Wall clock time and date at job start Fri Apr 10 2020 14:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86798 * 119.99735 * 2 1 4 4 H 1.48508 * 109.47228 * 239.99555 * 3 2 1 5 5 H 1.48497 * 109.47447 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47248 * 119.99689 * 3 2 1 7 7 C 1.38796 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00381 * 179.97438 * 7 2 1 9 9 O 1.34862 * 119.99564 * 0.02562 * 7 2 1 10 10 C 1.34772 * 116.99685 * 179.97438 * 9 7 2 11 11 O 1.21547 * 120.00316 * 359.97438 * 10 9 7 12 12 C 1.47407 * 120.00170 * 179.97438 * 10 9 7 13 13 C 1.39844 * 120.08549 * 179.97438 * 12 10 9 14 14 C 1.37638 * 119.91689 * 179.97438 * 13 12 10 15 15 C 1.39156 * 120.08273 * 359.97438 * 14 13 12 16 16 N 1.39411 * 119.91661 * 179.97438 * 15 14 13 17 17 N 1.39946 * 119.77071 * 228.74332 * 16 15 14 18 18 C 1.34638 * 120.46318 * 198.49724 * 17 16 15 19 19 O 1.21283 * 119.85754 * 180.52620 * 18 17 16 20 20 C 1.50621 * 120.28937 * 0.50811 * 18 17 16 21 21 C 1.52953 * 109.57582 * 325.75811 * 20 18 17 22 22 C 1.34486 * 119.65573 * 49.01077 * 16 15 14 23 23 O 1.21276 * 119.89218 * 0.22568 * 22 16 15 24 24 C 1.39155 * 120.16356 * 0.27272 * 15 14 13 25 25 C 1.37636 * 120.08299 * 359.48823 * 24 15 14 26 26 H 0.97001 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03829 * 359.95974 * 13 12 10 28 28 H 1.08001 * 119.95120 * 180.02562 * 14 13 12 29 29 H 0.97004 * 119.76634 * 18.77783 * 17 16 15 30 30 H 1.09000 * 109.45590 * 85.78653 * 20 18 17 31 31 H 1.08999 * 109.45886 * 205.72363 * 20 18 17 32 32 H 1.08993 * 109.45391 * 168.18052 * 21 20 18 33 33 H 1.09005 * 109.44923 * 288.12049 * 21 20 18 34 34 H 1.08004 * 119.95917 * 179.72939 * 24 15 14 35 35 H 1.07998 * 120.04041 * 180.23000 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0083 -1.2020 0.0005 8 1 3.0883 -1.2020 0.0001 9 8 1.3340 -2.3699 0.0005 10 6 2.0680 -3.5002 0.0005 11 8 3.2818 -3.4365 0.0001 12 6 1.3989 -4.8136 0.0011 13 6 2.1589 -5.9875 0.0006 14 6 1.5305 -7.2121 0.0016 15 6 0.1408 -7.2829 0.0038 16 7 -0.4921 -8.5251 0.0043 17 7 -1.5227 -8.7803 -0.9074 18 6 -2.3836 -9.7941 -0.6982 19 8 -3.2669 -10.0114 -1.5003 20 6 -2.2542 -10.6600 0.5275 21 6 -0.7767 -10.8169 0.8905 22 6 -0.1097 -9.4664 0.8856 23 8 0.7788 -9.2289 1.6761 24 6 -0.6188 -6.1170 -0.0009 25 6 0.0025 -4.8888 0.0030 26 1 -0.4850 0.8400 -0.0004 27 1 3.2375 -5.9332 -0.0009 28 1 2.1169 -8.1190 0.0016 29 1 -1.6150 -8.2253 -1.6976 30 1 -2.7847 -10.1948 1.3583 31 1 -2.6847 -11.6409 0.3261 32 1 -0.6917 -11.2601 1.8826 33 1 -0.2905 -11.4645 0.1609 34 1 -1.6972 -6.1759 -0.0036 35 1 -0.5877 -3.9844 0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142569917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:21 Heat of formation + Delta-G solvation = -76.318992 kcal Electronic energy + Delta-G solvation = -23689.676489 eV Core-core repulsion = 19847.892848 eV Total energy + Delta-G solvation = -3841.783641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68172 -39.70229 -39.21567 -38.15393 -36.60855 -35.21553 -34.00867 -32.33900 -32.01446 -30.92349 -29.53906 -26.28611 -25.52165 -24.17282 -22.96279 -22.15901 -20.45233 -19.29104 -18.76642 -17.99744 -17.83338 -17.27875 -17.19426 -15.95858 -15.44763 -15.24476 -15.07684 -14.88823 -14.61405 -14.57318 -14.22792 -14.20185 -13.47190 -13.23783 -13.13141 -13.01543 -12.65507 -12.17742 -12.02872 -11.76304 -11.65273 -11.26608 -10.97126 -10.58215 -10.52973 -10.52288 -10.38935 -9.94700 -9.39740 -9.18022 -8.92445 -8.68899 -8.18529 -6.55242 -4.16787 0.75166 1.35818 1.49651 1.72690 2.23499 2.90725 3.09454 3.13185 3.17131 3.34287 3.84054 3.91867 4.12056 4.19963 4.33001 4.44670 4.49375 4.89375 4.96635 5.03259 5.06285 5.09693 5.14636 5.44712 5.50803 5.67854 5.83532 6.02549 6.10931 6.33840 6.41178 6.55829 6.86807 6.94738 7.08707 7.28072 7.29959 7.77080 7.82549 8.60444 8.93334 9.72000 10.61986 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.029378 B = 0.002983 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.855433 B = 9385.296573 C =10039.408739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.373 4.373 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.427 3.573 11 O -0.552 6.552 12 C -0.077 4.077 13 C -0.057 4.057 14 C -0.104 4.104 15 C 0.125 3.875 16 N -0.360 5.360 17 N -0.513 5.513 18 C 0.523 3.477 19 O -0.523 6.523 20 C -0.141 4.141 21 C -0.136 4.136 22 C 0.517 3.483 23 O -0.500 6.500 24 C -0.132 4.132 25 C -0.059 4.059 26 H 0.273 0.727 27 H 0.143 0.857 28 H 0.132 0.868 29 H 0.427 0.573 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -19.775 0.277 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.116 0.884 9 O -0.109 6.109 10 C 0.275 3.725 11 O -0.451 6.451 12 C -0.079 4.079 13 C -0.076 4.076 14 C -0.125 4.125 15 C 0.034 3.966 16 N -0.180 5.180 17 N -0.265 5.265 18 C 0.310 3.690 19 O -0.395 6.395 20 C -0.181 4.181 21 C -0.176 4.176 22 C 0.306 3.694 23 O -0.370 6.370 24 C -0.152 4.152 25 C -0.078 4.078 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.150 0.850 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.168 -19.776 0.465 20.445 hybrid contribution 0.292 1.120 -0.363 1.213 sum -4.876 -18.656 0.102 19.283 Atomic orbital electron populations 1.69958 1.06106 1.28224 1.44935 1.25402 0.95880 0.99041 0.96012 0.85684 0.78671 0.79009 0.79532 1.19314 1.20247 1.19298 1.21303 0.92631 0.79690 1.51256 0.88365 1.83888 1.39230 1.13300 1.74467 1.20620 0.85927 0.85371 0.80560 1.90645 1.14987 1.87784 1.51675 1.19570 0.93549 0.92043 1.02715 1.21116 1.00956 0.89847 0.95702 1.20842 0.91976 0.98363 1.01330 1.17739 0.91490 0.82545 1.04803 1.44551 1.29608 1.13108 1.30732 1.45633 1.24429 1.35020 1.21436 1.20679 0.79942 0.80118 0.88279 1.90856 1.32232 1.69511 1.46926 1.21792 0.97370 1.02241 0.96674 1.21788 0.94727 0.94137 1.06922 1.20719 0.83700 0.85642 0.79355 1.90858 1.29957 1.79092 1.37139 1.20968 0.99883 0.90989 1.03340 1.21492 0.93881 0.97949 0.94508 0.91718 0.83938 0.85031 0.72831 0.87064 0.86130 0.85998 0.87074 0.85231 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.11 13.67 55.49 0.76 -23.36 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 3 Si 0.95 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.37 -10.77 9.65 30.94 0.30 -10.47 16 8 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 9 O -0.20 -5.65 8.98 -21.77 -0.20 -5.84 16 10 C 0.43 10.64 7.83 34.46 0.27 10.91 16 11 O -0.55 -14.88 15.59 -19.30 -0.30 -15.18 16 12 C -0.08 -1.50 5.88 -104.96 -0.62 -2.12 16 13 C -0.06 -0.96 9.58 -39.20 -0.38 -1.34 16 14 C -0.10 -1.50 8.66 -39.46 -0.34 -1.84 16 15 C 0.13 1.67 5.58 -83.73 -0.47 1.20 16 16 N -0.36 -3.87 3.56 -9.94 -0.04 -3.91 16 17 N -0.51 -4.65 6.01 31.17 0.19 -4.46 16 18 C 0.52 4.61 7.80 -11.09 -0.09 4.52 16 19 O -0.52 -6.36 17.93 5.55 0.10 -6.26 16 20 C -0.14 -0.74 6.15 -27.95 -0.17 -0.91 16 21 C -0.14 -0.75 6.15 -27.94 -0.17 -0.93 16 22 C 0.52 5.37 7.27 -11.15 -0.08 5.29 16 23 O -0.50 -7.01 15.60 5.56 0.09 -6.92 16 24 C -0.13 -1.81 9.68 -39.46 -0.38 -2.19 16 25 C -0.06 -1.01 9.61 -39.20 -0.38 -1.39 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.14 2.35 7.64 -52.49 -0.40 1.95 16 28 H 0.13 1.71 7.38 -52.49 -0.39 1.32 16 29 H 0.43 3.59 8.83 -182.71 -1.61 1.98 16 30 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 35 H 0.15 2.70 7.60 -52.49 -0.40 2.30 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -35.17 318.79 -6.63 -41.80 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.41 Total: 1.89 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -2.60 Total: 1.79 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.91 Total: -31.72 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.31 Total: -34.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.17 -6.63 -41.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142569917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.517 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds