Wall clock time and date at job start Fri Apr 10 2020 14:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 120.00013 * 2 1 4 4 H 1.48501 * 109.46837 * 269.99730 * 3 2 1 5 5 H 1.48499 * 109.47259 * 29.99408 * 3 2 1 6 6 H 1.48498 * 109.47407 * 149.99451 * 3 2 1 7 7 C 1.38942 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00616 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99965 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00297 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99522 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00110 * 180.02562 * 10 9 7 13 13 S 1.81403 * 109.47019 * 179.97438 * 12 10 9 14 14 C 1.76194 * 102.99960 * 179.97438 * 13 12 10 15 15 N 1.33725 * 125.59277 * 359.97438 * 14 13 12 16 16 C 1.30877 * 109.78521 * 180.02562 * 15 14 13 17 17 N 1.34665 * 108.18198 * 0.02562 * 16 15 14 18 18 C 1.40129 * 126.77285 * 179.97438 * 17 16 15 19 19 C 1.38853 * 120.06677 * 359.72453 * 18 17 16 20 20 C 1.38118 * 119.92927 * 179.72434 * 19 18 17 21 21 C 1.38285 * 120.06560 * 0.54981 * 20 19 18 22 22 C 1.38288 * 120.13827 * 359.72813 * 21 20 19 23 23 C 1.38112 * 120.06793 * 359.97438 * 22 21 20 24 24 N 1.31293 * 125.59080 * 180.02562 * 14 13 12 25 25 H 0.96998 * 120.00075 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00718 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47175 * 60.00055 * 12 10 9 28 28 H 1.09005 * 109.47099 * 299.99655 * 12 10 9 29 29 H 1.07998 * 125.90399 * 180.26644 * 16 15 14 30 30 H 1.07998 * 120.03654 * 359.97438 * 19 18 17 31 31 H 1.07993 * 119.96802 * 180.29767 * 20 19 18 32 32 H 1.08003 * 119.93095 * 179.74356 * 21 20 19 33 33 H 1.07994 * 119.96575 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.03536 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3705 0.0022 13 16 6.1655 -4.0807 0.0027 14 6 7.9162 -3.8821 0.0033 15 7 8.5669 -2.7139 0.0029 16 6 9.8584 -2.9262 0.0030 17 7 10.0655 -4.2568 0.0029 18 6 11.3036 -4.9131 0.0024 19 6 12.4810 -4.1771 -0.0038 20 6 13.6998 -4.8269 0.0016 21 6 13.7482 -6.2089 0.0016 22 6 12.5773 -6.9446 0.0020 23 6 11.3554 -6.3007 0.0028 24 7 8.7958 -4.8568 0.0033 25 1 -0.4850 0.8400 -0.0004 26 1 3.8649 -0.3633 0.0014 27 1 5.9234 -1.8570 0.8927 28 1 5.9248 -1.8562 -0.8873 29 1 10.6252 -2.1657 0.0068 30 1 12.4439 -3.0978 -0.0087 31 1 14.6160 -4.2551 0.0016 32 1 14.7025 -6.7147 0.0016 33 1 12.6183 -8.0238 0.0024 34 1 10.4413 -6.8758 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076610259.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:27 Heat of formation + Delta-G solvation = 94.561010 kcal Electronic energy + Delta-G solvation = -20217.460649 eV Core-core repulsion = 16858.132543 eV Total energy + Delta-G solvation = -3359.328106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.073 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43615 -39.55306 -38.39241 -34.50348 -34.12023 -31.95931 -31.80894 -31.17766 -29.87585 -29.39969 -24.79689 -24.29472 -23.81979 -21.78828 -21.59879 -19.59810 -18.89175 -18.51088 -16.97768 -16.56946 -16.19276 -16.01154 -15.34032 -15.25200 -14.88446 -14.69875 -14.61528 -13.95902 -13.68001 -13.50927 -13.32780 -12.74634 -12.54313 -12.27097 -12.20432 -12.04721 -11.52105 -11.37332 -11.20827 -10.64361 -10.44844 -10.27721 -10.21656 -10.03886 -9.67136 -9.54798 -8.92645 -8.77801 -8.28319 -7.47544 -6.37994 -3.90427 0.31723 0.80674 1.10844 1.66125 2.14450 2.39571 2.53916 3.00270 3.04813 3.13086 3.28456 3.56814 3.98801 4.05189 4.14102 4.36757 4.49546 4.54428 4.65975 4.83476 4.91965 5.11898 5.12625 5.40351 5.52033 5.56045 5.60128 5.76903 5.80592 5.85338 5.98321 6.03404 6.23606 6.68296 7.46203 7.62484 8.02777 8.46495 8.84154 9.31757 9.65705 10.74211 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.002466 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.833536 B =11351.838846 C =12028.526232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.308 4.308 8 H 0.123 0.877 9 N -0.575 5.575 10 C 0.463 3.537 11 O -0.564 6.564 12 C -0.137 4.137 13 S 0.106 5.894 14 C 0.196 3.804 15 N -0.531 5.531 16 C 0.268 3.732 17 N -0.335 5.335 18 C 0.156 3.844 19 C -0.138 4.138 20 C -0.094 4.094 21 C -0.127 4.127 22 C -0.096 4.096 23 C -0.113 4.113 24 N -0.293 5.293 25 H 0.275 0.725 26 H 0.374 0.626 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.223 0.777 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.127 -5.779 -0.009 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.141 0.859 9 N -0.213 5.213 10 C 0.247 3.753 11 O -0.448 6.448 12 C -0.290 4.290 13 S 0.333 5.667 14 C -0.192 4.192 15 N -0.258 5.258 16 C -0.029 4.029 17 N -0.119 5.119 18 C 0.063 3.937 19 C -0.159 4.159 20 C -0.112 4.112 21 C -0.146 4.146 22 C -0.114 4.114 23 C -0.133 4.133 24 N -0.123 5.123 25 H 0.086 0.914 26 H 0.207 0.793 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.239 0.761 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 28.478 -7.723 -0.008 29.507 hybrid contribution 1.725 2.862 0.016 3.342 sum 30.203 -4.860 0.008 30.591 Atomic orbital electron populations 1.69618 1.05660 1.27749 1.48293 1.25053 0.95529 0.98095 0.97252 0.86676 0.79899 0.83861 0.79085 1.19423 1.19993 1.19280 1.19461 0.78793 0.96880 1.48509 0.85947 1.42067 1.07599 1.05857 1.65756 1.18765 0.86092 0.85125 0.85341 1.90612 1.68777 1.30518 1.54849 1.23703 0.99334 0.98325 1.07591 1.86501 0.81712 1.07505 1.91031 1.27084 1.03521 0.88477 1.00083 1.70985 1.03174 1.26539 1.25148 1.26129 0.95299 0.85816 0.95656 1.47746 1.04944 1.05504 1.53721 1.17623 0.81227 0.92422 1.02419 1.20834 0.90674 1.00130 1.04255 1.20986 0.96923 0.94676 0.98651 1.21288 0.98703 0.94126 1.00499 1.21132 0.91461 1.00535 0.98284 1.21035 0.99684 0.92021 1.00601 1.78427 0.86136 1.18757 1.28949 0.91405 0.79276 0.87304 0.87289 0.76052 0.85063 0.84814 0.85292 0.84884 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.17 13.96 55.50 0.77 -24.39 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.61 10.16 -14.94 -0.15 -8.76 16 8 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 9 N -0.57 -13.64 5.09 -10.96 -0.06 -13.69 16 10 C 0.46 10.59 7.80 -10.98 -0.09 10.50 16 11 O -0.56 -15.11 15.44 5.54 0.09 -15.02 16 12 C -0.14 -2.42 6.05 36.00 0.22 -2.20 16 13 S 0.11 1.88 21.30 -107.50 -2.29 -0.41 16 14 C 0.20 3.21 8.27 -90.90 -0.75 2.46 16 15 N -0.53 -7.77 10.76 -14.72 -0.16 -7.93 16 16 C 0.27 2.97 11.97 -90.40 -1.08 1.89 16 17 N -0.33 -4.14 3.81 -11.82 -0.05 -4.19 16 18 C 0.16 1.54 6.69 -83.61 -0.56 0.98 16 19 C -0.14 -0.93 9.47 -39.40 -0.37 -1.30 16 20 C -0.09 -0.50 10.04 -39.61 -0.40 -0.89 16 21 C -0.13 -0.69 10.04 -39.55 -0.40 -1.09 16 22 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 23 C -0.11 -1.06 9.68 -39.40 -0.38 -1.44 16 24 N -0.29 -4.59 12.07 30.14 0.36 -4.23 16 25 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 27 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 29 H 0.22 1.24 7.09 -52.49 -0.37 0.86 16 30 H 0.13 0.55 6.80 -52.49 -0.36 0.19 16 31 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 32 H 0.13 0.40 8.06 -52.48 -0.42 -0.03 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.14 1.45 7.74 -52.49 -0.41 1.04 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -34.76 320.16 -8.71 -43.47 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.04 Total: 6.98 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -4.46 Total: 0.23 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.88 Total: -54.43 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.29 Total: -0.41 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.76 -8.71 -43.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610259.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.032 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds