Wall clock time and date at job start Fri Apr 10 2020 14:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 117.00152 * 2 1 4 4 C 1.38004 * 120.05354 * 359.72006 * 3 2 1 5 5 C 1.40271 * 119.69455 * 179.74877 * 4 3 2 6 6 C 1.46393 * 120.09974 * 180.24714 * 5 4 3 7 7 C 1.37876 * 119.99781 * 149.03391 * 6 5 4 8 8 C 1.43197 * 120.00077 * 173.43174 * 7 6 5 9 9 N 8.28434 * 82.75856 * 2.81092 * 2 1 3 10 10 C 1.46938 * 119.99746 * 353.43754 * 7 6 5 11 11 N 1.34777 * 120.00049 * 292.40681 * 10 7 6 12 12 S 1.71197 * 119.99864 * 112.41213 * 10 7 6 13 13 C 1.40281 * 119.79537 * 0.55168 * 5 4 3 14 14 C 1.36536 * 120.10540 * 359.69547 * 13 5 4 15 15 C 1.39138 * 120.31484 * 0.03177 * 14 13 5 16 16 O 1.35549 * 119.90320 * 179.97438 * 15 14 13 17 17 C 1.34734 * 116.99883 * 354.52928 * 16 15 14 18 18 H 1.07995 * 119.99651 * 5.06362 * 17 16 15 19 19 C 1.38740 * 119.99757 * 185.06642 * 17 16 15 20 20 N 1.31491 * 120.00408 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46671 * 90.00143 * 21 19 17 23 23 H 1.48500 * 109.47557 * 210.00254 * 21 19 17 24 24 H 1.48503 * 109.47256 * 330.00370 * 21 19 17 25 25 H 1.08995 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46238 * 60.00320 * 1 2 3 27 27 H 1.08999 * 109.47244 * 300.00684 * 1 2 3 28 28 H 1.07998 * 120.15316 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.00510 * 329.04428 * 6 5 4 30 30 H 0.97001 * 119.99582 * 0.02562 * 11 10 7 31 31 H 0.96998 * 120.00188 * 180.02562 * 11 10 7 32 32 H 1.08001 * 119.94575 * 179.72616 * 13 5 4 33 33 H 1.08001 * 119.84799 * 180.02562 * 14 13 5 34 34 H 0.96994 * 120.00534 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2958 2.3694 -0.0058 5 6 1.9404 3.6152 -0.0005 6 6 1.1529 4.8494 -0.0011 7 6 1.6427 5.9799 0.6178 8 6 0.9413 7.2225 0.4980 9 7 0.3848 8.2084 0.4030 10 6 2.8845 5.9096 1.4001 11 7 2.9179 5.2068 2.5497 12 16 4.2889 6.7205 0.8515 13 6 3.3419 3.6749 -0.0009 14 6 4.0764 2.5239 -0.0003 15 6 3.4416 1.2857 0.0001 16 8 4.1789 0.1483 0.0002 17 6 5.5144 0.2851 -0.1146 18 1 5.9579 1.2698 -0.1189 19 6 6.3197 -0.8391 -0.2273 20 7 5.7796 -2.0379 -0.2226 21 14 8.1712 -0.6495 -0.3871 22 1 8.7871 -0.6491 0.9641 23 1 8.7179 -1.7797 -1.1801 24 1 8.4803 0.6312 -1.0724 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 0.2171 2.3168 -0.0108 29 1 0.1883 4.8743 -0.4862 30 1 2.1222 4.7471 2.8603 31 1 3.7375 5.1607 3.0663 32 1 3.8408 4.6328 -0.0012 33 1 5.1552 2.5746 -0.0002 34 1 6.3425 -2.8238 -0.3017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006627906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:45 Heat of formation + Delta-G solvation = 32.472489 kcal Electronic energy + Delta-G solvation = -21491.336037 eV Core-core repulsion = 18097.022820 eV Total energy + Delta-G solvation = -3394.313217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06466 -38.45467 -37.95499 -36.39042 -36.02122 -33.22304 -32.55612 -30.03897 -29.23261 -26.95980 -26.00968 -25.36999 -22.90781 -21.86038 -20.73193 -19.32050 -18.45216 -17.87296 -17.47715 -16.78788 -15.98812 -15.52222 -15.40990 -14.90464 -14.68971 -14.26018 -14.07434 -13.85655 -13.61711 -13.60573 -12.96336 -12.76552 -12.54481 -12.46705 -12.01606 -11.89609 -11.66319 -11.28679 -11.19698 -11.12049 -10.90326 -10.88238 -10.64888 -9.86213 -9.55932 -9.09050 -8.26942 -8.02107 -7.61800 -7.14836 -6.88779 -4.33707 0.25145 0.81013 1.95327 2.04983 2.14634 2.63328 2.94267 2.96196 3.01565 3.18991 3.54548 3.65817 3.73329 4.04119 4.14947 4.33666 4.64171 4.77948 5.00566 5.21507 5.31495 5.36034 5.46570 5.63236 5.67154 5.74846 5.99415 6.04925 6.25569 6.38219 6.56522 6.73365 6.77476 6.87593 7.04228 7.25871 7.52755 7.53549 7.86424 8.53630 9.19063 10.25115 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.004566 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.781945 B = 6131.440045 C = 7754.869561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.127 4.127 5 C -0.207 4.207 6 C 0.091 3.909 7 C -0.163 4.163 8 C 0.278 3.722 9 N -0.428 5.428 10 C 0.443 3.557 11 N -0.744 5.744 12 S -0.579 6.579 13 C -0.063 4.063 14 C -0.223 4.223 15 C 0.151 3.849 16 O -0.131 6.131 17 C -0.383 4.383 18 H 0.105 0.895 19 C 0.043 3.957 20 N -0.831 5.831 21 Si 0.947 3.053 22 H -0.268 1.268 23 H -0.273 1.273 24 H -0.260 1.260 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.126 0.874 29 H 0.140 0.860 30 H 0.407 0.593 31 H 0.423 0.577 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 3.762 4.153 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.147 4.147 5 C -0.209 4.209 6 C 0.064 3.936 7 C -0.172 4.172 8 C -0.036 4.036 9 N -0.105 5.105 10 C 0.184 3.816 11 N -0.274 5.274 12 S -0.444 6.444 13 C -0.082 4.082 14 C -0.242 4.242 15 C 0.091 3.909 16 O -0.029 6.029 17 C -0.458 4.458 18 H 0.122 0.878 19 C -0.166 4.166 20 N -0.460 5.460 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.184 1.184 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.239 0.761 31 H 0.258 0.742 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.327 5.045 3.783 10.445 hybrid contribution 0.166 -0.902 0.454 1.024 sum -8.161 4.143 4.236 10.085 Atomic orbital electron populations 1.22932 0.79996 1.03257 1.00396 1.86247 1.19701 1.26093 1.89675 1.17991 0.89237 0.84670 1.07470 1.20815 0.98484 0.90522 1.04903 1.17999 0.92763 0.90853 1.19284 1.22814 0.95817 0.88797 0.86172 1.16523 0.97481 0.89580 1.13656 1.24878 0.93121 0.92156 0.93488 1.81222 1.10004 1.09596 1.09661 1.23404 0.95554 0.80043 0.82572 1.43632 1.18144 1.45479 1.20148 1.93430 1.23454 1.51418 1.76083 1.21683 0.92477 0.99779 0.94311 1.20571 1.01044 0.90437 1.12184 1.19024 0.88257 0.87486 0.96086 1.83929 1.20052 1.26628 1.72307 1.21756 0.78052 0.95578 1.50399 0.87812 1.25538 1.01509 0.93995 0.95553 1.70021 1.37339 0.98110 1.40551 0.85588 0.78928 0.79211 0.79249 1.19282 1.19763 1.18424 0.88897 0.93317 0.93442 0.85617 0.84280 0.76081 0.74175 0.84265 0.84352 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.30 -5.59 10.28 -34.12 -0.35 -5.94 16 3 C 0.05 0.94 6.70 -39.11 -0.26 0.68 16 4 C -0.13 -1.79 8.79 -38.90 -0.34 -2.13 16 5 C -0.21 -2.83 5.51 -105.08 -0.58 -3.41 16 6 C 0.09 0.99 9.61 -36.43 -0.35 0.64 16 7 C -0.16 -1.96 5.39 -104.58 -0.56 -2.53 16 8 C 0.28 3.80 15.36 -22.47 -0.35 3.45 16 9 N -0.43 -6.62 18.54 41.84 0.78 -5.85 16 10 C 0.44 5.64 3.84 -12.74 -0.05 5.59 16 11 N -0.74 -6.67 8.43 32.52 0.27 -6.40 16 12 S -0.58 -9.95 29.00 -107.50 -3.12 -13.07 16 13 C -0.06 -1.01 8.04 -39.43 -0.32 -1.33 16 14 C -0.22 -4.22 9.09 -39.86 -0.36 -4.59 16 15 C 0.15 3.20 6.68 -38.69 -0.26 2.94 16 16 O -0.13 -3.35 9.52 -13.60 -0.13 -3.48 16 17 C -0.38 -9.51 9.48 30.92 0.29 -9.22 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.83 -21.90 13.67 55.48 0.76 -21.14 16 21 Si 0.95 18.36 29.55 -169.99 -5.02 13.34 16 22 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.50 7.65 -51.92 -0.40 0.10 16 27 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 28 H 0.13 1.34 6.29 -52.49 -0.33 1.01 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.41 2.60 8.81 -40.82 -0.36 2.24 16 31 H 0.42 3.36 8.81 -40.82 -0.36 3.00 16 32 H 0.14 2.29 4.14 -46.07 -0.19 2.10 16 33 H 0.14 2.69 5.61 -52.49 -0.29 2.40 16 34 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -31.85 322.75 -6.77 -38.62 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.58 Total: 6.62 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.24 Total: -7.57 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 1.81 Total: -33.39 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.48 Total: -9.41 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -3.12 Total: -13.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.85 -6.77 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006627906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.094 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds