Wall clock time and date at job start Fri Apr 10 2020 14:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 S 1.76201 * 125.20371 * 179.97438 * 5 4 3 7 7 O 1.42094 * 106.40051 * 203.53618 * 6 5 4 8 8 O 1.42099 * 106.40160 * 336.45998 * 6 5 4 9 9 N 1.65607 * 107.21554 * 89.99958 * 6 5 4 10 10 C 1.46495 * 119.99945 * 65.00080 * 9 6 5 11 11 C 1.52999 * 109.46680 * 165.00031 * 10 9 6 12 12 N 1.46899 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.46905 * 111.00142 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47249 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99487 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00057 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99944 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47508 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47190 * 120.00449 * 18 16 14 21 21 H 1.48505 * 109.47179 * 240.00068 * 18 16 14 22 22 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 26 26 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 27 27 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 28 28 H 0.97003 * 119.99503 * 245.00072 * 9 6 5 29 29 H 1.08998 * 109.47272 * 284.99528 * 10 9 6 30 30 H 1.09000 * 109.47353 * 45.00047 * 10 9 6 31 31 H 1.09007 * 109.47385 * 299.99430 * 11 10 9 32 32 H 1.08998 * 109.47943 * 59.99883 * 11 10 9 33 33 H 1.00906 * 110.99957 * 56.04641 * 12 11 10 34 34 H 1.09000 * 109.47422 * 300.00035 * 13 12 11 35 35 H 1.08998 * 109.46796 * 60.00067 * 13 12 11 36 36 H 0.97003 * 120.00294 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 16 5.6249 -1.0666 0.0005 7 8 5.5615 -2.3776 -0.5440 8 8 6.4395 -0.0374 -0.5439 9 7 6.0838 -1.2389 1.5823 10 6 5.4033 -2.2117 2.4406 11 6 6.2332 -2.4447 3.7047 12 7 5.5506 -3.4198 4.5657 13 6 6.3206 -3.6694 5.7916 14 6 5.5906 -4.6719 6.6480 15 1 4.6490 -5.0827 6.3146 16 6 6.1251 -5.0652 7.8565 17 7 7.2719 -4.5652 8.2621 18 14 5.2199 -6.3072 8.9182 19 1 3.9618 -6.7130 8.2418 20 1 6.0783 -7.5014 9.1240 21 1 4.9003 -5.6949 10.2329 22 16 2.5210 -1.4371 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6351 0.0002 28 1 6.8031 -0.6955 1.9405 29 1 4.4210 -1.8285 2.7164 30 1 5.2883 -3.1529 1.9028 31 1 7.2156 -2.8281 3.4289 32 1 6.3483 -1.5037 4.2425 33 1 5.3741 -4.2800 4.0685 34 1 7.3033 -4.0618 5.5300 35 1 6.4369 -2.7368 6.3437 36 1 7.6478 -4.8416 9.1126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591756883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:32 Heat of formation + Delta-G solvation = -75.794809 kcal Electronic energy + Delta-G solvation = -19769.483111 eV Core-core repulsion = 16505.919023 eV Total energy + Delta-G solvation = -3263.564088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.06221 -38.40982 -37.94000 -37.08142 -35.85426 -34.24134 -33.11232 -30.10382 -28.06875 -27.26466 -24.34090 -23.81569 -23.07420 -21.52565 -20.05865 -19.07528 -18.68103 -18.30311 -17.43096 -17.04026 -16.89141 -16.41005 -15.89813 -15.48508 -15.23335 -14.95347 -14.67280 -14.45149 -14.10029 -13.80362 -13.65678 -13.34042 -13.32975 -13.27723 -13.25268 -13.05600 -13.02521 -12.66990 -12.58356 -12.35796 -12.24398 -11.91049 -11.81393 -11.27652 -10.68156 -10.59006 -10.06302 -9.59953 -9.17625 -8.21823 -6.32584 -0.80223 -0.48561 0.37608 0.76668 1.43543 1.43856 1.45458 1.57886 1.95121 2.41811 2.60543 3.12262 3.34680 3.68183 3.75095 3.84094 4.14817 4.21568 4.33977 4.50294 4.55789 4.57471 4.68702 4.82965 4.91203 5.02617 5.04807 5.08610 5.12807 5.27563 5.37015 5.62387 5.95158 6.02224 6.40072 6.70149 6.88971 7.38437 8.90013 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.003087 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.884453 B = 9067.382251 C =10075.033534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.127 4.127 3 C -0.182 4.182 4 C 0.017 3.983 5 C -0.817 4.817 6 S 2.743 3.257 7 O -0.983 6.983 8 O -0.976 6.976 9 N -1.105 6.105 10 C 0.126 3.874 11 C 0.054 3.946 12 N -0.686 5.686 13 C 0.207 3.793 14 C -0.535 4.535 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.279 1.279 22 S 0.183 5.817 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.177 0.823 27 H 0.169 0.831 28 H 0.428 0.572 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.339 0.661 34 H -0.037 1.037 35 H 0.004 0.996 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 12.520 -18.666 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.247 4.247 3 C -0.211 4.211 4 C -0.018 4.018 5 C -1.020 5.020 6 S 2.831 3.169 7 O -0.973 6.973 8 O -0.967 6.967 9 N -0.868 5.868 10 C 0.000 4.000 11 C -0.077 4.077 12 N -0.318 5.318 13 C 0.079 3.921 14 C -0.573 4.573 15 H 0.086 0.914 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.204 1.204 22 S 0.449 5.551 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.195 0.805 27 H 0.186 0.814 28 H 0.265 0.735 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.156 0.844 34 H -0.019 1.019 35 H 0.022 0.978 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.040 11.090 -19.027 25.595 hybrid contribution 0.918 0.850 0.884 1.532 sum -12.122 11.940 -18.143 24.874 Atomic orbital electron populations 1.20681 0.84875 1.05125 1.04687 1.25639 1.02184 0.95874 1.01018 1.20637 0.92109 1.01229 1.07124 1.20342 0.98075 0.94239 0.89175 1.35503 1.26173 1.08129 1.32228 1.00176 0.72317 0.72557 0.71861 1.93563 1.87140 1.39502 1.77137 1.93557 1.66770 1.59451 1.76879 1.55189 1.49109 1.51874 1.30622 1.21185 0.96117 0.92023 0.90689 1.22039 0.95208 0.97611 0.92855 1.60485 1.48783 1.15432 1.07052 1.19235 0.90497 0.94994 0.87355 1.21595 1.07208 1.24364 1.04155 0.91441 1.25953 0.95812 0.98767 0.99268 1.70093 1.19908 1.45299 1.22187 0.85273 0.78708 0.78102 0.78135 1.18488 1.20513 1.20444 1.84452 0.92934 1.07587 1.70118 0.88390 0.87998 0.90195 0.80545 0.81358 0.73484 0.89789 0.90315 0.95390 0.90731 0.84406 1.01892 0.97752 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.38 71.24 0.74 -0.03 16 2 C -0.13 -1.88 6.51 24.59 0.16 -1.72 16 3 C -0.18 -2.56 10.05 21.22 0.21 -2.35 16 4 C 0.02 0.30 9.84 21.22 0.21 0.51 16 5 C -0.82 -17.51 6.55 66.72 0.44 -17.07 16 6 S 2.74 67.31 5.88 -56.49 -0.33 66.97 16 7 O -0.98 -30.15 17.38 -128.00 -2.22 -32.37 16 8 O -0.98 -27.13 17.80 -128.00 -2.28 -29.41 16 9 N -1.11 -24.71 6.00 -187.50 -1.12 -25.84 16 10 C 0.13 3.27 6.48 86.38 0.56 3.83 16 11 C 0.05 1.76 5.83 86.30 0.50 2.26 16 12 N -0.69 -28.11 6.49 -517.92 -3.36 -31.47 16 13 C 0.21 10.84 5.44 85.56 0.47 11.30 16 14 C -0.53 -29.98 9.32 25.60 0.24 -29.74 16 15 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 18 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 S 0.18 3.69 23.21 -56.49 -1.31 2.38 16 23 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 27 H 0.17 2.32 8.05 -2.91 -0.02 2.29 16 28 H 0.43 8.03 8.65 -96.74 -0.84 7.20 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.05 7.75 -2.39 -0.02 2.03 16 31 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.34 13.08 8.72 -89.69 -0.78 12.30 16 34 H -0.04 -2.06 8.14 -2.39 -0.02 -2.08 16 35 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.88 339.25 -4.85 -77.73 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.51 Total: 14.46 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.99 Total: -32.53 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.20 Total: -112.93 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -4.50 Total: -61.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 70.99 SS G_CDS: -1.64 Total: 69.35 kcal Total: -72.88 -4.85 -77.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.933 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds