Wall clock time and date at job start Fri Apr 10 2020 14:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99599 * 2 1 4 4 H 1.48501 * 109.47043 * 240.00042 * 3 2 1 5 5 H 1.48497 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46952 * 119.99974 * 3 2 1 7 7 C 1.37877 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00021 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64041 * 298.29846 * 9 7 2 11 11 C 1.54595 * 110.72799 * 61.44860 * 9 7 2 12 12 C 1.53992 * 105.13990 * 140.49440 * 11 9 7 13 13 N 1.47897 * 107.05753 * 1.22387 * 12 11 9 14 14 C 1.38981 * 111.00111 * 214.15300 * 13 12 11 15 15 C 1.39581 * 120.05034 * 59.87931 * 14 13 12 16 16 C 1.38328 * 118.00216 * 180.02562 * 15 14 13 17 17 C 1.39882 * 117.96631 * 0.02562 * 16 15 14 18 18 C 1.48403 * 120.08971 * 180.02562 * 17 16 15 19 19 N 1.34062 * 126.68070 * 359.97438 * 18 17 16 20 20 N 1.28984 * 107.26929 * 179.73799 * 19 18 17 21 21 N 1.28733 * 108.94881 * 0.43021 * 20 19 18 22 22 H 0.97001 * 125.34363 * 179.83155 * 21 20 19 23 23 N 1.28874 * 109.31714 * 359.55875 * 21 20 19 24 24 N 1.32552 * 119.81176 * 0.27061 * 17 16 15 25 25 N 1.28355 * 122.14042 * 359.42952 * 24 17 16 26 26 C 1.48527 * 105.82176 * 334.67315 * 13 12 11 27 27 H 0.96992 * 120.00718 * 359.97438 * 1 2 3 28 28 H 0.96699 * 114.00111 * 61.69922 * 10 9 7 29 29 H 1.09007 * 110.30794 * 21.57912 * 11 9 7 30 30 H 1.08999 * 110.39655 * 259.45583 * 11 9 7 31 31 H 1.09006 * 109.91474 * 241.87482 * 12 11 9 32 32 H 1.09000 * 110.08177 * 120.67516 * 12 11 9 33 33 H 1.07999 * 121.00600 * 0.04156 * 15 14 13 34 34 H 1.08002 * 121.01719 * 180.02562 * 16 15 14 35 35 H 1.08998 * 110.66580 * 157.64214 * 26 13 12 36 36 H 1.09000 * 110.66512 * 280.76846 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.4498 -2.6182 1.1777 11 6 0.3796 -2.6278 -1.2698 12 6 0.5040 -4.1026 -1.6953 13 7 1.3717 -4.7694 -0.7003 14 6 2.1472 -5.7561 -1.2975 15 6 3.0375 -5.4224 -2.3193 16 6 3.7880 -6.4379 -2.8841 17 6 3.6073 -7.7364 -2.3962 18 6 4.3884 -8.8614 -2.9677 19 7 5.2980 -8.7874 -3.9498 20 7 5.7477 -9.9802 -4.1459 21 7 5.1539 -10.7888 -3.3391 22 1 5.3104 -11.7446 -3.2865 23 7 4.3229 -10.1281 -2.6084 24 7 2.7330 -7.9598 -1.4253 25 7 2.0413 -7.0155 -0.8986 26 6 2.2242 -3.6983 -0.1240 27 1 -0.4851 0.8399 0.0004 28 1 -0.2284 -1.9342 1.2626 29 1 0.7578 -1.9741 -2.0559 30 1 -0.6589 -2.3855 -1.0442 31 1 0.9567 -4.1666 -2.6848 32 1 -0.4790 -4.5733 -1.7056 33 1 3.1378 -4.4021 -2.6587 34 1 4.4919 -6.2345 -3.6776 35 1 2.6005 -3.9918 0.8560 36 1 3.0471 -3.4578 -0.7970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606346580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:55 Heat of formation + Delta-G solvation = 134.877215 kcal Electronic energy + Delta-G solvation = -23844.434420 eV Core-core repulsion = 20174.113098 eV Total energy + Delta-G solvation = -3670.321322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.62110 -42.41689 -40.13952 -36.98848 -35.77643 -34.94473 -34.13901 -33.99552 -32.84406 -30.37767 -29.93197 -27.15421 -26.61349 -25.68046 -24.68501 -23.86435 -22.19537 -21.47564 -20.42052 -19.29866 -18.73838 -18.31065 -18.20469 -17.71091 -16.92669 -16.58639 -16.08250 -15.65399 -15.44786 -15.14301 -14.78941 -14.75448 -14.16788 -13.87019 -13.59751 -13.54663 -13.21699 -13.02666 -12.69849 -12.59856 -12.51762 -12.36551 -12.33690 -12.30502 -12.22568 -11.83362 -11.32684 -11.18657 -11.04556 -10.60065 -10.48272 -10.09756 -9.51438 -8.18135 -6.33959 -0.82873 -0.34975 0.02554 0.93779 1.23522 1.46390 1.49120 1.55194 2.00923 2.32832 2.39346 2.48590 2.81040 3.07787 3.32322 3.54464 3.66969 3.73810 3.84900 3.92972 4.04838 4.17966 4.26893 4.34805 4.50754 4.60079 4.73115 4.81021 4.88932 5.02377 5.15580 5.40821 5.51974 5.56870 5.64267 5.82721 6.00730 6.20218 6.71675 6.95530 7.37883 7.50065 7.51160 8.87307 Molecular weight = 303.12amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.003023 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.164902 B = 9258.889582 C = 9738.640453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.034 3.966 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.560 4.560 8 H 0.061 0.939 9 C 0.243 3.757 10 O -0.592 6.592 11 C -0.117 4.117 12 C 0.052 3.948 13 N -0.491 5.491 14 C 0.258 3.742 15 C -0.140 4.140 16 C -0.051 4.051 17 C 0.123 3.877 18 C 0.214 3.786 19 N -0.268 5.268 20 N -0.044 5.044 21 N -0.194 5.194 22 H 0.498 0.502 23 N -0.268 5.268 24 N -0.217 5.217 25 N -0.250 5.250 26 C 0.070 3.930 27 H 0.269 0.731 28 H 0.374 0.626 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.195 0.805 35 H 0.065 0.935 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 -15.166 -10.688 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.167 4.167 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.598 4.598 8 H 0.079 0.921 9 C 0.203 3.797 10 O -0.400 6.400 11 C -0.156 4.156 12 C -0.074 4.074 13 N -0.215 5.215 14 C 0.021 3.979 15 C -0.171 4.171 16 C -0.081 4.081 17 C -0.025 4.025 18 C -0.068 4.068 19 N -0.142 5.142 20 N -0.039 5.039 21 N -0.046 5.046 22 H 0.358 0.642 23 N -0.122 5.122 24 N -0.061 5.061 25 N -0.093 5.093 26 C -0.056 4.056 27 H 0.078 0.922 28 H 0.223 0.777 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.199 0.801 34 H 0.212 0.788 35 H 0.084 0.916 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.935 -17.222 -9.565 21.631 hybrid contribution 0.568 2.368 -0.889 2.592 sum 9.503 -14.854 -10.455 20.500 Atomic orbital electron populations 1.69798 1.06833 1.28270 1.49908 1.25635 0.95721 1.02092 0.93298 0.85623 0.78411 0.78892 0.78738 1.19204 1.21059 1.20405 1.21760 0.93704 0.91544 1.52792 0.92103 1.19562 0.87194 0.90665 0.82323 1.86161 1.51654 1.56076 1.46091 1.22756 1.00858 0.92474 0.99546 1.23018 0.96985 0.94721 0.92644 1.61600 1.18898 1.10312 1.30666 1.21936 0.92008 0.92785 0.91138 1.23242 0.94931 1.03355 0.95567 1.22520 0.97429 0.89391 0.98756 1.19642 0.96042 0.90687 0.96115 1.22621 0.98319 0.89965 0.95919 1.76074 1.10189 1.13351 1.14546 1.78874 1.16909 0.94698 1.13379 1.47881 1.22145 1.14615 1.19939 0.64192 1.75134 1.13375 1.05667 1.18010 1.73255 1.02169 1.24756 1.05915 1.73128 1.16841 0.98339 1.20991 1.23262 0.94598 0.88845 0.98931 0.92167 0.77720 0.91850 0.92734 0.91490 0.90482 0.80089 0.78831 0.91647 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.40 11.00 21.45 0.24 -46.17 16 2 C 0.03 1.68 5.28 84.66 0.45 2.13 16 3 Si 0.96 39.91 29.54 68.60 2.03 41.94 16 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -27.99 8.15 25.60 0.21 -27.78 16 8 H 0.06 2.97 7.78 -2.91 -0.02 2.95 16 9 C 0.24 11.40 0.95 -10.34 -0.01 11.39 16 10 O -0.59 -30.77 13.09 -148.98 -1.95 -32.72 16 11 C -0.12 -4.97 5.26 31.47 0.17 -4.81 16 12 C 0.05 1.85 6.51 86.45 0.56 2.42 16 13 N -0.49 -18.75 5.36 -688.83 -3.69 -22.45 16 14 C 0.26 8.66 5.93 133.14 0.79 9.45 16 15 C -0.14 -3.52 7.97 22.62 0.18 -3.34 16 16 C -0.05 -1.11 9.84 22.69 0.22 -0.88 16 17 C 0.12 3.26 6.84 42.14 0.29 3.55 16 18 C 0.21 5.00 8.05 137.35 1.11 6.11 16 19 N -0.27 -5.66 12.28 -52.21 -0.64 -6.30 16 20 N -0.04 -0.74 13.47 37.02 0.50 -0.24 16 21 N -0.19 -2.43 7.90 37.02 0.29 -2.14 16 22 H 0.50 0.95 8.96 -347.53 -3.12 -2.17 16 23 N -0.27 -5.56 12.39 -52.16 -0.65 -6.21 16 24 N -0.22 -7.10 11.44 -48.31 -0.55 -7.65 16 25 N -0.25 -9.12 11.53 -55.06 -0.63 -9.76 16 26 C 0.07 2.83 5.55 86.65 0.48 3.31 16 27 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 28 H 0.37 19.66 7.46 -74.06 -0.55 19.11 16 29 H 0.06 2.70 7.84 -2.38 -0.02 2.68 16 30 H 0.05 2.49 7.98 -2.39 -0.02 2.47 16 31 H 0.07 1.96 6.69 -2.38 -0.02 1.95 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.18 3.80 7.15 -2.91 -0.02 3.78 16 34 H 0.19 2.86 7.95 -2.91 -0.02 2.84 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.08 2.71 6.57 -2.39 -0.02 2.70 16 Total: -1.00 -64.83 312.62 -3.11 -67.94 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -2.49 Total: 22.19 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.44 Total: 1.56 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -5.14 Total: -100.90 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.95 Total: -32.72 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -64.83 -3.11 -67.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.821 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds