Wall clock time and date at job start Fri Apr 10 2020 14:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47072 * 176.88212 * 3 2 1 5 5 C 1.36935 * 120.00229 * 275.00109 * 4 3 2 6 6 H 1.07996 * 119.99796 * 142.30338 * 5 4 3 7 7 C 1.38809 * 120.00092 * 322.30630 * 5 4 3 8 8 N 1.31612 * 120.00077 * 155.14329 * 7 5 4 9 9 Si 1.86799 * 119.99909 * 335.13910 * 7 5 4 10 10 H 1.48499 * 109.47531 * 95.63384 * 9 7 5 11 11 H 1.48496 * 109.47309 * 215.63751 * 9 7 5 12 12 H 1.48507 * 109.47009 * 335.63584 * 9 7 5 13 13 S 1.65598 * 119.99459 * 94.99872 * 4 3 2 14 14 O 1.42108 * 104.27656 * 149.97828 * 13 4 3 15 15 O 1.42108 * 104.28125 * 22.12311 * 13 4 3 16 16 C 1.81401 * 104.45289 * 266.04920 * 13 4 3 17 17 C 1.50698 * 109.47074 * 180.02562 * 16 13 4 18 18 C 1.38380 * 119.92678 * 270.02195 * 17 16 13 19 19 C 1.38338 * 120.31130 * 180.02562 * 18 17 16 20 20 C 1.37971 * 120.14596 * 359.66775 * 19 18 17 21 21 C 1.39610 * 119.84741 * 0.60666 * 20 19 18 22 22 C 1.43206 * 120.15045 * 179.69162 * 21 20 19 23 23 N 9.59901 * 106.17586 * 205.50437 * 2 1 3 24 24 C 1.37931 * 119.92566 * 90.00329 * 17 16 13 25 25 H 4.40644 * 5.51532 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.46684 * 56.88674 * 3 2 1 27 27 H 1.08993 * 109.46846 * 296.88617 * 3 2 1 28 28 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46758 * 60.00556 * 16 13 4 30 30 H 1.09000 * 109.46857 * 299.99896 * 16 13 4 31 31 H 1.08006 * 119.84681 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.92959 * 180.02562 * 19 18 17 33 33 H 1.08005 * 120.07490 * 180.29941 * 20 19 18 34 34 H 1.08000 * 120.07662 * 0.03870 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3800 -0.0751 5 6 3.2642 1.9949 -1.2917 6 1 3.0222 3.0422 -1.3961 7 6 3.7075 1.2720 -2.3907 8 7 3.3882 1.6612 -3.6067 9 14 4.7574 -0.2532 -2.1437 10 1 3.8910 -1.4591 -2.1629 11 1 5.7597 -0.3463 -3.2354 12 1 5.4562 -0.1666 -0.8362 13 16 3.5271 2.1957 1.3113 14 8 4.5525 3.0942 0.9103 15 8 3.7822 1.1699 2.2611 16 6 2.0184 3.1045 1.7455 17 6 2.2540 3.8958 3.0062 18 6 1.9891 3.3256 4.2389 19 6 2.2020 4.0450 5.4012 20 6 2.6869 5.3352 5.3385 21 6 2.9508 5.9188 4.0980 22 6 3.4480 7.2598 4.0252 23 7 3.8482 8.3206 3.9695 24 6 2.7335 5.1868 2.9288 25 1 -1.0502 -0.0003 0.0002 26 1 3.0095 -0.5606 -0.8608 27 1 3.0095 -0.4639 0.9165 28 1 3.6976 1.1559 -4.3746 29 1 1.2030 2.3992 1.9059 30 1 1.7572 3.7837 0.9341 31 1 1.6137 2.3144 4.2939 32 1 1.9936 3.5938 6.3600 33 1 2.8572 5.8941 6.2469 34 1 2.9395 5.6308 1.9661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984840.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:13 Heat of formation + Delta-G solvation = 38.763488 kcal Electronic energy + Delta-G solvation = -21860.427809 eV Core-core repulsion = 18466.387390 eV Total energy + Delta-G solvation = -3394.040419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.63011 -38.16634 -37.93044 -37.68487 -36.81172 -34.30661 -34.19074 -33.08668 -32.36328 -28.63302 -28.29026 -25.85282 -25.00238 -23.05047 -20.38051 -20.12818 -19.42200 -18.86920 -18.14405 -17.57318 -17.35296 -17.12168 -16.80024 -16.17317 -15.48527 -15.29261 -15.13557 -14.91831 -14.74961 -14.51072 -14.27514 -14.15971 -14.09673 -13.55963 -13.51999 -13.14517 -13.02054 -12.92035 -12.71510 -12.56824 -12.52595 -12.29444 -12.08606 -11.97359 -11.32677 -11.07369 -10.74516 -10.21139 -10.04449 -9.77151 -8.43988 -6.05721 -0.74276 -0.28268 0.28893 1.20318 1.35156 1.44495 1.50875 1.63816 1.83865 2.03855 2.25702 2.32987 2.70875 2.77194 2.83343 3.03326 3.27650 3.38837 3.67462 3.79989 3.97061 4.14801 4.17159 4.27238 4.42909 4.51173 4.55470 4.71753 4.89908 5.04746 5.18161 5.25966 5.26979 5.35937 5.69847 5.75320 6.15434 6.33584 6.82729 7.07007 7.12545 8.70676 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.004773 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.437580 B = 5865.259836 C = 6465.594980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.231 4.231 3 C 0.198 3.802 4 N -0.877 5.877 5 C -0.314 4.314 6 H 0.082 0.918 7 C 0.029 3.971 8 N -0.903 5.903 9 Si 0.901 3.099 10 H -0.248 1.248 11 H -0.286 1.286 12 H -0.263 1.263 13 S 2.578 3.422 14 O -0.988 6.988 15 O -0.988 6.988 16 C -0.558 4.558 17 C -0.108 4.108 18 C -0.078 4.078 19 C -0.106 4.106 20 C -0.051 4.051 21 C -0.042 4.042 22 C 0.278 3.722 23 N -0.459 5.459 24 C -0.073 4.073 25 H 0.257 0.743 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.275 0.725 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.182 0.818 33 H 0.169 0.831 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -1.177 17.532 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.233 4.233 3 C 0.073 3.927 4 N -0.707 5.707 5 C -0.446 4.446 6 H 0.099 0.901 7 C -0.176 4.176 8 N -0.542 5.542 9 Si 0.726 3.274 10 H -0.174 1.174 11 H -0.212 1.212 12 H -0.187 1.187 13 S 2.680 3.320 14 O -0.978 6.978 15 O -0.978 6.978 16 C -0.689 4.689 17 C -0.110 4.110 18 C -0.097 4.097 19 C -0.124 4.124 20 C -0.071 4.071 21 C -0.046 4.046 22 C -0.036 4.036 23 N -0.134 5.134 24 C -0.095 4.095 25 H 0.273 0.727 26 H 0.093 0.907 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.186 0.814 30 H 0.168 0.832 31 H 0.176 0.824 32 H 0.199 0.801 33 H 0.186 0.814 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.036 0.413 17.684 19.037 hybrid contribution -0.115 -0.629 -1.208 1.367 sum -7.151 -0.216 16.476 17.962 Atomic orbital electron populations 1.25692 0.96358 0.97626 0.99813 1.23862 0.95215 1.02634 1.01630 1.18640 0.85411 0.85225 1.03449 1.53108 1.77435 1.20945 1.19182 1.18379 1.44665 0.96754 0.84759 0.90050 1.25808 0.96469 1.00735 0.94545 1.69939 1.42787 1.42495 0.98952 0.86515 0.80607 0.81513 0.78760 1.17357 1.21216 1.18740 1.05945 0.77747 0.75074 0.73199 1.93490 1.54907 1.67859 1.81531 1.93450 1.85055 1.56047 1.63288 1.29411 1.21486 1.13318 1.04646 1.19015 1.04001 0.94347 0.93632 1.21857 0.95342 1.01423 0.91119 1.21573 0.97759 0.93268 0.99786 1.21684 0.93823 0.95602 0.96013 1.16008 1.06413 0.86587 0.95546 1.25808 0.92493 0.92701 0.92632 1.81225 1.10605 1.13156 1.08456 1.21299 0.95981 0.93625 0.98627 0.72718 0.90667 0.86504 0.91497 0.81437 0.83159 0.82407 0.80095 0.81383 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.89 19.25 74.32 1.43 -3.46 16 2 C -0.23 -8.14 13.64 31.12 0.42 -7.71 16 3 C 0.20 7.96 5.10 84.57 0.43 8.39 16 4 N -0.88 -39.33 2.35 -352.54 -0.83 -40.16 16 5 C -0.31 -16.60 9.22 84.03 0.77 -15.83 16 6 H 0.08 4.54 8.06 -2.91 -0.02 4.52 16 7 C 0.03 1.60 5.28 84.86 0.45 2.05 16 8 N -0.90 -51.81 13.97 21.65 0.30 -51.51 16 9 Si 0.90 42.24 25.22 68.60 1.73 43.97 16 10 H -0.25 -10.50 6.65 99.48 0.66 -9.84 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 13 S 2.58 102.50 5.36 -56.49 -0.30 102.20 16 14 O -0.99 -47.39 17.30 -127.65 -2.21 -49.60 16 15 O -0.99 -39.46 16.45 -127.65 -2.10 -41.56 16 16 C -0.56 -15.42 6.30 71.24 0.45 -14.97 16 17 C -0.11 -2.60 5.13 -19.90 -0.10 -2.70 16 18 C -0.08 -1.37 9.69 22.33 0.22 -1.15 16 19 C -0.11 -1.28 10.03 22.23 0.22 -1.06 16 20 C -0.05 -0.69 9.76 22.54 0.22 -0.47 16 21 C -0.04 -0.88 5.73 -21.36 -0.12 -1.00 16 22 C 0.28 6.90 15.33 88.34 1.35 8.25 16 23 N -0.46 -13.49 18.53 19.00 0.35 -13.14 16 24 C -0.07 -1.82 9.40 22.54 0.21 -1.61 16 25 H 0.26 4.33 7.80 -4.41 -0.03 4.29 16 26 H 0.08 3.22 3.29 -2.39 -0.01 3.21 16 27 H 0.12 4.20 6.77 -2.39 -0.02 4.19 16 28 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.17 3.67 8.08 -2.39 -0.02 3.65 16 30 H 0.15 4.06 8.08 -2.39 -0.02 4.04 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -73.78 326.54 4.00 -69.79 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.09 Total: 11.27 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 5.96 Total: -31.27 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -0.17 Total: -104.80 kcal Atomic # 8 Polarization: -86.85 SS G_CDS: -4.31 Total: -91.15 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.73 Total: 43.97 kcal Atomic # 16 Polarization: 102.50 SS G_CDS: -0.30 Total: 102.20 kcal Total: -73.78 4.00 -69.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984840.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.550 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds