Wall clock time and date at job start Fri Apr 10 2020 14:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.35758 * 119.62714 * 269.72368 * 14 13 11 16 16 C 1.35352 * 120.70194 * 179.76327 * 15 14 13 17 17 C 1.40198 * 119.94910 * 0.50916 * 16 15 14 18 18 C 1.36398 * 119.26068 * 359.75175 * 17 16 15 19 19 C 1.50699 * 120.34223 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47490 * 359.97222 * 19 18 17 21 21 F 1.39898 * 109.47202 * 119.97955 * 19 18 17 22 22 F 1.39904 * 109.47049 * 239.97389 * 19 18 17 23 23 C 1.34664 * 119.62311 * 89.99786 * 14 13 11 24 24 O 1.22059 * 119.98433 * 0.02562 * 23 14 13 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 27 27 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 28 28 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 30 30 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 31 31 H 1.07997 * 119.64776 * 0.02562 * 15 14 13 32 32 H 1.08004 * 120.02773 * 180.28145 * 16 15 14 33 33 H 1.07998 * 120.36528 * 179.72425 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 1.6687 -7.8808 1.1832 16 6 0.9880 -9.0504 1.2085 17 6 0.6281 -9.6769 0.0071 18 6 0.9671 -9.0919 -1.1775 19 6 0.5920 -9.7438 -2.4834 20 9 -0.0956 -10.9353 -2.2293 21 9 -0.2275 -8.8797 -3.2175 22 9 1.7512 -10.0214 -3.2159 23 6 1.6693 -7.8746 -1.1675 24 8 1.9797 -7.3406 -2.2203 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4354 0.0021 29 1 3.3612 -5.9713 -0.8858 30 1 3.3585 -5.9707 0.8942 31 1 1.9470 -7.4044 2.1116 32 1 0.7254 -9.5027 2.1535 33 1 0.0888 -10.6125 0.0194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031814012.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:53 Heat of formation + Delta-G solvation = -212.929610 kcal Electronic energy + Delta-G solvation = -24589.851656 eV Core-core repulsion = 20200.287394 eV Total energy + Delta-G solvation = -4389.564262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.16777 -48.70770 -48.62099 -42.70641 -40.38176 -38.21540 -36.35978 -35.90684 -34.42581 -31.85535 -30.50117 -28.56172 -27.45595 -25.11784 -23.91503 -23.87526 -21.69190 -19.88602 -19.71682 -19.52949 -19.15435 -18.31524 -17.95915 -17.88004 -17.41005 -16.67931 -16.48454 -16.37694 -15.75567 -15.57779 -15.47154 -15.39079 -15.07755 -14.81990 -14.79092 -14.65039 -14.30583 -14.18002 -14.04131 -13.55696 -13.24903 -13.14508 -12.97371 -12.78833 -12.67796 -12.26299 -11.80985 -11.54619 -11.34212 -10.86646 -10.81927 -9.94127 -9.29625 -8.30968 -6.48123 -0.53064 0.74602 1.16579 1.43172 1.47042 1.54938 1.55481 1.76233 2.16897 2.35067 2.57913 2.76025 3.02066 3.04384 3.40475 3.55151 3.66157 3.78097 3.89943 3.97797 4.17812 4.26704 4.60014 4.87335 5.02323 5.07320 5.18935 5.41106 5.41960 5.61432 5.79055 5.80753 6.61510 6.67750 6.77517 7.19718 7.35882 8.80945 Molecular weight = 304.08amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.003118 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.230533 B = 8978.934939 C = 9337.218559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.268 3.732 10 N -0.698 5.698 11 C 0.482 3.518 12 O -0.595 6.595 13 C 0.079 3.921 14 N -0.478 5.478 15 C 0.181 3.819 16 C -0.236 4.236 17 C 0.080 3.920 18 C -0.372 4.372 19 C 0.532 3.468 20 F -0.168 7.168 21 F -0.193 7.193 22 F -0.184 7.184 23 C 0.525 3.475 24 O -0.587 6.587 25 H 0.269 0.731 26 H -0.022 1.022 27 H -0.004 1.004 28 H 0.414 0.586 29 H 0.132 0.868 30 H 0.191 0.809 31 H 0.219 0.781 32 H 0.208 0.792 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -21.747 7.570 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.145 3.855 10 N -0.348 5.348 11 C 0.268 3.732 12 O -0.477 6.477 13 C -0.045 4.045 14 N -0.185 5.185 15 C 0.053 3.947 16 C -0.257 4.257 17 C 0.057 3.943 18 C -0.377 4.377 19 C 0.478 3.522 20 F -0.149 7.149 21 F -0.175 7.175 22 F -0.166 7.166 23 C 0.328 3.672 24 O -0.472 6.472 25 H 0.077 0.923 26 H -0.004 1.004 27 H 0.014 0.986 28 H 0.250 0.750 29 H 0.150 0.850 30 H 0.208 0.792 31 H 0.236 0.764 32 H 0.224 0.776 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.085 -21.394 6.850 23.555 hybrid contribution -0.030 1.106 -0.870 1.408 sum 7.055 -20.288 5.980 22.296 Atomic orbital electron populations 1.70130 1.08358 1.28682 1.49864 1.26076 0.95738 1.03987 0.93801 0.85205 0.77895 0.76536 0.79578 1.18991 1.21309 1.18105 1.21598 0.94465 0.90391 1.53050 0.89407 1.18552 0.88644 0.84238 0.94094 1.46073 1.11589 1.05068 1.72048 1.21486 0.89907 0.85436 0.76396 1.90704 1.19224 1.85379 1.52371 1.22119 0.93097 0.78550 1.10735 1.45105 1.46200 1.19883 1.07269 1.23294 0.89161 0.92578 0.89691 1.21281 1.06753 0.97491 1.00192 1.21951 0.85078 0.97287 0.89966 1.20601 1.20073 1.02136 0.94883 1.17673 0.74214 0.75868 0.84475 1.93143 1.80134 1.47577 1.94040 1.93189 1.73725 1.70668 1.79903 1.93174 1.49775 1.93793 1.79818 1.16591 0.81073 0.85935 0.83600 1.90987 1.58201 1.66804 1.31189 0.92251 1.00376 0.98616 0.74988 0.85012 0.79237 0.76408 0.77553 0.80259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.98 41.53 29.54 68.60 2.03 43.56 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.56 -29.49 9.28 25.60 0.24 -29.25 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.31 5.43 85.63 0.46 14.78 16 10 N -0.70 -27.33 5.55 -466.78 -2.59 -29.92 16 11 C 0.48 17.74 7.90 87.66 0.69 18.43 16 12 O -0.60 -28.48 16.43 -3.03 -0.05 -28.53 16 13 C 0.08 1.77 5.82 85.63 0.50 2.27 16 14 N -0.48 -11.43 2.07 -655.07 -1.36 -12.78 16 15 C 0.18 2.38 10.28 83.42 0.86 3.24 16 16 C -0.24 -2.37 10.01 22.08 0.22 -2.15 16 17 C 0.08 1.26 9.48 22.32 0.21 1.47 16 18 C -0.37 -10.05 5.38 -19.73 -0.11 -10.16 16 19 C 0.53 15.77 3.02 71.24 0.21 15.98 16 20 F -0.17 -3.89 16.00 44.97 0.72 -3.17 16 21 F -0.19 -6.99 17.01 44.97 0.76 -6.23 16 22 F -0.18 -5.84 17.01 44.97 0.76 -5.08 16 23 C 0.53 17.17 7.33 84.82 0.62 17.79 16 24 O -0.59 -24.77 15.64 -5.51 -0.09 -24.86 16 25 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 26 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.41 12.62 8.32 -92.71 -0.77 11.85 16 29 H 0.13 3.03 7.39 -2.39 -0.02 3.01 16 30 H 0.19 1.65 8.01 -2.39 -0.02 1.63 16 31 H 0.22 0.71 8.03 -2.91 -0.02 0.69 16 32 H 0.21 0.11 8.06 -2.91 -0.02 0.08 16 33 H 0.18 1.63 7.18 -2.91 -0.02 1.61 16 Total: -1.00 -89.91 312.39 5.26 -84.65 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.41 Total: 4.87 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 4.38 Total: 33.06 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -3.66 Total: -98.28 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.14 Total: -53.39 kcal Atomic # 9 Polarization: -16.72 SS G_CDS: 2.25 Total: -14.47 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -89.91 5.26 -84.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031814012.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.279 kcal (2) G-P(sol) polarization free energy of solvation -89.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds