Wall clock time and date at job start Fri Apr 10 2020 14:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.20827 * 119.99929 * 359.97438 * 9 8 7 11 11 O 1.34226 * 120.00338 * 180.02562 * 9 8 7 12 12 C 1.45198 * 117.00202 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47411 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99884 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00293 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00307 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99776 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00442 * 180.02562 * 16 15 13 19 19 N 1.31414 * 119.99837 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00228 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46864 * 59.99680 * 20 18 16 22 22 H 1.48496 * 109.47156 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47092 * 299.99959 * 20 18 16 24 24 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 25 25 C 1.37732 * 120.09997 * 0.02562 * 24 6 5 26 26 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 28 28 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 29 29 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 30 30 H 1.09001 * 109.47169 * 299.99668 * 12 11 9 31 31 H 1.08993 * 109.47339 * 59.99692 * 12 11 9 32 32 H 0.96997 * 120.00153 * 0.02562 * 15 13 12 33 33 H 0.97000 * 119.99798 * 180.02562 * 19 18 16 34 34 H 1.08003 * 119.94957 * 179.97438 * 24 6 5 35 35 H 1.07996 * 120.04713 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3010 -0.0016 -0.0402 11 8 9.6567 0.3568 2.1111 12 6 11.0842 0.3149 1.8493 13 6 11.8377 0.5284 3.1368 14 8 11.2311 0.6996 4.1732 15 7 13.1854 0.5291 3.1368 16 6 13.8708 0.7239 4.3081 17 1 13.3307 0.8772 5.2307 18 6 15.2603 0.7252 4.3080 19 7 15.9174 0.5392 3.1853 20 14 16.1941 0.9899 5.9040 21 1 15.8363 -0.0797 6.8701 22 1 17.6541 0.9464 5.6363 23 1 15.8342 2.3128 6.4746 24 6 4.6461 -0.1962 -1.1882 25 6 3.2688 -0.1974 -1.1928 26 1 2.7309 0.3627 2.1152 27 1 5.1882 0.3535 2.1096 28 1 7.0512 1.1823 1.6594 29 1 7.0531 -0.5736 1.9513 30 1 11.3485 -0.6564 1.4310 31 1 11.3467 1.0996 1.1398 32 1 13.6705 0.3926 2.3080 33 1 16.8874 0.5397 3.1854 34 1 5.1885 -0.3488 -2.1096 35 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:05 Heat of formation + Delta-G solvation = -116.205553 kcal Electronic energy + Delta-G solvation = -22177.980774 eV Core-core repulsion = 18334.467522 eV Total energy + Delta-G solvation = -3843.513252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.90941 -41.10706 -40.01495 -38.97787 -37.55049 -37.11213 -36.01747 -33.40751 -32.37915 -31.75226 -30.71261 -29.13424 -26.53279 -24.44845 -24.05429 -22.21044 -21.42419 -20.07202 -19.93098 -19.48761 -18.71397 -18.14878 -17.94596 -17.40854 -16.84020 -16.74692 -16.25538 -15.75650 -15.61055 -15.54593 -15.06196 -14.97853 -14.71605 -14.50411 -14.17836 -14.04394 -13.71025 -13.53784 -13.39854 -13.32011 -13.10658 -12.91755 -12.46990 -12.12074 -12.09514 -11.99307 -11.90205 -11.59485 -11.55304 -10.50404 -10.10437 -10.08804 -9.32298 -8.50850 -6.01495 -0.17601 0.33798 0.87160 0.99070 1.39296 1.45187 1.55932 1.65507 1.88727 1.92785 2.22148 2.40338 2.88248 2.92568 3.02616 3.14996 3.50053 3.75897 3.91819 3.99715 4.02970 4.08560 4.17610 4.18114 4.23521 4.44858 4.57878 4.99903 5.02846 5.21290 5.23347 5.34761 5.38538 5.56028 5.90171 6.16982 6.45600 6.49440 6.57361 7.04251 7.41438 7.94364 8.65659 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.049376 B = 0.001926 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.935754 B =14533.946566 C =15080.435496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.285 3.715 3 C -0.083 4.083 4 C -0.020 4.020 5 C -0.210 4.210 6 C 0.152 3.848 7 O -0.311 6.311 8 C 0.072 3.928 9 C 0.461 3.539 10 O -0.521 6.521 11 O -0.335 6.335 12 C 0.073 3.927 13 C 0.437 3.563 14 O -0.616 6.616 15 N -0.558 5.558 16 C -0.339 4.339 17 H 0.086 0.914 18 C -0.008 4.008 19 N -0.915 5.915 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.270 1.270 24 C -0.156 4.156 25 C -0.020 4.020 26 H 0.156 0.844 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.400 0.600 33 H 0.280 0.720 34 H 0.150 0.850 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.535 -1.304 -7.864 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.029 4.029 3 C -0.086 4.086 4 C -0.040 4.040 5 C -0.228 4.228 6 C 0.105 3.895 7 O -0.224 6.224 8 C -0.003 4.003 9 C 0.304 3.696 10 O -0.409 6.409 11 O -0.250 6.250 12 C -0.004 4.004 13 C 0.223 3.777 14 O -0.503 6.503 15 N -0.195 5.195 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.209 4.209 19 N -0.555 5.555 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.174 4.174 25 C -0.041 4.041 26 H 0.174 0.826 27 H 0.182 0.818 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.159 -1.280 -7.713 22.557 hybrid contribution 1.467 0.030 0.174 1.477 sum -19.692 -1.250 -7.539 21.123 Atomic orbital electron populations 1.81301 1.13584 1.11468 1.08860 1.25866 0.92697 0.91974 0.92371 1.16040 0.83344 1.12987 0.96277 1.21190 0.93312 0.92290 0.97245 1.21494 0.95032 1.08089 0.98190 1.19514 0.80914 0.93624 0.95401 1.86033 1.17652 1.86670 1.31996 1.22172 0.83842 1.08339 0.85995 1.23707 0.91076 0.72717 0.82075 1.90706 1.78249 1.45004 1.26959 1.86478 1.18262 1.82307 1.37986 1.22548 0.76739 1.05369 0.95706 1.20076 0.82994 0.84342 0.90260 1.90530 1.68447 1.56196 1.35155 1.41736 1.04211 1.62512 1.11033 1.19696 0.89673 1.49007 0.88419 0.89594 1.26109 0.96860 0.95839 1.02086 1.69665 1.09542 1.48498 1.27750 0.84919 0.76901 0.79069 0.77059 1.19501 1.19587 1.19488 1.20530 0.93407 1.06156 0.97345 1.21134 0.92596 0.92942 0.97401 0.82610 0.81751 0.83914 0.83927 0.87376 0.87361 0.76558 0.91003 0.83234 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.11 18.54 19.00 0.35 -9.76 16 2 C 0.28 4.37 15.33 88.33 1.35 5.72 16 3 C -0.08 -0.87 5.74 -21.30 -0.12 -0.99 16 4 C -0.02 -0.16 9.75 22.52 0.22 0.06 16 5 C -0.21 -1.78 9.01 22.33 0.20 -1.58 16 6 C 0.15 1.92 6.69 22.62 0.15 2.07 16 7 O -0.31 -5.42 9.66 -71.72 -0.69 -6.11 16 8 C 0.07 1.06 5.33 71.23 0.38 1.44 16 9 C 0.46 11.85 8.03 71.23 0.57 12.43 16 10 O -0.52 -16.49 16.25 28.39 0.46 -16.03 16 11 O -0.33 -10.57 9.75 -45.02 -0.44 -11.01 16 12 C 0.07 2.51 5.94 71.24 0.42 2.94 16 13 C 0.44 20.04 7.86 87.66 0.69 20.73 16 14 O -0.62 -33.02 16.08 15.72 0.25 -32.77 16 15 N -0.56 -27.36 5.29 -306.99 -1.62 -28.99 16 16 C -0.34 -18.38 9.68 84.04 0.81 -17.56 16 17 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.01 -0.41 5.50 84.92 0.47 0.06 16 19 N -0.91 -47.33 13.05 21.66 0.28 -47.05 16 20 Si 1.00 40.81 29.55 68.60 2.03 42.83 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 C -0.16 -1.69 9.97 22.32 0.22 -1.47 16 25 C -0.02 -0.18 9.75 22.52 0.22 0.04 16 26 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 27 H 0.17 0.66 6.28 -2.91 -0.02 0.64 16 28 H 0.14 1.29 7.65 -2.38 -0.02 1.27 16 29 H 0.14 1.29 7.65 -2.38 -0.02 1.27 16 30 H 0.11 3.31 8.13 -2.39 -0.02 3.29 16 31 H 0.11 3.31 8.13 -2.39 -0.02 3.29 16 32 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 33 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 34 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -73.75 333.45 6.65 -67.10 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.43 Total: 17.89 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 5.59 Total: 23.89 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -0.99 Total: -85.79 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -0.42 Total: -65.92 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -73.75 6.65 -67.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.104 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds