Wall clock time and date at job start Fri Apr 10 2020 14:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47131 * 270.00195 * 3 2 1 5 5 H 1.48503 * 109.47300 * 29.99990 * 3 2 1 6 6 H 1.48496 * 109.47260 * 149.99653 * 3 2 1 7 7 C 1.37876 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00343 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99820 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47097 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47061 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54188 * 68.37484 * 11 10 9 13 13 O 1.42104 * 110.54211 * 291.62440 * 11 10 9 14 14 N 1.65597 * 104.44731 * 179.97438 * 11 10 9 15 15 C 1.46506 * 120.00079 * 65.00319 * 14 11 10 16 16 C 1.52996 * 109.47045 * 164.72323 * 15 14 11 17 17 N 1.46506 * 109.46668 * 180.02562 * 16 15 14 18 18 C 1.33880 * 122.75953 * 269.70359 * 17 16 15 19 19 O 1.21226 * 125.39543 * 359.97438 * 18 17 16 20 20 C 1.51312 * 109.20682 * 179.84596 * 18 17 16 21 21 C 1.54234 * 103.55272 * 0.38699 * 20 18 17 22 22 C 1.33873 * 122.76415 * 90.00427 * 17 16 15 23 23 O 1.21227 * 125.39824 * 359.96752 * 22 17 16 24 24 H 0.97000 * 119.99692 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47512 * 59.99637 * 9 7 2 26 26 H 1.09000 * 109.47136 * 299.99998 * 9 7 2 27 27 H 1.09003 * 109.47318 * 60.00006 * 10 9 7 28 28 H 1.09000 * 109.47101 * 299.99989 * 10 9 7 29 29 H 0.97005 * 120.00050 * 244.72340 * 14 11 10 30 30 H 1.08999 * 109.46682 * 284.72550 * 15 14 11 31 31 H 1.09000 * 109.47243 * 44.71866 * 15 14 11 32 32 H 1.08997 * 109.47099 * 299.99462 * 16 15 14 33 33 H 1.08996 * 109.47715 * 60.00141 * 16 15 14 34 34 H 1.09000 * 110.79634 * 241.78228 * 20 18 17 35 35 H 1.08993 * 110.55116 * 118.87744 * 20 18 17 36 36 H 1.09002 * 110.60413 * 241.25706 * 21 20 18 37 37 H 1.08997 * 110.60026 * 118.29667 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 16 5.8356 -2.6366 0.0009 12 8 6.3342 -2.1463 1.2379 13 8 6.3342 -2.1461 -1.2361 14 7 6.2488 -4.2402 0.0015 15 6 5.9123 -5.0837 -1.1481 16 6 6.7141 -6.3849 -1.0779 17 7 6.3781 -7.2281 -2.2279 18 6 5.3870 -8.1278 -2.2014 19 8 4.6663 -8.3509 -1.2525 20 6 5.3069 -8.8197 -3.5447 21 6 6.4420 -8.1640 -4.3573 22 6 7.0405 -7.1665 -3.3896 23 8 7.9718 -6.4282 -3.6287 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 3.6586 -3.1502 -0.8893 28 1 3.6579 -3.1506 0.8907 29 1 6.7172 -4.6201 0.7613 30 1 4.8467 -5.3122 -1.1315 31 1 6.1563 -4.5558 -2.0700 32 1 7.7797 -6.1563 -1.0946 33 1 6.4701 -6.9129 -0.1561 34 1 4.3418 -8.6370 -4.0172 35 1 5.4825 -9.8898 -3.4349 36 1 6.0415 -7.6551 -5.2341 37 1 7.1836 -8.9075 -4.6494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330786893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:04 Heat of formation + Delta-G solvation = -172.290704 kcal Electronic energy + Delta-G solvation = -22718.305517 eV Core-core repulsion = 19007.804181 eV Total energy + Delta-G solvation = -3710.501335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.86136 -39.65244 -38.28833 -37.43296 -37.10735 -36.63258 -35.92258 -33.96386 -33.50237 -29.46675 -27.92287 -27.07903 -24.53823 -23.29576 -23.23656 -20.83597 -20.23401 -19.43503 -18.70042 -18.35750 -17.81593 -17.49033 -17.32697 -17.09446 -16.40532 -16.18620 -15.71564 -15.67737 -15.27994 -15.24458 -14.87036 -14.83441 -14.62171 -13.85929 -13.81907 -13.45859 -13.32330 -13.22077 -13.10497 -13.05917 -13.01258 -12.88106 -12.26196 -12.06764 -11.96918 -11.73944 -11.65945 -11.37885 -11.08266 -10.98687 -10.85748 -10.53519 -8.37972 -6.44120 -0.80923 0.50660 1.31430 1.33213 1.33835 1.43469 1.70288 1.84293 2.28504 2.67426 2.95919 3.16156 3.23467 3.30368 3.57008 3.66394 3.81803 3.84678 4.00959 4.16383 4.22368 4.27491 4.37995 4.51192 4.55031 4.82759 4.82894 4.94675 4.98717 5.04524 5.07179 5.45303 5.79612 5.97251 6.14882 6.31879 6.61848 6.73211 7.20359 8.77613 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.003501 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.433300 B = 7995.851231 C = 8616.824022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.529 4.529 8 H 0.048 0.952 9 C -0.018 4.018 10 C -0.588 4.588 11 S 2.626 3.374 12 O -0.987 6.987 13 O -0.990 6.990 14 N -1.104 6.104 15 C 0.097 3.903 16 C 0.091 3.909 17 N -0.579 5.579 18 C 0.520 3.480 19 O -0.518 6.518 20 C -0.143 4.143 21 C -0.142 4.142 22 C 0.517 3.483 23 O -0.521 6.521 24 H 0.270 0.730 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.429 0.571 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 -21.856 -8.518 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.749 3.251 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.057 4.057 10 C -0.720 4.720 11 S 2.721 3.279 12 O -0.977 6.977 13 O -0.980 6.980 14 N -0.867 5.867 15 C -0.031 4.031 16 C -0.032 4.032 17 N -0.322 5.322 18 C 0.311 3.689 19 O -0.392 6.392 20 C -0.182 4.182 21 C -0.181 4.181 22 C 0.309 3.691 23 O -0.395 6.395 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.266 0.734 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.017 -20.677 -8.279 26.863 hybrid contribution -0.530 0.636 0.704 1.087 sum 14.487 -20.041 -7.575 25.864 Atomic orbital electron populations 1.70013 1.07900 1.28433 1.51577 1.25881 0.95651 1.03049 0.93905 0.86007 0.79911 0.79302 0.79911 1.18482 1.19869 1.17277 1.21165 0.90232 0.93883 1.51507 0.93339 1.19387 0.97257 0.91001 0.98042 1.30283 1.22872 1.06291 1.12519 1.04366 0.77764 0.72781 0.72956 1.93531 1.79264 1.78836 1.46072 1.93528 1.78476 1.79105 1.46851 1.55126 1.74571 1.28784 1.28181 1.21644 1.00530 0.92119 0.88779 1.21865 1.01557 0.90049 0.89768 1.46930 1.33282 1.36484 1.15534 1.21770 0.77105 0.78159 0.91825 1.90806 1.43141 1.64799 1.40428 1.22609 1.02874 1.03529 0.89144 1.22614 0.99324 0.97978 0.98161 1.21833 0.80823 0.83308 0.83131 1.90810 1.27904 1.41694 1.79073 0.92077 0.94736 0.94922 0.84429 0.83953 0.73368 0.90208 0.90737 0.87770 0.86829 0.83925 0.83291 0.83963 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.93 44.02 27.47 68.60 1.88 45.91 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 7 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 9 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 10 C -0.59 -21.13 6.01 71.98 0.43 -20.69 16 11 S 2.63 86.04 5.46 -56.49 -0.31 85.73 16 12 O -0.99 -37.34 18.08 -127.65 -2.31 -39.64 16 13 O -0.99 -38.37 17.50 -127.65 -2.23 -40.60 16 14 N -1.10 -25.53 5.89 -187.48 -1.10 -26.63 16 15 C 0.10 2.08 6.46 86.38 0.56 2.64 16 16 C 0.09 1.56 5.70 86.38 0.49 2.06 16 17 N -0.58 -8.88 2.55 -756.67 -1.93 -10.81 16 18 C 0.52 7.26 8.08 87.99 0.71 7.97 16 19 O -0.52 -11.52 17.47 -2.86 -0.05 -11.57 16 20 C -0.14 -0.39 7.03 30.46 0.21 -0.17 16 21 C -0.14 -0.41 7.03 30.46 0.21 -0.20 16 22 C 0.52 7.60 8.07 87.99 0.71 8.31 16 23 O -0.52 -12.35 17.48 -2.87 -0.05 -12.40 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.03 1.61 7.20 -2.39 -0.02 1.59 16 26 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 27 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 28 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 29 H 0.43 7.62 8.62 -96.74 -0.83 6.79 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.81 7.69 -2.39 -0.02 1.79 16 32 H 0.10 1.75 7.83 -2.39 -0.02 1.73 16 33 H 0.11 1.68 7.82 -2.39 -0.02 1.66 16 34 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: -1.00 -86.51 334.17 -1.43 -87.94 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.21 Total: 9.14 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.16 Total: -29.37 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -2.74 Total: -95.14 kcal Atomic # 8 Polarization: -99.57 SS G_CDS: -4.64 Total: -104.21 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 86.04 SS G_CDS: -0.31 Total: 85.73 kcal Total: -86.51 -1.43 -87.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330786893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.349 kcal (2) G-P(sol) polarization free energy of solvation -86.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds