Wall clock time and date at job start Fri Apr 10 2020 14:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00164 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00181 * 3 2 1 6 6 H 1.48499 * 109.47352 * 150.00011 * 3 2 1 7 7 C 1.38955 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99763 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00445 * 179.72381 * 7 2 1 10 10 C 1.34774 * 120.00310 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00003 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00110 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47272 * 179.97438 * 12 10 9 14 14 C 1.34778 * 120.00064 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99828 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99743 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46807 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.38245 * 55.22002 * 17 16 14 19 19 C 1.52645 * 109.38060 * 174.99837 * 17 16 14 20 20 S 1.81172 * 109.99097 * 187.01111 * 19 17 16 21 21 C 1.81174 * 103.31471 * 297.39141 * 20 19 17 22 22 C 1.52634 * 109.99556 * 62.61605 * 21 20 19 23 23 S 1.81172 * 109.38824 * 295.53379 * 17 16 14 24 24 H 0.97000 * 119.99719 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99649 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47519 * 300.00142 * 12 10 9 27 27 H 1.09001 * 109.46880 * 60.00149 * 12 10 9 28 28 H 0.97004 * 119.99617 * 0.02562 * 13 12 10 29 29 H 1.08993 * 109.47275 * 299.99877 * 16 14 13 30 30 H 1.09001 * 109.47061 * 60.00318 * 16 14 13 31 31 H 1.08992 * 109.38986 * 307.17652 * 19 17 16 32 32 H 1.08997 * 109.38127 * 66.85948 * 19 17 16 33 33 H 1.09003 * 109.38364 * 182.77237 * 21 20 19 34 34 H 1.08994 * 109.38305 * 302.55790 * 21 20 19 35 35 H 1.09002 * 109.38475 * 53.30906 * 22 21 20 36 36 H 1.09002 * 109.38817 * 173.09512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 -0.0052 10 6 4.0537 -2.3706 -0.0052 11 8 3.4473 -3.4210 -0.0006 12 6 5.5608 -2.3706 -0.0121 13 7 6.0491 -3.7517 -0.0100 14 6 7.3742 -3.9980 -0.0148 15 8 8.1622 -3.0762 -0.0203 16 6 7.8765 -5.4188 -0.0121 17 6 9.4065 -5.4188 -0.0192 18 1 9.7722 -4.8293 0.8216 19 6 9.9137 -6.8528 0.1090 20 16 11.7143 -6.8573 0.3097 21 6 12.3084 -6.1260 -1.2377 22 6 11.8013 -4.6921 -1.3658 23 16 10.0008 -4.6876 -1.5667 24 1 -0.4850 0.8401 0.0004 25 1 3.8648 -0.3633 -0.0100 26 1 5.9201 -1.8591 -0.9050 27 1 5.9281 -1.8544 0.8749 28 1 5.4187 -4.4890 -0.0053 29 1 7.5170 -5.9296 0.8811 30 1 7.5095 -5.9356 -0.8989 31 1 9.4518 -7.3238 0.9766 32 1 9.6484 -7.4119 -0.7882 33 1 13.3985 -6.1260 -1.2427 34 1 11.9429 -6.7140 -2.0795 35 1 12.0667 -4.1330 -0.4686 36 1 12.2618 -4.2217 -2.2346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:30 Heat of formation + Delta-G solvation = -73.492002 kcal Electronic energy + Delta-G solvation = -19816.207601 eV Core-core repulsion = 16552.743370 eV Total energy + Delta-G solvation = -3263.464231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.070 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77578 -38.36412 -35.22628 -34.50362 -33.75373 -33.36875 -31.82409 -29.32752 -27.21506 -24.41057 -24.20803 -22.54045 -20.28540 -19.65165 -18.70536 -17.68035 -17.20552 -16.70738 -16.03405 -15.74214 -15.42336 -15.19583 -14.84283 -14.48630 -14.41490 -14.05723 -13.90272 -13.47847 -13.33969 -13.15456 -12.80676 -12.55109 -12.45351 -12.19044 -12.00715 -11.70869 -11.24923 -11.13315 -10.65969 -10.55291 -10.08392 -9.99480 -9.75960 -9.71756 -8.90159 -8.79684 -8.32535 -8.28812 -7.75735 -6.42658 -3.95303 1.15909 1.35370 1.95145 2.25107 2.74419 2.98328 3.02977 3.10851 3.21993 3.54221 4.01957 4.15315 4.24531 4.38366 4.53916 4.57084 4.62067 4.84158 4.93077 5.02609 5.12104 5.13827 5.16093 5.25463 5.34222 5.53911 5.66489 5.77324 5.80652 6.54953 7.42006 7.70196 7.98330 8.33840 8.44267 8.79696 9.27851 9.61272 10.69465 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.039457 B = 0.002571 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.470680 B =10886.071191 C =11326.657447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.437 3.563 11 O -0.580 6.580 12 C 0.108 3.892 13 N -0.709 5.709 14 C 0.507 3.493 15 O -0.526 6.526 16 C -0.122 4.122 17 C -0.043 4.043 18 H 0.108 0.892 19 C -0.085 4.085 20 S -0.253 6.253 21 C -0.088 4.088 22 C -0.098 4.098 23 S -0.215 6.215 24 H 0.276 0.724 25 H 0.374 0.626 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.411 0.589 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.484 -11.021 -1.297 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.292 3.708 15 O -0.403 6.403 16 C -0.165 4.165 17 C -0.174 4.174 18 H 0.126 0.874 19 C -0.235 4.235 20 S -0.024 6.024 21 C -0.239 4.239 22 C -0.248 4.248 23 S 0.013 5.987 24 H 0.086 0.914 25 H 0.208 0.792 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.249 0.751 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 23.439 -10.921 -1.306 25.891 hybrid contribution 0.192 1.101 0.013 1.118 sum 23.632 -9.820 -1.293 25.623 Atomic orbital electron populations 1.69617 1.05718 1.27838 1.48103 1.25071 0.95537 0.98185 0.97107 0.86671 0.79919 0.83750 0.79165 1.19368 1.19963 1.19216 1.19440 0.78963 0.96794 1.48711 0.86085 1.42127 1.07713 1.06160 1.65352 1.19655 0.88098 0.84869 0.85026 1.90536 1.69239 1.30907 1.55750 1.20952 0.93657 0.84100 1.03298 1.45666 1.06918 1.09131 1.74636 1.20290 0.82296 0.91177 0.77055 1.90750 1.54953 1.45753 1.48818 1.21511 0.92984 0.96159 1.05824 1.23081 0.97541 0.96859 0.99948 0.87377 1.23666 0.93973 0.98392 1.07477 1.86831 1.05863 1.82318 1.27412 1.23583 1.04615 0.97580 0.98080 1.23570 0.95708 0.98212 1.07284 1.87072 1.03644 1.83739 1.24277 0.91364 0.79240 0.89717 0.89798 0.75091 0.87044 0.87751 0.86388 0.88310 0.86781 0.88571 0.88531 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.50 0.77 -24.08 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.93 27.73 -169.99 -4.71 14.21 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.26 6.53 56.52 0.37 -4.89 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 9 N -0.58 -13.30 5.09 -10.96 -0.06 -13.36 16 10 C 0.44 9.48 7.85 -10.99 -0.09 9.40 16 11 O -0.58 -14.42 15.24 5.54 0.08 -14.34 16 12 C 0.11 1.82 6.15 -5.19 -0.03 1.79 16 13 N -0.71 -10.65 5.53 -61.47 -0.34 -10.99 16 14 C 0.51 7.00 7.53 -10.98 -0.08 6.92 16 15 O -0.53 -8.79 14.76 5.56 0.08 -8.71 16 16 C -0.12 -1.15 5.16 -27.88 -0.14 -1.29 16 17 C -0.04 -0.41 2.03 -26.91 -0.05 -0.46 16 18 H 0.11 1.19 7.96 -51.91 -0.41 0.78 16 19 C -0.08 -0.63 5.53 36.98 0.20 -0.42 16 20 S -0.25 -2.12 22.05 -107.50 -2.37 -4.50 16 21 C -0.09 -0.60 6.25 36.97 0.23 -0.37 16 22 C -0.10 -0.79 6.25 36.97 0.23 -0.55 16 23 S -0.22 -2.38 19.80 -107.50 -2.13 -4.51 16 24 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.37 7.64 5.77 -40.82 -0.24 7.41 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.41 6.04 7.44 -40.82 -0.30 5.74 16 29 H 0.11 0.78 8.13 -51.93 -0.42 0.35 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.12 0.70 8.13 -51.92 -0.42 0.28 16 32 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.11 0.77 8.14 -51.91 -0.42 0.34 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -32.62 325.58 -8.47 -41.09 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.73 Total: 12.81 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 0.02 Total: 7.46 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.38 Total: -48.43 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.05 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.21 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -4.50 Total: -9.00 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.62 -8.47 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.399 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds