Wall clock time and date at job start Fri Apr 10 2020 14:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.20827 * 119.99929 * 359.97438 * 9 8 7 11 11 O 1.34226 * 120.00338 * 180.02562 * 9 8 7 12 12 C 1.45198 * 117.00202 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47411 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99884 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00293 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00307 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99776 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00442 * 180.02562 * 16 15 13 19 19 N 1.31414 * 119.99837 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00228 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46864 * 59.99680 * 20 18 16 22 22 H 1.48496 * 109.47156 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47092 * 299.99959 * 20 18 16 24 24 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 25 25 C 1.37732 * 120.09997 * 0.02562 * 24 6 5 26 26 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 28 28 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 29 29 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 30 30 H 1.09001 * 109.47169 * 299.99668 * 12 11 9 31 31 H 1.08993 * 109.47339 * 59.99692 * 12 11 9 32 32 H 0.96997 * 120.00153 * 0.02562 * 15 13 12 33 33 H 0.97000 * 119.99798 * 180.02562 * 19 18 16 34 34 H 1.08003 * 119.94957 * 179.97438 * 24 6 5 35 35 H 1.07996 * 120.04713 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3010 -0.0016 -0.0402 11 8 9.6567 0.3568 2.1111 12 6 11.0842 0.3149 1.8493 13 6 11.8377 0.5284 3.1368 14 8 11.2311 0.6996 4.1732 15 7 13.1854 0.5291 3.1368 16 6 13.8708 0.7239 4.3081 17 1 13.3307 0.8772 5.2307 18 6 15.2603 0.7252 4.3080 19 7 15.9174 0.5392 3.1853 20 14 16.1941 0.9899 5.9040 21 1 15.8363 -0.0797 6.8701 22 1 17.6541 0.9464 5.6363 23 1 15.8342 2.3128 6.4746 24 6 4.6461 -0.1962 -1.1882 25 6 3.2688 -0.1974 -1.1928 26 1 2.7309 0.3627 2.1152 27 1 5.1882 0.3535 2.1096 28 1 7.0512 1.1823 1.6594 29 1 7.0531 -0.5736 1.9513 30 1 11.3485 -0.6564 1.4310 31 1 11.3467 1.0996 1.1398 32 1 13.6705 0.3926 2.3080 33 1 16.8874 0.5397 3.1854 34 1 5.1885 -0.3488 -2.1096 35 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:07 Heat of formation + Delta-G solvation = -95.339064 kcal Electronic energy + Delta-G solvation = -22177.075936 eV Core-core repulsion = 18334.467522 eV Total energy + Delta-G solvation = -3842.608413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.04276 -40.23527 -38.52251 -38.06607 -36.54927 -36.16780 -34.07190 -31.89981 -31.46272 -31.17805 -29.69696 -27.90803 -24.72348 -23.88273 -23.48141 -21.19804 -19.68433 -19.42377 -18.81965 -18.13051 -17.67938 -17.17137 -16.83915 -16.03185 -15.88477 -15.51799 -15.09178 -14.61824 -14.45982 -14.42951 -14.10479 -14.04485 -14.04016 -13.64524 -13.06215 -12.90463 -12.82949 -12.56967 -12.34095 -12.10034 -11.66975 -11.50930 -11.47140 -11.15940 -10.57598 -10.56792 -10.53128 -10.33987 -9.67706 -9.65430 -8.79383 -8.61032 -8.14570 -6.55359 -3.97859 0.33146 0.74823 1.79799 2.04037 2.29333 2.50030 3.11378 3.11650 3.19902 3.24937 3.38795 3.50364 3.66209 4.02583 4.14385 4.27811 4.40486 4.53729 4.60639 4.65377 4.86281 4.92922 5.00057 5.09065 5.38883 5.40980 5.47119 5.59119 5.67377 5.78311 5.95513 6.00654 6.40359 6.70324 7.11319 7.42361 7.62650 7.87791 8.41493 9.00999 9.32449 9.81749 10.61513 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.049376 B = 0.001926 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.935754 B =14533.946566 C =15080.435496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.260 3.740 3 C -0.074 4.074 4 C -0.025 4.025 5 C -0.213 4.213 6 C 0.166 3.834 7 O -0.288 6.288 8 C 0.067 3.933 9 C 0.460 3.540 10 O -0.490 6.490 11 O -0.321 6.321 12 C 0.063 3.937 13 C 0.436 3.564 14 O -0.577 6.577 15 N -0.550 5.550 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.896 5.896 20 Si 0.936 3.064 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.148 4.148 25 C -0.028 4.028 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.395 0.605 33 H 0.275 0.725 34 H 0.146 0.854 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.181 -1.335 -8.040 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.055 4.055 3 C -0.078 4.078 4 C -0.045 4.045 5 C -0.231 4.231 6 C 0.118 3.882 7 O -0.199 6.199 8 C -0.009 4.009 9 C 0.301 3.699 10 O -0.377 6.377 11 O -0.236 6.236 12 C -0.014 4.014 13 C 0.221 3.779 14 O -0.461 6.461 15 N -0.187 5.187 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.176 4.176 19 N -0.536 5.536 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.167 4.167 25 C -0.049 4.049 26 H 0.156 0.844 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.229 0.771 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.793 -1.307 -7.859 22.267 hybrid contribution 1.409 0.051 0.291 1.439 sum -19.385 -1.256 -7.568 20.847 Atomic orbital electron populations 1.81275 1.12108 1.09477 1.07215 1.25641 0.92550 0.93470 0.93869 1.15935 0.84448 1.12008 0.95386 1.20974 0.93305 0.93352 0.96880 1.21302 0.94974 1.08846 0.98017 1.19301 0.81763 0.92716 0.94371 1.86082 1.16387 1.86037 1.31445 1.21977 0.87641 1.05618 0.85667 1.22770 0.89532 0.74316 0.83273 1.90720 1.77489 1.43471 1.25987 1.86481 1.18922 1.81758 1.36396 1.22831 0.75896 1.03722 0.98954 1.19257 0.83353 0.86397 0.88896 1.90566 1.67711 1.54871 1.32994 1.41689 1.03460 1.62093 1.11426 1.19683 0.88798 1.46850 0.88065 0.87602 1.25322 0.96645 0.96784 0.98898 1.69604 1.09056 1.48628 1.26282 0.85843 0.77837 0.79257 0.80870 1.19732 1.20840 1.19729 1.20389 0.93094 1.06009 0.97201 1.20976 0.92937 0.94064 0.96913 0.84425 0.83797 0.86879 0.86882 0.89227 0.89221 0.77102 0.91498 0.83666 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.61 18.54 41.83 0.78 -3.84 16 2 C 0.26 2.14 15.33 -22.47 -0.34 1.80 16 3 C -0.07 -0.46 5.74 -106.84 -0.61 -1.07 16 4 C -0.02 -0.13 9.75 -39.20 -0.38 -0.51 16 5 C -0.21 -1.22 9.01 -39.49 -0.36 -1.58 16 6 C 0.17 1.23 6.69 -39.04 -0.26 0.97 16 7 O -0.29 -2.80 9.66 -38.92 -0.38 -3.17 16 8 C 0.07 0.59 5.33 36.00 0.19 0.78 16 9 C 0.46 6.29 8.03 36.00 0.29 6.58 16 10 O -0.49 -8.02 16.25 -25.48 -0.41 -8.43 16 11 O -0.32 -5.27 9.75 -45.89 -0.45 -5.71 16 12 C 0.06 1.11 5.94 36.00 0.21 1.32 16 13 C 0.44 9.96 7.86 -10.99 -0.09 9.88 16 14 O -0.58 -15.26 16.08 -14.12 -0.23 -15.48 16 15 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 16 C -0.30 -8.14 9.68 -14.94 -0.14 -8.29 16 17 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.35 13.05 55.50 0.72 -22.62 16 20 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.15 -0.93 9.97 -39.50 -0.39 -1.33 16 25 C -0.03 -0.15 9.75 -39.20 -0.38 -0.53 16 26 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 27 H 0.14 0.57 6.28 -52.48 -0.33 0.24 16 28 H 0.11 0.71 7.65 -51.93 -0.40 0.31 16 29 H 0.11 0.71 7.65 -51.93 -0.40 0.31 16 30 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 31 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 32 H 0.40 9.07 7.90 -40.82 -0.32 8.75 16 33 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -33.73 333.45 -5.46 -39.19 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.07 Total: 4.75 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -2.36 Total: 8.59 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 1.44 Total: -39.85 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.46 Total: -32.81 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.73 -5.46 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.151 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds