Wall clock time and date at job start Fri Apr 10 2020 14:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47158 * 158.54356 * 3 2 1 5 5 C 1.36946 * 119.99568 * 273.01439 * 4 3 2 6 6 H 1.08003 * 119.99414 * 187.50557 * 5 4 3 7 7 C 1.38809 * 119.99994 * 7.50962 * 5 4 3 8 8 N 1.31614 * 120.00425 * 27.07074 * 7 5 4 9 9 Si 1.86803 * 119.99746 * 207.07360 * 7 5 4 10 10 H 1.48506 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47332 * 119.99887 * 9 7 5 12 12 H 1.48496 * 109.46989 * 240.00214 * 9 7 5 13 13 S 1.65599 * 120.00063 * 93.01505 * 4 3 2 14 14 O 1.42098 * 104.27846 * 333.92826 * 13 4 3 15 15 O 1.42100 * 104.27537 * 206.07013 * 13 4 3 16 16 C 1.81401 * 104.45010 * 89.99950 * 13 4 3 17 17 C 1.50698 * 109.47190 * 179.97438 * 16 13 4 18 18 C 1.38359 * 119.84421 * 90.00137 * 17 16 13 19 19 C 1.37946 * 120.15172 * 180.02562 * 18 17 16 20 20 C 1.39636 * 119.84436 * 359.97438 * 19 18 17 21 21 C 1.43201 * 120.14780 * 180.02562 * 20 19 18 22 22 N 9.23236 * 123.29556 * 259.84779 * 4 1 2 23 23 C 1.39627 * 119.70082 * 0.28117 * 20 19 18 24 24 C 1.37949 * 119.84186 * 359.42139 * 23 20 19 25 25 H 4.40648 * 5.51372 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47125 * 38.54135 * 3 2 1 27 27 H 1.09000 * 109.46759 * 278.54133 * 3 2 1 28 28 H 0.96995 * 120.00091 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46884 * 59.99743 * 16 13 4 30 30 H 1.09002 * 109.46967 * 300.00345 * 16 13 4 31 31 H 1.08003 * 119.92415 * 0.02562 * 18 17 16 32 32 H 1.08001 * 120.08053 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.07936 * 179.70093 * 23 20 19 34 34 H 1.08003 * 119.92323 * 180.27789 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2864 -0.5052 5 6 3.3031 1.4733 -1.8513 6 1 3.7753 2.3735 -2.2162 7 6 2.8679 0.5059 -2.7465 8 7 1.8699 -0.2888 -2.4230 9 14 3.6988 0.3318 -4.4105 10 1 4.7858 1.3367 -4.5285 11 1 4.2708 -1.0326 -4.5379 12 1 2.7007 0.5527 -5.4876 13 16 3.4804 2.5135 0.5513 14 8 2.6577 2.2478 1.6790 15 8 3.3099 3.6964 -0.2175 16 6 5.2292 2.2717 0.9680 17 6 5.6678 3.3412 1.9349 18 6 5.5518 3.1275 3.2969 19 6 5.9508 4.1024 4.1877 20 6 6.4732 5.3067 3.7117 21 6 6.8900 6.3229 4.6306 22 7 7.2222 7.1252 5.3624 23 6 6.5825 5.5177 2.3358 24 6 6.1853 4.5318 1.4565 25 1 -1.0502 -0.0003 0.0003 26 1 3.0097 -0.8030 -0.6403 27 1 3.0094 -0.1518 1.0163 28 1 1.5656 -0.9646 -3.0487 29 1 5.8308 2.3335 0.0610 30 1 5.3615 1.2912 1.4255 31 1 5.1479 2.1954 3.6636 32 1 5.8594 3.9346 5.2506 33 1 6.9812 6.4488 1.9610 34 1 6.2735 4.6919 0.3920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311275884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:06 Heat of formation + Delta-G solvation = 42.387420 kcal Electronic energy + Delta-G solvation = -21679.748516 eV Core-core repulsion = 18285.865243 eV Total energy + Delta-G solvation = -3393.883274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -40.57023 -37.98645 -37.81571 -37.67005 -36.70270 -34.13087 -33.50912 -32.74400 -32.11315 -28.97948 -28.16210 -25.56967 -23.81184 -23.64346 -20.25698 -19.95729 -19.62878 -18.79159 -18.11336 -17.41746 -16.94000 -16.50258 -16.28053 -16.00508 -15.53184 -15.22407 -15.12584 -14.91918 -14.50215 -14.22633 -14.12422 -14.01357 -13.54199 -13.44884 -13.37773 -13.08081 -12.93762 -12.72261 -12.66433 -12.60945 -12.19529 -12.04284 -11.96490 -11.85871 -11.29972 -10.85831 -10.44118 -10.04281 -10.00802 -9.69418 -8.02662 -5.67012 -0.76060 -0.09966 0.33347 1.51520 1.55895 1.56651 1.66440 1.84838 1.92947 2.47293 2.57117 2.72307 2.79049 2.82011 3.02937 3.24521 3.41138 3.52879 3.82289 3.93377 4.07348 4.22582 4.28704 4.47284 4.53335 4.62781 4.80212 5.01746 5.06067 5.14008 5.25200 5.35399 5.43129 5.61750 5.75496 5.76968 6.37800 6.54757 7.13833 7.34096 7.47475 8.94515 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.004094 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.798270 B = 6838.411085 C = 7588.332224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.131 4.131 3 C 0.251 3.749 4 N -0.867 5.867 5 C -0.346 4.346 6 H 0.106 0.894 7 C 0.001 3.999 8 N -0.884 5.884 9 Si 0.961 3.039 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.298 1.298 13 S 2.587 3.413 14 O -0.992 6.992 15 O -0.995 6.995 16 C -0.575 4.575 17 C -0.069 4.069 18 C -0.117 4.117 19 C -0.061 4.061 20 C -0.038 4.038 21 C 0.283 3.717 22 N -0.459 5.459 23 C -0.062 4.062 24 C -0.120 4.120 25 H 0.223 0.777 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.261 0.739 29 H 0.164 0.836 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.407 1.556 7.956 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.133 4.133 3 C 0.125 3.875 4 N -0.697 5.697 5 C -0.475 4.475 6 H 0.124 0.876 7 C -0.202 4.202 8 N -0.523 5.523 9 Si 0.787 3.213 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.225 1.225 13 S 2.686 3.314 14 O -0.983 6.983 15 O -0.985 6.985 16 C -0.704 4.704 17 C -0.072 4.072 18 C -0.136 4.136 19 C -0.081 4.081 20 C -0.042 4.042 21 C -0.032 4.032 22 N -0.135 5.135 23 C -0.083 4.083 24 C -0.140 4.140 25 H 0.240 0.760 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.182 0.818 30 H 0.189 0.811 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.236 3.318 9.282 14.210 hybrid contribution -0.002 -0.849 -1.591 1.803 sum 10.233 2.468 7.691 13.037 Atomic orbital electron populations 1.25026 0.96548 1.01690 1.06843 1.23836 0.95709 0.98823 0.94957 1.18015 0.83944 0.87823 0.97725 1.53087 1.75348 1.25639 1.15650 1.19370 1.40528 1.06784 0.80811 0.87620 1.25684 0.95508 0.97297 1.01704 1.70354 1.22035 1.22327 1.37589 0.85385 0.78708 0.78425 0.78788 1.18254 1.20179 1.22492 1.05304 0.79737 0.73534 0.72865 1.93495 1.65862 1.85227 1.53681 1.93462 1.86567 1.48248 1.70238 1.29716 1.24151 1.07388 1.09138 1.19539 0.99240 0.94341 0.94070 1.21427 0.99354 1.01262 0.91527 1.21436 0.94433 0.90532 1.01734 1.16144 1.05662 0.91685 0.90689 1.25725 0.92404 0.92535 0.92521 1.81262 1.10652 1.11141 1.10474 1.21404 0.96508 0.99884 0.90472 1.21406 0.98199 0.92493 1.01856 0.76009 0.88539 0.88771 0.92893 0.81815 0.81126 0.82306 0.82026 0.82314 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.75 19.25 74.32 1.43 -11.32 16 2 C -0.13 -6.24 11.12 31.13 0.35 -5.89 16 3 C 0.25 10.69 5.03 84.58 0.43 11.11 16 4 N -0.87 -38.32 2.81 -352.50 -0.99 -39.31 16 5 C -0.35 -16.84 9.28 84.03 0.78 -16.06 16 6 H 0.11 5.08 7.40 -2.91 -0.02 5.06 16 7 C 0.00 0.05 4.86 84.86 0.41 0.47 16 8 N -0.88 -45.68 9.10 21.65 0.20 -45.48 16 9 Si 0.96 38.99 29.63 68.60 2.03 41.02 16 10 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 11 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.30 -12.61 7.11 99.48 0.71 -11.90 16 13 S 2.59 99.13 5.32 -56.49 -0.30 98.83 16 14 O -0.99 -41.64 16.95 -127.65 -2.16 -43.80 16 15 O -0.99 -45.29 16.88 -127.65 -2.16 -47.44 16 16 C -0.57 -13.74 6.30 71.24 0.45 -13.29 16 17 C -0.07 -1.53 5.15 -19.81 -0.10 -1.63 16 18 C -0.12 -2.18 9.68 22.23 0.22 -1.97 16 19 C -0.06 -0.99 9.76 22.54 0.22 -0.77 16 20 C -0.04 -0.67 5.73 -21.36 -0.12 -0.79 16 21 C 0.28 5.81 15.33 88.34 1.35 7.16 16 22 N -0.46 -11.56 18.53 19.00 0.35 -11.21 16 23 C -0.06 -1.07 9.76 22.54 0.22 -0.85 16 24 C -0.12 -2.44 9.68 22.23 0.22 -2.22 16 25 H 0.22 8.17 7.80 -4.41 -0.03 8.14 16 26 H 0.10 4.23 6.52 -2.39 -0.02 4.22 16 27 H 0.09 3.21 7.68 -2.39 -0.02 3.19 16 28 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 29 H 0.16 3.40 8.08 -2.39 -0.02 3.38 16 30 H 0.17 3.01 8.08 -2.39 -0.02 2.99 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.62 327.57 3.94 -66.68 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.13 Total: 16.78 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 5.84 Total: -36.07 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -0.44 Total: -96.00 kcal Atomic # 8 Polarization: -86.93 SS G_CDS: -4.32 Total: -91.24 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: 99.13 SS G_CDS: -0.30 Total: 98.83 kcal Total: -70.62 3.94 -66.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311275884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.063 kcal (2) G-P(sol) polarization free energy of solvation -70.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds