Wall clock time and date at job start Fri Apr 10 2020 14:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 117.00152 * 2 1 4 4 C 1.38004 * 120.05354 * 359.72006 * 3 2 1 5 5 C 1.40271 * 119.69455 * 179.74877 * 4 3 2 6 6 C 1.46393 * 120.09974 * 180.24714 * 5 4 3 7 7 C 1.37876 * 119.99781 * 149.03391 * 6 5 4 8 8 C 1.43197 * 120.00077 * 173.43174 * 7 6 5 9 9 N 8.28434 * 82.75856 * 2.81092 * 2 1 3 10 10 C 1.46938 * 119.99746 * 353.43754 * 7 6 5 11 11 N 1.34777 * 120.00049 * 292.40681 * 10 7 6 12 12 S 1.71197 * 119.99864 * 112.41213 * 10 7 6 13 13 C 1.40281 * 119.79537 * 0.55168 * 5 4 3 14 14 C 1.36536 * 120.10540 * 359.69547 * 13 5 4 15 15 C 1.39138 * 120.31484 * 0.03177 * 14 13 5 16 16 O 1.35549 * 119.90320 * 179.97438 * 15 14 13 17 17 C 1.34734 * 116.99883 * 354.52928 * 16 15 14 18 18 H 1.07995 * 119.99651 * 5.06362 * 17 16 15 19 19 C 1.38740 * 119.99757 * 185.06642 * 17 16 15 20 20 N 1.31491 * 120.00408 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46671 * 90.00143 * 21 19 17 23 23 H 1.48500 * 109.47557 * 210.00254 * 21 19 17 24 24 H 1.48503 * 109.47256 * 330.00370 * 21 19 17 25 25 H 1.08995 * 109.46892 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46238 * 60.00320 * 1 2 3 27 27 H 1.08999 * 109.47244 * 300.00684 * 1 2 3 28 28 H 1.07998 * 120.15316 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.00510 * 329.04428 * 6 5 4 30 30 H 0.97001 * 119.99582 * 0.02562 * 11 10 7 31 31 H 0.96998 * 120.00188 * 180.02562 * 11 10 7 32 32 H 1.08001 * 119.94575 * 179.72616 * 13 5 4 33 33 H 1.08001 * 119.84799 * 180.02562 * 14 13 5 34 34 H 0.96994 * 120.00534 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2958 2.3694 -0.0058 5 6 1.9404 3.6152 -0.0005 6 6 1.1529 4.8494 -0.0011 7 6 1.6427 5.9799 0.6178 8 6 0.9413 7.2225 0.4980 9 7 0.3848 8.2084 0.4030 10 6 2.8845 5.9096 1.4001 11 7 2.9179 5.2068 2.5497 12 16 4.2889 6.7205 0.8515 13 6 3.3419 3.6749 -0.0009 14 6 4.0764 2.5239 -0.0003 15 6 3.4416 1.2857 0.0001 16 8 4.1789 0.1483 0.0002 17 6 5.5144 0.2851 -0.1146 18 1 5.9579 1.2698 -0.1189 19 6 6.3197 -0.8391 -0.2273 20 7 5.7796 -2.0379 -0.2226 21 14 8.1712 -0.6495 -0.3871 22 1 8.7871 -0.6491 0.9641 23 1 8.7179 -1.7797 -1.1801 24 1 8.4803 0.6312 -1.0724 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 0.2171 2.3168 -0.0108 29 1 0.1883 4.8743 -0.4862 30 1 2.1222 4.7471 2.8603 31 1 3.7375 5.1607 3.0663 32 1 3.8408 4.6328 -0.0012 33 1 5.1552 2.5746 -0.0002 34 1 6.3425 -2.8238 -0.3017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006627906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:45 Heat of formation + Delta-G solvation = 9.895088 kcal Electronic energy + Delta-G solvation = -21492.315067 eV Core-core repulsion = 18097.022820 eV Total energy + Delta-G solvation = -3395.292247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45327 -39.68494 -39.33574 -37.66808 -37.22106 -34.62369 -33.99531 -31.40679 -30.54158 -28.02971 -27.52280 -26.64274 -24.18587 -23.23425 -22.01986 -20.45696 -19.94597 -19.28565 -18.60963 -18.11904 -17.19113 -16.84632 -16.63651 -16.38702 -15.94579 -15.64456 -15.36588 -15.26224 -14.94468 -14.79312 -14.19105 -13.98845 -13.79806 -13.69835 -13.49807 -13.19990 -12.89904 -12.67338 -12.58424 -12.32254 -12.18744 -12.01067 -12.00329 -11.42865 -10.98697 -10.55673 -9.58688 -9.28717 -8.99288 -8.60691 -8.54226 -6.16193 -0.86298 -0.34933 0.54712 0.79154 0.89553 1.36581 1.44151 1.48884 1.52813 2.11642 2.13432 2.40440 2.57103 2.72874 2.92539 3.05382 3.25157 3.32762 3.85925 3.97819 4.17085 4.33952 4.43713 4.52016 4.54623 4.63680 4.78535 4.82421 4.95404 5.07197 5.27638 5.37755 5.42216 5.60570 5.84014 5.91286 5.96295 6.40922 6.63905 6.89729 7.65825 8.66230 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.004566 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.781945 B = 6131.440045 C = 7754.869561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.344 6.344 3 C 0.040 3.960 4 C -0.100 4.100 5 C -0.166 4.166 6 C 0.118 3.882 7 C -0.138 4.138 8 C 0.294 3.706 9 N -0.449 5.449 10 C 0.463 3.537 11 N -0.710 5.710 12 S -0.678 6.678 13 C -0.077 4.077 14 C -0.218 4.218 15 C 0.119 3.881 16 O -0.199 6.199 17 C -0.414 4.414 18 H 0.106 0.894 19 C -0.012 4.012 20 N -0.904 5.904 21 Si 1.012 2.988 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.255 1.255 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.428 0.572 31 H 0.433 0.567 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 6.806 4.713 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.259 6.259 3 C -0.005 4.005 4 C -0.119 4.119 5 C -0.167 4.167 6 C 0.091 3.909 7 C -0.147 4.147 8 C -0.021 4.021 9 N -0.126 5.126 10 C 0.198 3.802 11 N -0.239 5.239 12 S -0.543 6.543 13 C -0.097 4.097 14 C -0.238 4.238 15 C 0.065 3.935 16 O -0.103 6.103 17 C -0.490 4.490 18 H 0.123 0.877 19 C -0.212 4.212 20 N -0.539 5.539 21 Si 0.832 3.168 22 H -0.186 1.186 23 H -0.195 1.195 24 H -0.179 1.179 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.198 0.802 29 H 0.213 0.787 30 H 0.264 0.736 31 H 0.270 0.730 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.602 8.155 4.401 15.642 hybrid contribution 0.782 -1.175 0.430 1.475 sum -11.821 6.979 4.831 14.553 Atomic orbital electron populations 1.23348 0.76644 1.05058 1.02711 1.86227 1.23318 1.26617 1.89772 1.18308 0.88512 0.86301 1.07375 1.21308 1.00789 0.88494 1.01280 1.18330 0.91819 0.92389 1.14191 1.23154 0.96926 0.86078 0.84754 1.16540 0.95752 0.89522 1.12933 1.24798 0.92508 0.91939 0.92827 1.81282 1.10842 1.10215 1.10229 1.23217 0.94210 0.79505 0.83287 1.43647 1.19545 1.42415 1.18251 1.93811 1.26743 1.55655 1.78099 1.21759 0.93793 0.98679 0.95434 1.20583 1.00709 0.90979 1.11520 1.19734 0.90020 0.87522 0.96244 1.83938 1.20112 1.28140 1.78092 1.21935 0.78810 0.95787 1.52430 0.87695 1.26535 1.05708 0.93566 0.95391 1.70144 1.38571 0.98804 1.46399 0.84667 0.73738 0.79077 0.79363 1.18551 1.19472 1.17872 0.87910 0.91007 0.90599 0.80238 0.78747 0.73612 0.73044 0.84003 0.86142 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -12.36 10.28 -79.12 -0.81 -13.17 16 3 C 0.04 1.40 6.70 22.58 0.15 1.55 16 4 C -0.10 -2.21 8.79 22.71 0.20 -2.01 16 5 C -0.17 -3.55 5.51 -20.16 -0.11 -3.66 16 6 C 0.12 1.60 9.61 24.31 0.23 1.83 16 7 C -0.14 -2.48 5.39 -19.84 -0.11 -2.58 16 8 C 0.29 6.38 15.36 88.33 1.36 7.74 16 9 N -0.45 -11.84 18.54 19.00 0.35 -11.49 16 10 C 0.46 9.89 3.84 86.52 0.33 10.22 16 11 N -0.71 -9.55 8.43 -51.03 -0.43 -9.98 16 12 S -0.68 -22.37 29.00 -56.49 -1.64 -24.01 16 13 C -0.08 -2.28 8.04 22.37 0.18 -2.10 16 14 C -0.22 -8.40 9.09 22.09 0.20 -8.20 16 15 C 0.12 5.20 6.68 22.85 0.15 5.35 16 16 O -0.20 -11.06 9.52 -5.67 -0.05 -11.11 16 17 C -0.41 -22.56 9.48 67.94 0.64 -21.91 16 18 H 0.11 5.27 5.18 -2.91 -0.02 5.26 16 19 C -0.01 -0.63 5.49 84.86 0.47 -0.16 16 20 N -0.90 -52.56 13.67 21.63 0.30 -52.26 16 21 Si 1.01 40.87 29.55 68.60 2.03 42.89 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.09 7.65 -2.38 -0.02 1.07 16 27 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 28 H 0.18 2.17 6.29 -2.91 -0.02 2.15 16 29 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.43 2.86 8.81 -92.71 -0.82 2.04 16 31 H 0.43 5.38 8.81 -92.71 -0.82 4.56 16 32 H 0.14 4.34 4.14 -6.99 -0.03 4.31 16 33 H 0.12 5.02 5.61 -2.91 -0.02 5.00 16 34 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -81.75 322.75 4.11 -77.64 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.44 Total: 13.98 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.81 Total: -12.48 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: 0.22 Total: -73.73 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.87 Total: -24.29 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: -22.37 SS G_CDS: -1.64 Total: -24.01 kcal Total: -81.75 4.11 -77.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006627906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.535 kcal (2) G-P(sol) polarization free energy of solvation -81.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds