Wall clock time and date at job start Fri Apr 10 2020 14:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99537 * 2 1 4 4 C 1.34777 * 120.00199 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 2 1 7 7 H 1.08995 * 108.70287 * 61.46530 * 6 4 2 8 8 C 1.54567 * 108.75077 * 303.36334 * 6 4 2 9 9 S 1.84215 * 101.32144 * 215.93494 * 8 6 4 10 10 C 1.84070 * 93.91346 * 32.25811 * 9 8 6 11 11 N 1.45492 * 108.75296 * 179.72481 * 6 4 2 12 12 C 1.34779 * 122.42997 * 299.90704 * 11 6 4 13 13 O 1.21287 * 120.00113 * 0.02562 * 12 11 6 14 14 C 1.50697 * 120.00427 * 180.02562 * 12 11 6 15 15 S 1.80999 * 109.47383 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00194 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99799 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00364 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99631 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00046 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47436 * 59.99979 * 20 18 16 22 22 H 1.48502 * 109.46908 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47316 * 299.99506 * 20 18 16 24 24 H 1.09004 * 109.47189 * 269.99454 * 1 2 3 25 25 H 1.09001 * 109.47567 * 29.99407 * 1 2 3 26 26 H 1.09005 * 109.47076 * 149.99913 * 1 2 3 27 27 H 1.08998 * 109.46921 * 269.99744 * 3 2 1 28 28 H 1.08994 * 109.46996 * 30.00327 * 3 2 1 29 29 H 1.09001 * 109.46578 * 150.00190 * 3 2 1 30 30 H 1.08999 * 111.05080 * 333.94603 * 8 6 4 31 31 H 1.08997 * 111.05177 * 97.92363 * 8 6 4 32 32 H 1.08998 * 110.77886 * 208.27407 * 10 9 8 33 33 H 1.09001 * 110.77793 * 84.84873 * 10 9 8 34 34 H 1.08997 * 109.47533 * 300.00560 * 14 12 11 35 35 H 1.09004 * 109.47142 * 60.00482 * 14 12 11 36 36 H 0.97009 * 119.99850 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0057 7 1 3.9916 -0.6765 0.9156 8 6 4.1478 -0.3587 -1.2123 9 16 5.6510 -1.3129 -1.6851 10 6 4.9507 -2.9268 -1.1438 11 7 4.1137 -2.5448 0.0104 12 6 3.8049 -3.4096 0.9969 13 8 3.1126 -3.0488 1.9251 14 6 4.3198 -4.8250 0.9468 15 16 3.7372 -5.7309 2.4015 16 6 4.4657 -7.3054 2.0935 17 1 5.0633 -7.4599 1.2071 18 6 4.2717 -8.3472 2.9899 19 7 3.5439 -8.1587 4.0704 20 14 5.0447 -10.0162 2.6637 21 1 6.5211 -9.8729 2.5943 22 1 4.6885 -10.9498 3.7622 23 1 4.5383 -10.5529 1.3750 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 2.3791 1.5834 -1.0277 28 1 1.6083 2.0284 0.5139 29 1 3.1498 1.1385 0.5138 30 1 3.4116 -0.3642 -2.0161 31 1 4.4052 0.6611 -0.9263 32 1 5.7436 -3.6091 -0.8375 33 1 4.3425 -3.3686 -1.9331 34 1 3.9530 -5.3134 0.0441 35 1 5.4098 -4.8150 0.9371 36 1 3.4086 -8.8867 4.6971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066649673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:31 Heat of formation + Delta-G solvation = -66.841835 kcal Electronic energy + Delta-G solvation = -20874.312391 eV Core-core repulsion = 17611.136532 eV Total energy + Delta-G solvation = -3263.175858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89517 -40.08826 -37.28924 -36.70405 -34.60201 -33.28321 -30.50760 -28.73035 -28.50134 -27.69160 -27.31589 -24.49478 -21.86080 -20.21060 -19.63741 -18.78444 -18.51183 -17.81824 -16.90854 -16.87330 -16.78439 -16.67489 -16.25830 -15.72372 -15.20579 -14.93461 -14.71803 -14.45485 -14.37198 -14.10593 -13.72067 -13.59907 -13.42610 -13.21047 -13.16743 -13.02250 -12.86918 -12.68311 -12.60865 -12.11163 -11.77613 -11.16955 -11.14069 -10.84496 -10.31915 -10.01101 -9.73218 -8.97313 -8.70231 -8.35752 -6.15030 0.46152 0.81350 1.09017 1.35762 1.42470 1.43793 1.48885 1.54410 1.77938 2.09827 2.25695 2.98372 2.98871 3.22052 3.35554 3.61150 3.81373 3.93325 4.17568 4.22204 4.24090 4.29380 4.33788 4.39451 4.42856 4.46481 4.74766 4.87821 4.88459 5.01572 5.39679 5.45936 5.87509 6.18139 6.22446 6.93422 7.04882 7.09303 8.73532 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.003914 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.486221 B = 7151.438554 C = 8134.290654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.618 5.618 3 C 0.059 3.941 4 C 0.494 3.506 5 O -0.566 6.566 6 C 0.117 3.883 7 H 0.116 0.884 8 C -0.052 4.052 9 S -0.249 6.249 10 C 0.146 3.854 11 N -0.604 5.604 12 C 0.556 3.444 13 O -0.541 6.541 14 C -0.121 4.121 15 S -0.147 6.147 16 C -0.548 4.548 17 H 0.084 0.916 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.172 0.828 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 22.609 -15.398 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.353 5.353 3 C -0.082 4.082 4 C 0.279 3.721 5 O -0.444 6.444 6 C 0.008 3.992 7 H 0.134 0.866 8 C -0.200 4.200 9 S -0.023 6.023 10 C -0.087 4.087 11 N -0.341 5.341 12 C 0.343 3.657 13 O -0.417 6.417 14 C -0.272 4.272 15 S 0.080 5.920 16 C -0.696 4.696 17 H 0.102 0.898 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.065 0.935 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.190 0.810 32 H 0.147 0.853 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.895 22.858 -14.363 27.062 hybrid contribution -0.329 -1.984 -0.222 2.023 sum 1.566 20.874 -14.585 25.513 Atomic orbital electron populations 1.21714 0.78553 1.03667 1.01834 1.47825 1.07725 1.06594 1.73120 1.22421 0.97830 0.83579 1.04367 1.21242 0.90727 0.83970 0.76147 1.90761 1.70497 1.33172 1.49982 1.21326 0.90994 0.84067 1.02861 0.86648 1.24842 0.96131 1.02373 0.96700 1.88361 1.25075 1.05041 1.83777 1.24504 0.96751 0.97648 0.89783 1.48129 1.52403 1.10395 1.23188 1.19848 0.78703 0.86360 0.80809 1.90683 1.37489 1.78247 1.35255 1.23324 1.05107 0.94333 1.04476 1.85629 1.69711 1.09240 1.27430 1.23172 1.37523 0.96715 1.12154 0.89784 1.26151 0.95352 1.03653 0.93891 1.70187 1.38228 1.34497 1.11929 0.84981 0.78911 0.75698 0.78262 1.18367 1.20307 1.18731 0.93478 0.87009 0.93168 0.88959 0.88670 0.90045 0.86444 0.81018 0.85273 0.87507 0.87879 0.86745 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 10.44 127.77 1.33 2.88 16 2 N -0.62 -11.87 3.27 -871.87 -2.85 -14.73 16 3 C 0.06 0.42 8.80 127.77 1.12 1.55 16 4 C 0.49 14.21 6.38 87.66 0.56 14.77 16 5 O -0.57 -23.47 14.17 15.54 0.22 -23.25 16 6 C 0.12 2.71 2.13 44.97 0.10 2.81 16 7 H 0.12 2.59 7.46 -2.39 -0.02 2.58 16 8 C -0.05 -0.64 5.25 72.52 0.38 -0.26 16 9 S -0.25 -4.24 23.43 -56.49 -1.32 -5.57 16 10 C 0.15 3.21 7.21 127.56 0.92 4.13 16 11 N -0.60 -18.06 2.76 -807.48 -2.23 -20.29 16 12 C 0.56 23.01 6.76 87.66 0.59 23.60 16 13 O -0.54 -27.33 14.53 15.52 0.23 -27.10 16 14 C -0.12 -5.22 4.95 71.24 0.35 -4.87 16 15 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 16 C -0.55 -32.18 9.50 67.95 0.65 -31.54 16 17 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 18 C 0.01 0.83 5.49 84.86 0.47 1.30 16 19 N -0.91 -57.35 13.22 21.65 0.29 -57.06 16 20 Si 1.00 44.42 29.55 68.60 2.03 46.44 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 1.03 8.07 -2.39 -0.02 1.01 16 26 H 0.05 1.19 7.42 -2.38 -0.02 1.17 16 27 H 0.09 0.14 7.65 -2.39 -0.02 0.12 16 28 H 0.09 0.38 8.07 -2.39 -0.02 0.37 16 29 H 0.08 0.48 5.62 -2.39 -0.01 0.47 16 30 H 0.12 1.24 7.85 -2.39 -0.02 1.23 16 31 H 0.17 0.69 6.63 -2.39 -0.02 0.67 16 32 H 0.13 2.64 7.13 -2.39 -0.02 2.62 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 4.16 8.14 -2.40 -0.02 4.14 16 35 H 0.11 4.31 7.63 -2.39 -0.02 4.29 16 36 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -90.16 323.83 2.75 -87.41 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.09 Total: 9.53 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.47 Total: 14.37 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -4.80 Total: -92.09 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: 0.45 Total: -50.35 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -12.82 SS G_CDS: -2.49 Total: -15.31 kcal Total: -90.16 2.75 -87.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066649673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.563 kcal (2) G-P(sol) polarization free energy of solvation -90.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds