Wall clock time and date at job start Fri Apr 10 2020 14:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47158 * 158.54356 * 3 2 1 5 5 C 1.36946 * 119.99568 * 273.01439 * 4 3 2 6 6 H 1.08003 * 119.99414 * 187.50557 * 5 4 3 7 7 C 1.38809 * 119.99994 * 7.50962 * 5 4 3 8 8 N 1.31614 * 120.00425 * 27.07074 * 7 5 4 9 9 Si 1.86803 * 119.99746 * 207.07360 * 7 5 4 10 10 H 1.48506 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47332 * 119.99887 * 9 7 5 12 12 H 1.48496 * 109.46989 * 240.00214 * 9 7 5 13 13 S 1.65599 * 120.00063 * 93.01505 * 4 3 2 14 14 O 1.42098 * 104.27846 * 333.92826 * 13 4 3 15 15 O 1.42100 * 104.27537 * 206.07013 * 13 4 3 16 16 C 1.81401 * 104.45010 * 89.99950 * 13 4 3 17 17 C 1.50698 * 109.47190 * 179.97438 * 16 13 4 18 18 C 1.38359 * 119.84421 * 90.00137 * 17 16 13 19 19 C 1.37946 * 120.15172 * 180.02562 * 18 17 16 20 20 C 1.39636 * 119.84436 * 359.97438 * 19 18 17 21 21 C 1.43201 * 120.14780 * 180.02562 * 20 19 18 22 22 N 9.23236 * 123.29556 * 259.84779 * 4 1 2 23 23 C 1.39627 * 119.70082 * 0.28117 * 20 19 18 24 24 C 1.37949 * 119.84186 * 359.42139 * 23 20 19 25 25 H 4.40648 * 5.51372 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47125 * 38.54135 * 3 2 1 27 27 H 1.09000 * 109.46759 * 278.54133 * 3 2 1 28 28 H 0.96995 * 120.00091 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46884 * 59.99743 * 16 13 4 30 30 H 1.09002 * 109.46967 * 300.00345 * 16 13 4 31 31 H 1.08003 * 119.92415 * 0.02562 * 18 17 16 32 32 H 1.08001 * 120.08053 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.07936 * 179.70093 * 23 20 19 34 34 H 1.08003 * 119.92323 * 180.27789 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2864 -0.5052 5 6 3.3031 1.4733 -1.8513 6 1 3.7753 2.3735 -2.2162 7 6 2.8679 0.5059 -2.7465 8 7 1.8699 -0.2888 -2.4230 9 14 3.6988 0.3318 -4.4105 10 1 4.7858 1.3367 -4.5285 11 1 4.2708 -1.0326 -4.5379 12 1 2.7007 0.5527 -5.4876 13 16 3.4804 2.5135 0.5513 14 8 2.6577 2.2478 1.6790 15 8 3.3099 3.6964 -0.2175 16 6 5.2292 2.2717 0.9680 17 6 5.6678 3.3412 1.9349 18 6 5.5518 3.1275 3.2969 19 6 5.9508 4.1024 4.1877 20 6 6.4732 5.3067 3.7117 21 6 6.8900 6.3229 4.6306 22 7 7.2222 7.1252 5.3624 23 6 6.5825 5.5177 2.3358 24 6 6.1853 4.5318 1.4565 25 1 -1.0502 -0.0003 0.0003 26 1 3.0097 -0.8030 -0.6403 27 1 3.0094 -0.1518 1.0163 28 1 1.5656 -0.9646 -3.0487 29 1 5.8308 2.3335 0.0610 30 1 5.3615 1.2912 1.4255 31 1 5.1479 2.1954 3.6636 32 1 5.8594 3.9346 5.2506 33 1 6.9812 6.4488 1.9610 34 1 6.2735 4.6919 0.3920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311275884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:10 Heat of formation + Delta-G solvation = 61.332007 kcal Electronic energy + Delta-G solvation = -21678.927017 eV Core-core repulsion = 18285.865243 eV Total energy + Delta-G solvation = -3393.061775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.58048 -36.62221 -36.37856 -36.04782 -34.82808 -32.97175 -31.97659 -31.18411 -31.16555 -27.71933 -26.60905 -23.98324 -22.86830 -22.51535 -18.99991 -18.63979 -17.99973 -17.08899 -16.57303 -15.90697 -15.78196 -15.19700 -14.75192 -14.60527 -14.45867 -14.10052 -13.69908 -13.57287 -13.35668 -13.07370 -13.00668 -12.50691 -12.41611 -12.12776 -11.89655 -11.63992 -11.36559 -11.16723 -11.05480 -11.01748 -10.90291 -10.58283 -10.43084 -10.30518 -9.76027 -9.18120 -9.13575 -8.81559 -8.68690 -8.28840 -6.55560 -3.93499 0.51236 1.22693 1.24884 2.54348 2.85854 3.06383 3.16006 3.19277 3.54965 3.76415 3.79001 4.04046 4.25259 4.36003 4.62135 4.66113 4.69498 4.76894 5.03144 5.04033 5.25659 5.39968 5.58192 5.59997 5.69022 5.90544 5.94604 6.02278 6.15525 6.18185 6.45852 6.60774 6.71531 6.89070 7.18093 7.29081 7.35469 8.11662 8.61486 8.98119 9.01451 10.38323 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.004094 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.798270 B = 6838.411085 C = 7588.332224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.097 4.097 3 C 0.245 3.755 4 N -0.819 5.819 5 C -0.292 4.292 6 H 0.119 0.881 7 C 0.044 3.956 8 N -0.817 5.817 9 Si 0.904 3.096 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.280 1.280 13 S 2.528 3.472 14 O -0.972 6.972 15 O -0.961 6.961 16 C -0.633 4.633 17 C -0.031 4.031 18 C -0.120 4.120 19 C -0.065 4.065 20 C -0.047 4.047 21 C 0.263 3.737 22 N -0.429 5.429 23 C -0.064 4.064 24 C -0.118 4.118 25 H 0.198 0.802 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.274 0.726 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 0.083 4.927 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.099 4.099 3 C 0.120 3.880 4 N -0.645 5.645 5 C -0.431 4.431 6 H 0.137 0.863 7 C -0.167 4.167 8 N -0.454 5.454 9 Si 0.729 3.271 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.206 1.206 13 S 2.621 3.379 14 O -0.961 6.961 15 O -0.950 6.950 16 C -0.750 4.750 17 C -0.033 4.033 18 C -0.139 4.139 19 C -0.085 4.085 20 C -0.051 4.051 21 C -0.052 4.052 22 N -0.105 5.105 23 C -0.085 4.085 24 C -0.137 4.137 25 H 0.215 0.785 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.302 1.911 6.473 9.944 hybrid contribution 0.595 -0.965 -1.403 1.804 sum 7.897 0.945 5.070 9.432 Atomic orbital electron populations 1.24178 0.95317 1.01902 1.06829 1.22735 0.93989 0.98437 0.94772 1.17827 0.85245 0.88414 0.96562 1.53951 1.66366 1.27916 1.16314 1.19592 1.38483 1.05484 0.79580 0.86341 1.25242 0.95165 0.96332 0.99980 1.70242 1.18674 1.19334 1.37163 0.86247 0.80128 0.78626 0.82082 1.18860 1.20325 1.20588 1.10317 0.78991 0.75203 0.73414 1.93467 1.64806 1.85184 1.52651 1.93443 1.85518 1.47058 1.68996 1.30494 1.34477 1.03773 1.06213 1.19525 0.95970 0.94206 0.93640 1.21127 1.00382 1.00201 0.92144 1.21131 0.95702 0.91371 1.00320 1.15995 1.06602 0.91856 0.90674 1.25717 0.93257 0.93065 0.93141 1.81215 1.09703 1.10147 1.09405 1.21147 0.97276 0.99231 0.90814 1.21162 0.98895 0.92787 1.00870 0.78524 0.88191 0.91691 0.91511 0.84835 0.85512 0.84242 0.84767 0.84729 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.70 19.25 29.55 0.57 -5.13 16 2 C -0.10 -2.22 11.12 -37.12 -0.41 -2.63 16 3 C 0.24 5.13 5.03 -6.83 -0.03 5.10 16 4 N -0.82 -17.98 2.81 -62.77 -0.18 -18.15 16 5 C -0.29 -6.81 9.28 -15.06 -0.14 -6.95 16 6 H 0.12 2.71 7.40 -52.48 -0.39 2.32 16 7 C 0.04 1.01 4.86 -17.43 -0.08 0.93 16 8 N -0.82 -19.41 9.10 55.49 0.50 -18.90 16 9 Si 0.90 17.61 29.63 -169.99 -5.04 12.58 16 10 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 11 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 13 S 2.53 51.45 5.32 -107.50 -0.57 50.88 16 14 O -0.97 -21.65 16.95 -57.54 -0.98 -22.62 16 15 O -0.96 -22.49 16.88 -57.54 -0.97 -23.46 16 16 C -0.63 -9.35 6.30 36.00 0.23 -9.12 16 17 C -0.03 -0.43 5.15 -104.53 -0.54 -0.97 16 18 C -0.12 -1.49 9.68 -39.64 -0.38 -1.87 16 19 C -0.06 -0.71 9.76 -39.17 -0.38 -1.10 16 20 C -0.05 -0.55 5.73 -106.93 -0.61 -1.16 16 21 C 0.26 3.25 15.33 -22.49 -0.34 2.91 16 22 N -0.43 -6.09 18.53 41.82 0.78 -5.32 16 23 C -0.06 -0.72 9.76 -39.17 -0.38 -1.10 16 24 C -0.12 -1.51 9.68 -39.64 -0.38 -1.89 16 25 H 0.20 3.50 7.80 -54.08 -0.42 3.07 16 26 H 0.10 2.08 6.52 -51.93 -0.34 1.74 16 27 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 28 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 29 H 0.13 1.79 8.08 -51.92 -0.42 1.37 16 30 H 0.13 1.58 8.08 -51.92 -0.42 1.16 16 31 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -30.22 327.57 -7.63 -37.85 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.21 Total: 5.21 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.90 Total: -22.99 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 1.10 Total: -42.37 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.95 Total: -46.08 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.04 Total: 12.58 kcal Atomic # 16 Polarization: 51.45 SS G_CDS: -0.57 Total: 50.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.22 -7.63 -37.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311275884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.179 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds