Wall clock time and date at job start Fri Apr 10 2020 14:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47307 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54610 * 291.62849 * 11 10 9 13 13 O 1.42105 * 110.54276 * 68.37684 * 11 10 9 14 14 N 1.65603 * 104.45217 * 180.02562 * 11 10 9 15 15 C 1.46829 * 120.12278 * 269.72804 * 14 11 10 16 16 C 1.53233 * 109.31258 * 236.27596 * 15 14 11 17 17 N 1.46989 * 107.41677 * 314.11438 * 16 15 14 18 18 C 1.33406 * 128.23605 * 234.32164 * 17 16 15 19 19 O 1.21509 * 123.19209 * 350.55986 * 18 17 16 20 20 O 1.33990 * 113.62065 * 170.55617 * 18 17 16 21 21 C 1.45827 * 109.48757 * 3.05037 * 20 18 17 22 22 C 1.47849 * 122.85136 * 51.78465 * 17 16 15 23 23 H 1.09003 * 111.63140 * 69.02250 * 22 17 16 24 24 C 1.47092 * 120.12633 * 89.99878 * 14 11 10 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.09002 * 109.53758 * 356.19106 * 15 14 11 31 31 H 1.09001 * 109.53527 * 116.44294 * 15 14 11 32 32 H 1.09001 * 109.97168 * 194.57292 * 16 15 14 33 33 H 1.09000 * 109.79962 * 73.56353 * 16 15 14 34 34 H 1.08997 * 110.51813 * 243.55343 * 21 20 18 35 35 H 1.09007 * 110.51845 * 120.82120 * 21 20 18 36 36 H 1.09003 * 109.74348 * 242.24703 * 24 14 11 37 37 H 1.08999 * 109.74506 * 2.91025 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 16 1.3383 -5.2330 0.0243 12 8 0.6646 -5.4139 1.2623 13 8 0.6639 -5.4254 -1.2117 14 7 2.5204 -6.3927 0.0300 15 6 3.0422 -6.9193 -1.2374 16 6 2.8771 -8.4425 -1.2596 17 7 3.3351 -8.9538 0.0402 18 6 4.2522 -9.8919 0.2817 19 8 4.7363 -10.5885 -0.5883 20 8 4.5891 -9.9932 1.5746 21 6 3.7791 -9.0710 2.3620 22 6 2.8427 -8.4232 1.3293 23 1 1.7974 -8.6824 1.4976 24 6 3.0473 -6.9035 1.3048 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 2.4895 -6.4821 -2.0689 31 1 4.0991 -6.6686 -1.3286 32 1 3.4807 -8.8708 -2.0598 33 1 1.8281 -8.6980 -1.4096 34 1 4.4087 -8.3164 2.8334 35 1 3.2037 -9.6131 3.1126 36 1 4.1101 -6.6738 1.3824 37 1 2.5102 -6.4454 2.1353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372007404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:26 Heat of formation + Delta-G solvation = -129.282232 kcal Electronic energy + Delta-G solvation = -23562.549337 eV Core-core repulsion = 19853.912989 eV Total energy + Delta-G solvation = -3708.636348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00224 -38.01618 -37.41639 -36.88526 -35.65125 -34.10188 -33.99173 -32.46369 -31.26689 -28.71804 -26.23453 -25.64759 -24.06994 -22.39335 -21.75750 -21.03165 -18.68279 -18.01692 -17.51085 -17.42556 -16.63468 -16.62317 -16.20337 -15.66382 -15.30825 -14.94002 -14.65585 -14.57885 -14.35407 -14.11901 -13.81793 -13.52518 -12.73296 -12.65330 -12.47720 -12.33099 -12.00642 -11.87960 -11.78759 -11.40847 -11.32607 -11.16687 -11.06697 -10.98978 -10.80628 -10.50543 -10.49995 -10.03553 -9.75988 -9.31437 -8.81934 -8.58680 -6.20685 -4.26737 0.50630 2.12548 2.48782 2.72000 3.17308 3.19920 3.27686 3.30602 3.75546 4.03901 4.09069 4.20710 4.30411 4.39876 4.58866 4.66301 4.79496 4.88788 4.93810 5.03674 5.14751 5.24354 5.33066 5.40734 5.47256 5.54332 5.62574 5.75165 6.10802 6.30269 6.35164 7.07511 7.18873 7.24203 7.72310 7.77574 8.07853 8.76953 9.38800 10.90248 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.003419 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.847335 B = 8188.246315 C = 8301.044231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.585 4.585 11 S 2.585 3.415 12 O -0.961 6.961 13 O -0.959 6.959 14 N -1.006 6.006 15 C 0.099 3.901 16 C 0.135 3.865 17 N -0.624 5.624 18 C 0.648 3.352 19 O -0.526 6.526 20 O -0.330 6.330 21 C 0.048 3.952 22 C 0.076 3.924 23 H 0.115 0.885 24 C 0.111 3.889 25 H 0.265 0.735 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -15.504 3.310 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.719 4.719 11 S 2.685 3.315 12 O -0.951 6.951 13 O -0.949 6.949 14 N -0.841 5.841 15 C -0.027 4.027 16 C 0.014 3.986 17 N -0.372 5.372 18 C 0.402 3.598 19 O -0.412 6.412 20 O -0.240 6.240 21 C -0.028 4.028 22 C -0.030 4.030 23 H 0.133 0.867 24 C -0.016 4.016 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.136 -16.136 2.924 17.510 hybrid contribution 0.887 1.408 0.077 1.666 sum 7.024 -14.728 3.001 16.591 Atomic orbital electron populations 1.69959 1.06130 1.27206 1.49453 1.25073 0.94979 0.99599 0.94791 0.86408 0.79922 0.83095 0.77841 1.19630 1.20741 1.20743 1.21022 0.93096 0.89678 1.52320 0.91969 1.18985 0.92680 0.90581 0.98924 1.30467 1.13620 1.17588 1.10196 1.05955 0.74803 0.76507 0.74241 1.93533 1.71088 1.85288 1.45211 1.93544 1.70996 1.85077 1.45316 1.57953 1.59506 1.56216 1.10447 1.21821 1.00927 0.93608 0.86321 1.21915 1.01194 0.93365 0.82171 1.48191 1.42077 1.39150 1.07736 1.18261 0.78914 0.80373 0.82283 1.91042 1.59152 1.47511 1.43451 1.87357 1.58640 1.59649 1.18328 1.24286 0.92668 0.92484 0.93350 1.23106 1.00494 0.95876 0.83486 0.86735 1.21906 1.00941 0.91830 0.86895 0.92502 0.94814 0.94812 0.86117 0.86179 0.86774 0.90549 0.87581 0.89838 0.87148 0.86920 0.90151 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.81 9.11 -34.44 -0.31 -14.13 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.66 4.98 -27.89 -0.14 0.52 16 10 C -0.58 -10.07 6.12 37.16 0.23 -9.84 16 11 S 2.59 40.25 5.43 -107.50 -0.58 39.67 16 12 O -0.96 -17.10 16.57 -57.54 -0.95 -18.05 16 13 O -0.96 -17.51 16.55 -57.54 -0.95 -18.47 16 14 N -1.01 -11.13 3.17 -113.35 -0.36 -11.49 16 15 C 0.10 0.95 6.52 -3.74 -0.02 0.93 16 16 C 0.14 1.28 7.08 -3.65 -0.03 1.25 16 17 N -0.62 -6.44 2.98 -170.30 -0.51 -6.95 16 18 C 0.65 8.24 8.88 53.45 0.47 8.72 16 19 O -0.53 -8.63 17.62 -19.09 -0.34 -8.96 16 20 O -0.33 -3.57 11.10 -38.38 -0.43 -4.00 16 21 C 0.05 0.29 7.83 37.53 0.29 0.59 16 22 C 0.08 0.61 4.15 -66.63 -0.28 0.33 16 23 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 24 C 0.11 0.95 5.83 -3.53 -0.02 0.93 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.12 1.87 8.14 -51.92 -0.42 1.44 16 29 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 30 H 0.11 1.10 6.83 -51.93 -0.35 0.74 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.93 7.85 -51.93 -0.41 0.52 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.43 7.55 -51.93 -0.39 0.04 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 37 H 0.11 0.93 6.87 -51.93 -0.36 0.57 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -36.58 321.66 -8.30 -44.88 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -4.84 Total: -2.89 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 0.10 Total: -9.21 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.13 Total: -43.32 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -2.67 Total: -49.48 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 40.25 SS G_CDS: -0.58 Total: 39.67 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.58 -8.30 -44.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372007404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.404 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds