Wall clock time and date at job start Fri Apr 10 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 120.00013 * 2 1 4 4 H 1.48501 * 109.46837 * 269.99730 * 3 2 1 5 5 H 1.48499 * 109.47259 * 29.99408 * 3 2 1 6 6 H 1.48498 * 109.47407 * 149.99451 * 3 2 1 7 7 C 1.38942 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00616 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99965 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00297 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99522 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00110 * 180.02562 * 10 9 7 13 13 S 1.81403 * 109.47019 * 179.97438 * 12 10 9 14 14 C 1.76194 * 102.99960 * 179.97438 * 13 12 10 15 15 N 1.33725 * 125.59277 * 359.97438 * 14 13 12 16 16 C 1.30877 * 109.78521 * 180.02562 * 15 14 13 17 17 N 1.34665 * 108.18198 * 0.02562 * 16 15 14 18 18 C 1.40129 * 126.77285 * 179.97438 * 17 16 15 19 19 C 1.38853 * 120.06677 * 359.72453 * 18 17 16 20 20 C 1.38118 * 119.92927 * 179.72434 * 19 18 17 21 21 C 1.38285 * 120.06560 * 0.54981 * 20 19 18 22 22 C 1.38288 * 120.13827 * 359.72813 * 21 20 19 23 23 C 1.38112 * 120.06793 * 359.97438 * 22 21 20 24 24 N 1.31293 * 125.59080 * 180.02562 * 14 13 12 25 25 H 0.96998 * 120.00075 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00718 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47175 * 60.00055 * 12 10 9 28 28 H 1.09005 * 109.47099 * 299.99655 * 12 10 9 29 29 H 1.07998 * 125.90399 * 180.26644 * 16 15 14 30 30 H 1.07998 * 120.03654 * 359.97438 * 19 18 17 31 31 H 1.07993 * 119.96802 * 180.29767 * 20 19 18 32 32 H 1.08003 * 119.93095 * 179.74356 * 21 20 19 33 33 H 1.07994 * 119.96575 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.03536 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3705 0.0022 13 16 6.1655 -4.0807 0.0027 14 6 7.9162 -3.8821 0.0033 15 7 8.5669 -2.7139 0.0029 16 6 9.8584 -2.9262 0.0030 17 7 10.0655 -4.2568 0.0029 18 6 11.3036 -4.9131 0.0024 19 6 12.4810 -4.1771 -0.0038 20 6 13.6998 -4.8269 0.0016 21 6 13.7482 -6.2089 0.0016 22 6 12.5773 -6.9446 0.0020 23 6 11.3554 -6.3007 0.0028 24 7 8.7958 -4.8568 0.0033 25 1 -0.4850 0.8400 -0.0004 26 1 3.8649 -0.3633 0.0014 27 1 5.9234 -1.8570 0.8927 28 1 5.9248 -1.8562 -0.8873 29 1 10.6252 -2.1657 0.0068 30 1 12.4439 -3.0978 -0.0087 31 1 14.6160 -4.2551 0.0016 32 1 14.7025 -6.7147 0.0016 33 1 12.6183 -8.0238 0.0024 34 1 10.4413 -6.8758 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076610259.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:26 Heat of formation + Delta-G solvation = 71.708376 kcal Electronic energy + Delta-G solvation = -20218.451614 eV Core-core repulsion = 16858.132543 eV Total energy + Delta-G solvation = -3360.319070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.073 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.39428 -40.32103 -40.10745 -36.14869 -35.28080 -33.86952 -32.80700 -31.85644 -31.18087 -30.39963 -26.61748 -25.29882 -24.54281 -22.59744 -22.34957 -21.50950 -20.48018 -19.60753 -18.14844 -17.78009 -17.18718 -17.17975 -16.72683 -16.34217 -16.18302 -15.85342 -15.45620 -15.15478 -14.88252 -14.63272 -14.42829 -14.25802 -13.96857 -13.81480 -13.45042 -12.96720 -12.65416 -12.44806 -12.19459 -12.04392 -11.99739 -11.65114 -11.58500 -11.37663 -11.31562 -10.72437 -10.33328 -10.04274 -9.64598 -8.74520 -8.45041 -6.07774 -0.37672 -0.15196 0.31450 0.85743 1.03924 1.31197 1.33357 1.34380 1.45111 1.53070 1.76808 2.21295 2.74660 2.76006 3.09758 3.20169 3.52321 3.87603 3.93981 3.98880 4.09817 4.20333 4.26521 4.33659 4.40898 4.55632 4.76534 4.89551 5.01287 5.30610 5.36199 5.47194 5.50174 5.69759 5.86996 6.02160 6.47363 6.63579 6.77068 7.26190 7.77221 8.71526 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.002466 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.833536 B =11351.838846 C =12028.526232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.332 4.332 8 H 0.061 0.939 9 N -0.572 5.572 10 C 0.465 3.535 11 O -0.609 6.609 12 C -0.115 4.115 13 S 0.061 5.939 14 C 0.189 3.811 15 N -0.554 5.554 16 C 0.279 3.721 17 N -0.331 5.331 18 C 0.118 3.882 19 C -0.130 4.130 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.102 4.102 23 C -0.138 4.138 24 N -0.322 5.322 25 H 0.282 0.718 26 H 0.393 0.607 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.278 0.722 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.541 -3.166 0.025 35.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.154 1.154 7 C -0.461 4.461 8 H 0.079 0.921 9 N -0.213 5.213 10 C 0.251 3.749 11 O -0.495 6.495 12 C -0.267 4.267 13 S 0.288 5.712 14 C -0.201 4.201 15 N -0.283 5.283 16 C -0.017 4.017 17 N -0.115 5.115 18 C 0.026 3.974 19 C -0.150 4.150 20 C -0.109 4.109 21 C -0.138 4.138 22 C -0.121 4.121 23 C -0.158 4.158 24 N -0.153 5.153 25 H 0.091 0.909 26 H 0.230 0.770 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.293 0.707 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 33.948 -5.134 0.027 34.334 hybrid contribution 0.255 1.831 0.001 1.849 sum 34.203 -3.303 0.028 34.362 Atomic orbital electron populations 1.69788 1.08086 1.29531 1.49102 1.26115 0.96489 1.02723 0.95608 0.85406 0.79592 0.76709 0.80158 1.17930 1.19708 1.15402 1.19031 0.80821 0.95339 1.50939 0.92072 1.41839 1.06056 1.07092 1.66290 1.19654 0.88378 0.84079 0.82791 1.90597 1.70641 1.32297 1.55997 1.23443 0.94608 0.98667 1.10005 1.86612 0.84310 1.08135 1.92143 1.26567 1.02348 0.89535 1.01608 1.70914 1.04728 1.25977 1.26698 1.27117 0.95226 0.86129 0.93236 1.47848 1.04583 1.06127 1.52923 1.18046 0.81114 0.92848 1.05400 1.21233 0.89677 1.01608 1.02504 1.21470 0.97634 0.94862 0.96896 1.21723 0.99210 0.94607 0.98228 1.21365 0.91053 1.01571 0.98080 1.21051 0.99955 0.92395 1.02405 1.78321 0.87790 1.19963 1.29219 0.90855 0.77037 0.84776 0.84684 0.70699 0.82079 0.81330 0.82371 0.83424 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.96 21.66 0.30 -54.84 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 3 Si 0.96 38.22 27.74 68.60 1.90 40.12 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 7 C -0.33 -19.37 10.16 84.04 0.85 -18.51 16 8 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 9 N -0.57 -27.19 5.09 -306.98 -1.56 -28.76 16 10 C 0.46 21.62 7.80 87.65 0.68 22.30 16 11 O -0.61 -34.34 15.44 -3.09 -0.05 -34.39 16 12 C -0.12 -3.96 6.05 71.23 0.43 -3.53 16 13 S 0.06 2.24 21.30 -56.49 -1.20 1.04 16 14 C 0.19 6.14 8.27 180.44 1.49 7.63 16 15 N -0.55 -15.16 10.76 -200.48 -2.16 -17.32 16 16 C 0.28 5.35 11.97 180.27 2.16 7.51 16 17 N -0.33 -7.77 3.81 -191.31 -0.73 -8.50 16 18 C 0.12 2.13 6.69 38.11 0.26 2.39 16 19 C -0.13 -1.23 9.47 22.39 0.21 -1.02 16 20 C -0.09 -0.54 10.04 22.25 0.22 -0.31 16 21 C -0.12 -0.85 10.04 22.29 0.22 -0.62 16 22 C -0.10 -1.21 10.04 22.25 0.22 -0.98 16 23 C -0.14 -2.57 9.68 22.39 0.22 -2.36 16 24 N -0.32 -10.27 12.07 -58.54 -0.71 -10.98 16 25 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.39 15.41 5.76 -92.71 -0.53 14.87 16 27 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 28 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.28 1.62 7.09 -2.91 -0.02 1.60 16 30 H 0.16 0.46 6.80 -2.91 -0.02 0.44 16 31 H 0.17 -0.12 8.06 -2.91 -0.02 -0.15 16 32 H 0.16 0.21 8.06 -2.91 -0.02 0.18 16 33 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.11 2.61 7.74 -2.91 -0.02 2.59 16 Total: -1.00 -83.68 320.16 3.80 -79.88 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.56 Total: 21.29 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 7.44 Total: 12.44 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -4.85 Total: -120.39 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.05 Total: -34.39 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.12 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.20 Total: 1.04 kcal Total: -83.68 3.80 -79.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610259.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.585 kcal (2) G-P(sol) polarization free energy of solvation -83.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds