7.07 16 26 C 0.07 3.45 5.70 86.40 0.49 3.94 16 27 H 0.27 13.95 8.31 -92.71 -0.77 13.17 16 28 H 0.38 20.49 7.32 -74.06 -0.54 19.95 16 29 H 0.05 2.77 7.26 -2.39 -0.02 2.75 16 30 H 0.05 2.42 7.98 -2.39 -0.02 2.40 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.05 2.07 7.56 -2.39 -0.02 2.05 16 33 H 0.23 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.21 3.15 7.97 -2.91 -0.02 3.13 16 35 H 0.05 2.36 7.23 -2.39 -0.02 2.34 16 36 H 0.06 2.94 7.67 -2.39 -0.02 2.92 16 Total: -1.00 -69.14 310.98 -2.32 -71.45 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -2.49 Total: 22.58 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.70 Total: 19.51 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.63 Total: -125.73 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.93 Total: -34.17 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.14 -2.32 -71.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.358 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds