Wall clock time and date at job start Fri Apr 10 2020 14:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48505 * 109.46949 * 240.00090 * 3 2 1 5 5 H 1.48493 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47026 * 120.00485 * 3 2 1 7 7 C 1.38817 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99829 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49090 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11445 * 155.35293 * 10 9 7 12 12 N 1.46500 * 113.73867 * 137.94871 * 11 10 9 13 13 C 1.34780 * 119.99979 * 156.92250 * 12 11 10 14 14 O 1.21695 * 119.99715 * 0.02562 * 13 12 11 15 15 C 1.46722 * 119.99886 * 179.97438 * 13 12 11 16 16 C 1.36670 * 126.02115 * 180.02562 * 15 13 12 17 17 C 1.40810 * 107.05454 * 179.77088 * 16 15 13 18 18 C 1.48504 * 126.28587 * 180.27336 * 17 16 15 19 19 N 1.34037 * 126.66976 * 359.83869 * 18 17 16 20 20 N 1.28986 * 107.26486 * 179.83337 * 19 18 17 21 21 N 1.28730 * 108.93981 * 0.43193 * 20 19 18 22 22 H 0.97002 * 125.33712 * 179.74255 * 21 20 19 23 23 N 1.28871 * 109.31828 * 359.72497 * 21 20 19 24 24 C 1.36562 * 107.42939 * 0.37957 * 17 16 15 25 25 N 1.34845 * 108.61210 * 359.61550 * 24 17 16 26 26 H 0.97004 * 125.52252 * 180.21945 * 25 24 17 27 27 C 1.47812 * 134.45538 * 359.86201 * 9 7 2 28 28 H 0.96994 * 119.99761 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.76692 * 41.05296 * 10 9 7 30 30 H 1.08999 * 113.76421 * 269.65751 * 10 9 7 31 31 H 1.08993 * 113.74223 * 269.15544 * 11 10 9 32 32 H 0.97000 * 120.00038 * 336.92531 * 12 11 10 33 33 H 1.08002 * 126.47673 * 359.97438 * 16 15 13 34 34 H 1.08002 * 125.69527 * 179.88691 * 24 17 16 35 35 H 1.08996 * 113.76566 * 90.38508 * 27 9 7 36 36 H 1.08998 * 113.83970 * 318.92278 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8102 -0.0019 11 6 0.3467 -4.0833 0.6374 12 7 -0.3333 -5.2614 0.0935 13 6 -1.2737 -5.8936 0.8233 14 8 -1.5582 -5.4854 1.9338 15 6 -1.9550 -7.0732 0.2783 16 6 -2.9228 -7.8046 0.9077 17 6 -3.2989 -8.8367 0.0267 18 6 -4.3262 -9.8785 0.2810 19 7 -5.0677 -10.0180 1.3889 20 7 -5.8370 -11.0376 1.2088 21 7 -5.6001 -11.5398 0.0474 22 1 -6.0433 -12.3161 -0.3291 23 7 -4.6821 -10.8491 -0.5366 24 6 -2.5438 -8.7052 -1.1035 25 7 -1.7322 -7.6383 -0.9571 26 1 -1.0945 -7.3207 -1.6155 27 6 -0.1057 -2.7571 0.0001 28 1 -0.4849 0.8400 0.0004 29 1 2.5621 -4.0326 0.6538 30 1 1.8327 -4.2346 -0.9996 31 1 0.3584 -4.0646 1.7271 32 1 -0.1067 -5.5865 -0.7919 33 1 -3.3257 -7.6232 1.8932 34 1 -2.5919 -9.3459 -1.9716 35 1 -0.5311 -2.8714 -0.9969 36 1 -0.7188 -2.1406 0.6574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:52 Heat of formation + Delta-G solvation = 165.830389 kcal Electronic energy + Delta-G solvation = -22898.584089 eV Core-core repulsion = 19229.604997 eV Total energy + Delta-G solvation = -3668.979092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.29654 -42.48708 -40.62906 -39.03185 -35.40598 -35.17100 -34.48129 -33.75923 -31.86948 -30.62282 -29.24400 -26.62415 -25.74720 -25.58200 -24.79418 -23.46423 -21.49994 -21.22893 -21.14140 -20.19504 -19.30637 -18.77657 -17.99578 -17.41737 -16.98720 -16.69095 -16.23080 -15.83670 -15.73255 -15.02199 -14.96355 -14.81364 -14.54321 -14.37972 -13.70154 -13.49852 -13.31810 -13.20844 -13.03117 -12.80297 -12.63850 -12.34309 -12.31707 -12.02506 -12.01689 -11.97865 -11.53972 -11.21352 -10.87741 -10.10730 -9.88824 -9.24420 -8.97560 -7.91891 -5.27296 0.14366 0.43549 0.65618 1.46045 1.50112 1.56034 1.56394 1.96172 2.04076 2.11111 2.37696 2.49662 2.94078 3.25500 3.30008 3.39711 3.83417 3.85730 4.22671 4.29154 4.30971 4.39471 4.50988 4.57705 4.74476 4.88917 4.91483 5.03096 5.10654 5.23598 5.45866 5.49110 5.60867 5.71054 5.75020 5.89665 6.38478 6.58319 6.88009 7.17877 7.28282 7.58432 8.50589 9.24682 Molecular weight = 303.12amu Principal moments of inertia in cm(-1) A = 0.047269 B = 0.002294 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.213072 B =12202.428803 C =12381.839426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.983 3.017 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.235 4.235 8 H 0.091 0.909 9 N -0.640 5.640 10 C 0.124 3.876 11 C 0.121 3.879 12 N -0.698 5.698 13 C 0.586 3.414 14 O -0.576 6.576 15 C -0.056 4.056 16 C -0.077 4.077 17 C -0.147 4.147 18 C 0.253 3.747 19 N -0.310 5.310 20 N -0.064 5.064 21 N -0.203 5.203 22 H 0.493 0.507 23 N -0.298 5.298 24 C 0.121 3.879 25 N -0.508 5.508 26 H 0.442 0.558 27 C 0.151 3.849 28 H 0.248 0.752 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.412 0.588 33 H 0.138 0.862 34 H 0.227 0.773 35 H 0.029 0.971 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 -26.619 -8.083 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.363 4.363 8 H 0.109 0.891 9 N -0.367 5.367 10 C -0.001 4.001 11 C 0.015 3.985 12 N -0.349 5.349 13 C 0.375 3.625 14 O -0.455 6.455 15 C -0.168 4.168 16 C -0.105 4.105 17 C -0.157 4.157 18 C -0.027 4.027 19 N -0.182 5.182 20 N -0.059 5.059 21 N -0.054 5.054 22 H 0.352 0.648 23 N -0.151 5.151 24 C -0.023 4.023 25 N -0.105 5.105 26 H 0.285 0.715 27 C 0.024 3.976 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.249 0.751 33 H 0.156 0.844 34 H 0.243 0.757 35 H 0.047 0.953 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.753 -26.172 -7.000 27.921 hybrid contribution 0.395 1.064 -0.840 1.412 sum -6.358 -25.108 -7.840 27.061 Atomic orbital electron populations 1.70026 1.06668 1.25808 1.57918 1.25729 0.96556 1.01270 1.02791 0.85091 0.77058 0.78375 0.78434 1.19844 1.22363 1.20134 1.19389 0.90988 0.82852 1.43050 0.89083 1.46036 1.03341 1.00914 1.86423 1.23025 0.94751 0.83432 0.98900 1.23222 0.93210 0.83344 0.98761 1.45662 1.39311 1.29678 1.20225 1.17395 0.78927 0.81749 0.84471 1.90852 1.65633 1.67333 1.21665 1.19601 1.06781 1.00585 0.89839 1.20992 0.95831 0.93857 0.99776 1.16443 1.02495 0.98429 0.98294 1.22924 0.97667 0.94922 0.87216 1.76127 1.07193 1.11437 1.23443 1.78864 1.18458 1.05627 1.02958 1.47744 1.23946 1.24034 1.09657 0.64810 1.74837 1.08175 1.07415 1.24645 1.22434 0.90320 0.90225 0.99313 1.41759 1.32157 1.22735 1.13856 0.71521 1.22609 0.87344 0.91007 0.96599 0.94275 0.91613 0.91136 0.88871 0.75089 0.84428 0.75662 0.95326 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.82 11.39 21.65 0.25 -58.57 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.64 -32.15 3.70 -716.74 -2.65 -34.80 16 10 C 0.12 4.48 8.69 86.49 0.75 5.23 16 11 C 0.12 4.50 4.40 46.74 0.21 4.71 16 12 N -0.70 -19.11 5.37 -451.35 -2.42 -21.54 16 13 C 0.59 18.16 7.79 86.46 0.67 18.83 16 14 O -0.58 -23.85 16.49 -4.33 -0.07 -23.92 16 15 C -0.06 -1.30 7.00 40.08 0.28 -1.02 16 16 C -0.08 -1.94 10.56 22.53 0.24 -1.71 16 17 C -0.15 -2.92 6.10 -20.30 -0.12 -3.04 16 18 C 0.25 5.33 8.18 137.40 1.12 6.45 16 19 N -0.31 -7.71 12.54 -52.16 -0.65 -8.37 16 20 N -0.06 -1.24 13.47 37.02 0.50 -0.74 16 21 N -0.20 -2.36 7.90 37.02 0.29 -2.06 16 22 H 0.49 0.51 8.96 -347.54 -3.12 -2.61 16 23 N -0.30 -4.59 12.39 -52.11 -0.65 -5.23 16 24 C 0.12 1.39 11.84 83.84 0.99 2.38 16 25 N -0.51 -6.28 5.95 -184.12 -1.09 -7.38 16 26 H 0.44 2.22 8.16 -92.71 -0.76 1.46 16 27 C 0.15 7.25 7.33 86.44 0.63 7.88 16 28 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 31 H 0.09 3.93 7.50 -2.39 -0.02 3.91 16 32 H 0.41 7.53 7.81 -92.71 -0.72 6.80 16 33 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.23 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.03 1.80 7.16 -2.39 -0.02 1.79 16 Total: -1.00 -84.96 324.40 -1.75 -86.71 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.41 Total: 4.11 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 6.14 Total: 24.04 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -6.43 Total: -138.69 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -84.96 -1.75 -86.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.541 kcal (2) G-P(sol) polarization free energy of solvation -84.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds