Wall clock time and date at job start Fri Apr 10 2020 14:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34655 * 116.99756 * 2 1 4 4 O 1.21404 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.48243 * 119.99780 * 179.97438 * 3 2 1 6 6 C 1.42299 * 126.94261 * 179.70936 * 5 3 2 7 7 C 1.35311 * 103.92087 * 179.85234 * 6 5 3 8 8 S 1.76193 * 126.66380 * 180.10515 * 7 6 5 9 9 O 1.42098 * 106.40300 * 203.87494 * 8 7 6 10 10 O 1.42101 * 106.40139 * 336.79229 * 8 7 6 11 11 N 1.65598 * 107.21743 * 90.33263 * 8 7 6 12 12 C 1.46497 * 120.00008 * 65.00039 * 11 8 7 13 13 C 1.52998 * 109.47254 * 164.99983 * 12 11 8 14 14 C 1.50702 * 109.47388 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99582 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00121 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99752 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47292 * 60.00216 * 18 16 14 20 20 H 1.48505 * 109.46872 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47355 * 300.00013 * 18 16 14 22 22 O 1.34025 * 106.67479 * 0.40878 * 7 6 5 23 23 N 1.20904 * 111.85367 * 359.71780 * 22 7 6 24 24 H 1.08999 * 109.47008 * 60.00033 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47465 * 300.00024 * 1 2 3 27 27 H 1.07999 * 128.03849 * 359.97438 * 6 5 3 28 28 H 0.97006 * 120.00209 * 245.00020 * 11 8 7 29 29 H 1.08995 * 109.47385 * 285.00171 * 12 11 8 30 30 H 1.08998 * 109.47309 * 45.00268 * 12 11 8 31 31 H 1.09000 * 109.47112 * 299.99888 * 13 12 11 32 32 H 1.09003 * 109.47100 * 60.00220 * 13 12 11 33 33 H 0.96995 * 120.00307 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4020 2.2179 -0.0005 5 6 3.5436 1.2774 0.0006 6 6 4.3382 2.4579 -0.0051 7 6 5.6095 1.9947 0.0016 8 16 7.0819 2.9624 0.0018 9 8 8.1037 2.1384 -0.5423 10 8 6.7309 4.2271 -0.5429 11 7 7.4911 3.2318 1.5836 12 6 7.8756 2.1088 2.4422 13 6 8.5527 2.6419 3.7064 14 6 8.9489 1.4867 4.5894 15 1 8.7383 0.4736 4.2800 16 6 9.5801 1.7232 5.7922 17 7 9.8360 2.9568 6.1692 18 14 10.0704 0.2912 6.8870 19 1 11.0134 -0.5916 6.1545 20 1 10.7277 0.8087 8.1140 21 1 8.8595 -0.4817 7.2631 22 8 5.5313 0.6567 0.0011 23 7 4.3848 0.2729 0.0007 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0041 3.4849 -0.0111 28 1 7.4762 4.1332 1.9417 29 1 6.9869 1.5412 2.7179 30 1 8.5682 1.4611 1.9048 31 1 9.4415 3.2095 3.4308 32 1 7.8601 3.2897 4.2439 33 1 10.2797 3.1232 7.0155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599274885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:05 Heat of formation + Delta-G solvation = -116.128708 kcal Electronic energy + Delta-G solvation = -22208.263465 eV Core-core repulsion = 18364.364402 eV Total energy + Delta-G solvation = -3843.899063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.69219 -41.70109 -38.59268 -37.94746 -37.21288 -37.06377 -35.69376 -34.72588 -33.63952 -31.01925 -29.28558 -26.43418 -26.35980 -25.01145 -23.21336 -22.95313 -21.19730 -20.10276 -19.54338 -18.85008 -18.67186 -18.15636 -17.93299 -17.63293 -17.29536 -16.92393 -16.45627 -15.67817 -15.52474 -15.34797 -14.96304 -14.60890 -14.40820 -13.75106 -13.52339 -13.39195 -13.35552 -13.21671 -13.20998 -13.01945 -12.93745 -12.44591 -12.33925 -12.31339 -12.14785 -12.06608 -11.75929 -11.46415 -11.28845 -10.63081 -10.37963 -8.17113 -6.26622 -1.09573 -0.71698 -0.30806 0.93128 1.32898 1.46930 1.48483 1.55053 1.56932 1.85378 2.37233 2.42845 2.46557 3.13501 3.17998 3.18600 3.52888 3.67495 4.12654 4.18198 4.22806 4.23959 4.57581 4.60253 4.82571 4.85441 4.99535 5.55305 5.69878 5.85731 6.00607 6.05194 6.25795 6.32793 6.89603 7.42559 8.94395 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.003734 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.218676 B = 7496.074799 C = 8719.343741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.558 3.442 4 O -0.495 6.495 5 C -0.043 4.043 6 C -0.047 4.047 7 C -0.587 4.587 8 S 2.750 3.250 9 O -0.950 6.950 10 O -0.942 6.942 11 N -1.092 6.092 12 C 0.124 3.876 13 C 0.019 3.981 14 C -0.544 4.544 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.268 1.268 22 O 0.207 5.793 23 N -0.293 5.293 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.073 0.927 27 H 0.231 0.769 28 H 0.431 0.569 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.008 0.992 32 H 0.011 0.989 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.778 -2.764 -13.040 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.400 3.600 4 O -0.381 6.381 5 C -0.199 4.199 6 C -0.069 4.069 7 C -0.726 4.726 8 S 2.827 3.173 9 O -0.940 6.940 10 O -0.931 6.931 11 N -0.858 5.858 12 C -0.002 4.002 13 C -0.020 4.020 14 C -0.583 4.583 15 H 0.086 0.914 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.193 1.193 22 O 0.111 5.889 23 N 0.021 4.979 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.091 0.909 27 H 0.247 0.753 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.026 0.974 32 H 0.030 0.970 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.970 -3.690 -13.730 21.382 hybrid contribution -0.542 0.381 1.289 1.449 sum -16.512 -3.309 -12.441 20.938 Atomic orbital electron populations 1.23822 0.72370 1.06671 1.03657 1.86602 1.26662 1.30336 1.82977 1.19271 0.85245 0.82594 0.72935 1.90886 1.65186 1.36360 1.45663 1.22816 0.94129 0.90655 1.12252 1.23267 0.88275 1.02534 0.92825 1.38233 1.22305 0.92913 1.19171 1.01014 0.71702 0.72193 0.72367 1.93615 1.52982 1.70452 1.76978 1.93649 1.84209 1.38385 1.76875 1.55322 1.82009 1.17732 1.30703 1.21483 0.99570 0.86977 0.92121 1.19164 0.95302 0.96139 0.91376 1.21574 1.38459 0.94176 1.04070 0.91382 1.25852 0.95825 0.98173 0.99513 1.70056 1.42924 1.21045 1.22889 0.85581 0.78765 0.79339 0.77853 1.19237 1.21288 1.19298 1.85001 1.21433 1.19686 1.62799 1.74153 0.90622 1.24166 1.08916 0.90595 0.84418 0.90868 0.75285 0.73159 0.91215 0.90266 0.97366 0.97033 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -7.27 10.58 -55.63 -0.59 -7.86 16 3 C 0.56 13.21 7.99 70.48 0.56 13.77 16 4 O -0.49 -12.60 16.74 20.15 0.34 -12.27 16 5 C -0.04 -1.07 7.24 42.94 0.31 -0.76 16 6 C -0.05 -1.01 10.77 22.60 0.24 -0.76 16 7 C -0.59 -13.78 7.48 67.14 0.50 -13.28 16 8 S 2.75 68.32 5.90 -56.49 -0.33 67.98 16 9 O -0.95 -29.37 17.49 -128.00 -2.24 -31.61 16 10 O -0.94 -24.51 17.87 -128.00 -2.29 -26.80 16 11 N -1.09 -29.50 6.00 -187.51 -1.12 -30.62 16 12 C 0.12 4.27 6.16 86.38 0.53 4.80 16 13 C 0.02 0.88 5.11 29.85 0.15 1.03 16 14 C -0.54 -28.32 9.11 25.60 0.23 -28.09 16 15 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 16 C 0.00 0.26 5.46 84.66 0.46 0.73 16 17 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 18 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 22 O 0.21 5.41 11.18 71.80 0.80 6.22 16 23 N -0.29 -7.86 12.12 -49.51 -0.60 -8.46 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.14 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.23 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.43 10.33 8.65 -96.74 -0.84 9.50 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.72 7.75 -2.39 -0.02 2.70 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -69.14 321.25 0.81 -68.33 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.33 Total: 5.02 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.20 Total: -21.04 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -1.44 Total: -92.09 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -3.97 Total: -72.32 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 68.32 SS G_CDS: -0.33 Total: 67.98 kcal Total: -69.14 0.81 -68.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599274885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.795 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds