Wall clock time and date at job start Fri Apr 10 2020 14:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46938 * 2 1 4 4 C 1.50700 * 109.47078 * 119.99560 * 2 1 3 5 5 C 1.38252 * 119.96620 * 240.00358 * 4 2 1 6 6 C 1.38214 * 120.06999 * 179.97438 * 5 4 2 7 7 C 1.38410 * 120.00357 * 0.02562 * 6 5 4 8 8 F 1.35095 * 120.03950 * 180.02562 * 7 6 5 9 9 C 1.38652 * 119.92451 * 359.97438 * 7 6 5 10 10 F 1.35098 * 120.03296 * 180.02562 * 9 7 6 11 11 C 1.38218 * 119.96245 * 59.73037 * 4 2 1 12 12 S 1.81393 * 109.47399 * 239.99912 * 2 1 3 13 13 O 1.42099 * 108.57770 * 305.51509 * 12 2 1 14 14 O 1.42093 * 108.58136 * 174.48636 * 12 2 1 15 15 C 1.81404 * 101.92151 * 59.99813 * 12 2 1 16 16 C 1.53000 * 109.46946 * 180.02562 * 15 12 2 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46725 * 60.00489 * 21 19 17 23 23 H 1.48505 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47116 * 300.00464 * 21 19 17 25 25 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47443 * 300.00254 * 1 2 3 27 27 H 1.08997 * 109.47169 * 60.00300 * 1 2 3 28 28 H 1.08001 * 119.96606 * 359.97438 * 5 4 2 29 29 H 1.08004 * 120.00182 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.99790 * 359.97438 * 11 4 2 31 31 H 1.09002 * 109.47124 * 60.00027 * 15 12 2 32 32 H 1.09001 * 109.46975 * 300.00148 * 15 12 2 33 33 H 1.09001 * 109.47194 * 299.99756 * 16 15 12 34 34 H 1.08992 * 109.47399 * 59.99928 * 16 15 12 35 35 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8271 -0.0377 2.1401 6 6 3.2885 -0.6869 3.2696 7 6 2.9555 -2.0120 3.4909 8 9 3.4058 -2.6471 4.5950 9 6 2.1585 -2.6866 2.5787 10 9 1.8318 -3.9798 2.7928 11 6 1.6934 -2.0320 1.4514 12 16 2.1347 -0.8551 -1.4810 13 8 1.5480 -2.1484 -1.5284 14 8 3.5496 -0.7330 -1.5284 15 6 1.4229 0.1515 -2.8118 16 6 1.8333 -0.4300 -4.1662 17 6 1.2425 0.4066 -5.2717 18 1 0.6354 1.2672 -5.0322 19 6 1.4778 0.0740 -6.5889 20 7 2.2175 -0.9735 -6.8806 21 14 0.7449 1.1106 -7.9593 22 1 1.2442 2.5046 -7.8465 23 1 1.1433 0.5464 -9.2739 24 1 -0.7358 1.1045 -7.8467 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.0876 0.9962 1.9678 29 1 3.9096 -0.1605 3.9793 30 1 1.0685 -2.5549 0.7425 31 1 1.7894 1.1747 -2.7291 32 1 0.3361 0.1470 -2.7291 33 1 2.9202 -0.4258 -4.2492 34 1 1.4666 -1.4530 -4.2486 35 1 2.3834 -1.2073 -7.8073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190926645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:59 Heat of formation + Delta-G solvation = -147.400295 kcal Electronic energy + Delta-G solvation = -22424.040570 eV Core-core repulsion = 18571.238297 eV Total energy + Delta-G solvation = -3852.802273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.073 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.68269 -48.75261 -39.61868 -36.63951 -35.64191 -34.53077 -33.93306 -31.33086 -31.09945 -29.49340 -25.63963 -24.78529 -23.47437 -22.27086 -21.31728 -18.57318 -18.15709 -17.66905 -17.37691 -16.85266 -16.52729 -16.09387 -15.60202 -15.50566 -15.15937 -14.79418 -14.59072 -14.56606 -14.37778 -13.92904 -13.47006 -13.05534 -12.97683 -12.78400 -12.50764 -12.08460 -11.85950 -11.78053 -11.68767 -11.60222 -11.48903 -11.08677 -10.98318 -10.59578 -10.40661 -10.34511 -9.75256 -9.39954 -9.22632 -8.85839 -8.52320 -6.14479 -4.20940 0.12446 0.66040 0.69192 2.98975 3.08371 3.25264 3.30514 3.31841 3.45575 3.73022 4.01943 4.10611 4.21997 4.30926 4.35264 4.63765 4.73693 4.79499 4.92640 5.20369 5.22558 5.42949 5.43895 5.52366 5.53701 5.59131 5.61140 5.63771 5.84428 5.97077 6.40602 6.42224 7.29533 7.34803 7.77440 8.13530 8.82349 9.43863 10.96329 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.035833 B = 0.003247 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.205226 B = 8622.365295 C = 8789.131318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.548 4.548 3 H 0.147 0.853 4 C -0.053 4.053 5 C -0.082 4.082 6 C -0.123 4.123 7 C 0.068 3.932 8 F -0.128 7.128 9 C 0.077 3.923 10 F -0.124 7.124 11 C -0.130 4.130 12 S 2.394 3.606 13 O -0.935 6.935 14 O -0.937 6.937 15 C -0.569 4.569 16 C 0.029 3.971 17 C -0.523 4.523 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.166 0.834 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 3.522 19.965 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.653 4.653 3 H 0.165 0.835 4 C -0.054 4.054 5 C -0.101 4.101 6 C -0.142 4.142 7 C 0.047 3.953 8 F -0.106 7.106 9 C 0.057 3.943 10 F -0.102 7.102 11 C -0.149 4.149 12 S 2.579 3.421 13 O -0.933 6.933 14 O -0.934 6.934 15 C -0.702 4.702 16 C -0.010 4.010 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.184 0.816 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.345 2.573 19.882 20.093 hybrid contribution -0.744 0.917 -0.373 1.238 sum -2.089 3.490 19.509 19.929 Atomic orbital electron populations 1.21734 0.88750 1.04620 1.04686 1.29416 1.07254 1.13395 1.15196 0.83515 1.18917 0.98075 0.92892 0.95553 1.21042 0.95894 1.00831 0.92362 1.21079 1.01573 0.92101 0.99469 1.17743 0.99921 0.92142 0.85466 1.91532 1.87302 1.81867 1.49940 1.17532 1.00497 0.80022 0.96242 1.91552 1.90889 1.33166 1.94618 1.21399 1.01452 0.94918 0.97156 1.09151 0.76726 0.78261 0.78007 1.93525 1.79267 1.35185 1.85285 1.93549 1.27415 1.87114 1.85342 1.30235 1.11927 1.13382 1.14679 1.18997 0.98219 0.97263 0.86513 1.20966 1.32646 1.12542 0.90138 0.92017 1.25065 0.95074 0.95292 0.98985 1.69945 1.37549 1.25804 1.19367 0.86528 0.79530 0.80334 0.80865 1.20058 1.21060 1.20049 0.90284 0.90397 0.89970 0.83582 0.83146 0.81646 0.85992 0.85787 0.94666 0.94544 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.75 37.16 0.33 -0.93 16 2 C -0.55 -5.90 2.94 -27.88 -0.08 -5.98 16 3 H 0.15 1.10 7.87 -51.92 -0.41 0.69 16 4 C -0.05 -0.61 4.78 -104.62 -0.50 -1.11 16 5 C -0.08 -0.77 9.67 -39.59 -0.38 -1.15 16 6 C -0.12 -1.13 10.02 -39.53 -0.40 -1.52 16 7 C 0.07 0.78 7.31 -39.36 -0.29 0.49 16 8 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 9 C 0.08 0.99 7.31 -39.37 -0.29 0.70 16 10 F -0.12 -1.70 17.18 2.25 0.04 -1.66 16 11 C -0.13 -1.65 8.54 -39.53 -0.34 -1.99 16 12 S 2.39 39.30 4.08 -107.50 -0.44 38.86 16 13 O -0.94 -17.70 16.22 -57.83 -0.94 -18.64 16 14 O -0.94 -18.61 18.10 -57.83 -1.05 -19.66 16 15 C -0.57 -9.93 5.29 37.16 0.20 -9.74 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 21 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H 0.08 0.74 7.28 -51.93 -0.38 0.36 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.64 6.56 -51.93 -0.34 0.30 16 28 H 0.15 0.93 7.94 -52.49 -0.42 0.51 16 29 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.17 2.13 6.27 -52.48 -0.33 1.80 16 31 H 0.12 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.12 1.83 6.87 -51.92 -0.36 1.47 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -34.22 320.54 -7.99 -42.21 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.89 Total: -1.33 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: -2.30 Total: -33.47 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.98 Total: -38.29 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 39.30 SS G_CDS: -0.44 Total: 38.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.22 -7.99 -42.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190926645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.191 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds