Wall clock time and date at job start Fri Apr 10 2020 14:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39670 * 120.11995 * 284.37778 * 3 2 1 5 5 C 1.37953 * 119.95360 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.21574 * 0.04683 * 5 4 3 7 7 C 1.38816 * 120.25137 * 359.97438 * 6 5 4 8 8 O 1.35912 * 119.98397 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99733 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.46784 * 180.02562 * 9 8 7 11 11 O 1.20823 * 120.00200 * 0.02562 * 10 9 8 12 12 O 1.34227 * 119.99646 * 179.97438 * 10 9 8 13 13 C 1.45205 * 117.00048 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47493 * 180.02562 * 13 12 10 15 15 O 1.21294 * 120.00088 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00158 * 179.97438 * 14 13 12 17 17 C 1.37104 * 120.00177 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99549 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99942 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00125 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99519 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47594 * 59.99746 * 21 19 17 23 23 H 1.48507 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47373 * 299.99388 * 21 19 17 25 25 C 1.38485 * 120.03682 * 0.02562 * 7 6 5 26 26 H 1.07996 * 120.02104 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.89064 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.87444 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.46737 * 299.99527 * 9 8 7 30 30 H 1.08992 * 109.47269 * 60.00356 * 9 8 7 31 31 H 1.09000 * 109.46958 * 300.00538 * 13 12 10 32 32 H 1.08995 * 109.46828 * 60.00044 * 13 12 10 33 33 H 0.97004 * 120.00093 * 0.02562 * 16 14 13 34 34 H 0.96998 * 119.99880 * 180.02562 * 20 19 17 35 35 H 1.08005 * 120.10676 * 179.72856 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.2990 1.1703 5 6 4.6486 -0.2979 1.1663 6 6 5.3409 0.0000 0.0068 7 6 4.6530 0.2996 -1.1611 8 8 5.3389 0.5921 -2.2974 9 6 6.7655 0.5722 -2.2172 10 6 7.3491 0.9191 -3.5626 11 8 6.6183 1.1594 -4.4943 12 8 8.6807 0.9623 -3.7256 13 6 9.1722 1.3029 -5.0488 14 6 10.6791 1.3016 -5.0407 15 8 11.2799 1.0390 -4.0203 16 7 11.3593 1.5912 -6.1676 17 6 12.7304 1.5906 -6.1601 18 1 13.2653 1.3575 -5.2512 19 6 13.4316 1.8897 -7.3218 20 7 12.7807 2.1728 -8.4277 21 14 15.2996 1.8881 -7.3116 22 1 15.7914 0.5391 -6.9329 23 1 15.8022 2.2358 -8.6651 24 1 15.7901 2.8876 -6.3291 25 6 3.2682 0.3015 -1.1688 26 1 2.7315 -0.5323 2.0774 27 1 5.1896 -0.5302 2.0717 28 1 6.4209 -0.0011 0.0098 29 1 7.0981 1.3013 -1.4784 30 1 7.0990 -0.4226 -1.9218 31 1 8.8124 0.5690 -5.7700 32 1 8.8109 2.2929 -5.3269 33 1 10.8789 1.8009 -6.9838 34 1 13.2703 2.3812 -9.2387 35 1 2.7318 0.5387 -2.0758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:32 Heat of formation + Delta-G solvation = -93.846944 kcal Electronic energy + Delta-G solvation = -22219.945928 eV Core-core repulsion = 18377.402218 eV Total energy + Delta-G solvation = -3842.543710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00481 -40.22233 -38.49015 -38.03901 -36.63256 -36.16524 -34.06501 -31.96621 -31.46176 -31.12838 -29.53046 -27.84806 -24.80432 -24.33246 -23.04973 -21.38018 -19.81676 -19.63234 -18.14528 -18.02175 -17.13901 -17.08857 -16.84381 -16.43849 -15.98673 -15.85829 -15.37519 -14.63463 -14.50865 -14.46547 -14.08494 -14.01619 -13.82047 -13.50420 -13.08293 -12.88900 -12.85162 -12.34036 -12.32870 -12.09289 -11.66583 -11.60077 -11.54807 -11.15513 -10.56121 -10.54499 -10.52706 -10.33459 -9.64891 -9.56838 -8.83314 -8.60313 -8.14038 -6.54819 -3.97333 0.21558 0.82792 1.78337 2.06441 2.25404 2.47663 3.08468 3.11726 3.20118 3.24582 3.36503 3.52100 3.66887 4.03833 4.17249 4.39974 4.45446 4.54336 4.62042 4.63523 4.78117 4.91007 4.96191 5.09660 5.31389 5.42548 5.59017 5.60231 5.74403 5.78767 5.95771 5.98639 6.42086 6.74598 7.02658 7.42818 7.64901 7.88441 8.42089 9.01486 9.33071 9.82362 10.62092 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.050025 B = 0.001960 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.586835 B =14280.093303 C =14819.234679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.256 3.744 3 C 0.010 3.990 4 C -0.108 4.108 5 C -0.077 4.077 6 C -0.180 4.180 7 C 0.134 3.866 8 O -0.290 6.290 9 C 0.069 3.931 10 C 0.460 3.540 11 O -0.490 6.490 12 O -0.321 6.321 13 C 0.063 3.937 14 C 0.437 3.563 15 O -0.577 6.577 16 N -0.550 5.550 17 C -0.305 4.305 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.896 5.896 21 Si 0.936 3.064 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.100 4.100 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.275 0.725 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.925 -4.017 15.599 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.059 4.059 3 C 0.007 3.993 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.199 4.199 7 C 0.088 3.912 8 O -0.203 6.203 9 C -0.007 4.007 10 C 0.301 3.699 11 O -0.376 6.376 12 O -0.236 6.236 13 C -0.014 4.014 14 C 0.221 3.779 15 O -0.461 6.461 16 N -0.187 5.187 17 C -0.434 4.434 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.536 5.536 21 Si 0.762 3.238 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.121 4.121 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.469 -4.009 15.565 23.013 hybrid contribution 1.167 0.179 -0.692 1.369 sum -15.302 -3.830 14.873 21.680 Atomic orbital electron populations 1.81280 1.11970 1.08210 1.07133 1.25562 0.92488 0.93954 0.93918 1.15616 0.84284 1.04721 0.94719 1.21115 0.94370 1.00501 0.96893 1.20916 0.93398 0.97156 0.98012 1.21633 1.01358 1.04194 0.92742 1.18679 0.91190 0.95953 0.85334 1.86104 1.17989 1.84781 1.31457 1.21929 0.79426 1.05215 0.94117 1.22786 0.81852 0.75128 0.90147 1.90719 1.60969 1.43819 1.42139 1.86481 1.21539 1.79938 1.35632 1.22829 0.95394 1.02331 0.80868 1.19256 0.86771 0.86255 0.85586 1.90563 1.69413 1.53941 1.32230 1.41695 1.07285 1.59988 1.09730 1.19684 0.80480 1.45172 0.98039 0.87598 1.25325 1.01079 0.96603 0.94674 1.69604 1.37010 1.46090 1.00881 0.85842 0.81528 0.79083 0.77342 1.19732 1.20847 1.19727 1.20349 0.91083 1.02284 0.98367 0.84696 0.84257 0.84088 0.87034 0.87030 0.89236 0.89231 0.77100 0.91497 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.56 18.54 41.84 0.78 -3.79 16 2 C 0.26 2.22 15.33 -22.47 -0.34 1.88 16 3 C 0.01 0.07 5.73 -106.95 -0.61 -0.54 16 4 C -0.11 -0.54 9.75 -39.15 -0.38 -0.92 16 5 C -0.08 -0.33 10.02 -39.67 -0.40 -0.73 16 6 C -0.18 -1.01 9.03 -39.35 -0.36 -1.36 16 7 C 0.13 1.05 6.68 -39.28 -0.26 0.79 16 8 O -0.29 -2.97 9.67 -39.42 -0.38 -3.35 16 9 C 0.07 0.62 5.33 36.01 0.19 0.82 16 10 C 0.46 6.42 8.03 36.01 0.29 6.71 16 11 O -0.49 -8.21 16.25 -25.47 -0.41 -8.62 16 12 O -0.32 -5.33 9.76 -45.89 -0.45 -5.78 16 13 C 0.06 1.12 5.94 36.00 0.21 1.33 16 14 C 0.44 10.02 7.86 -10.99 -0.09 9.93 16 15 O -0.58 -15.29 16.08 -14.11 -0.23 -15.52 16 16 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 17 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 18 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -23.46 13.05 55.50 0.72 -22.73 16 21 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 C -0.10 -0.75 9.69 -39.01 -0.38 -1.13 16 26 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 27 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 28 H 0.14 0.54 6.28 -52.49 -0.33 0.21 16 29 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 30 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 31 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 32 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 33 H 0.40 9.13 7.90 -40.82 -0.32 8.81 16 34 H 0.28 6.82 8.31 -40.82 -0.34 6.49 16 35 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -33.76 333.48 -5.46 -39.22 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.07 Total: 4.81 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.36 Total: 9.04 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 1.44 Total: -39.98 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.47 Total: -33.27 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.76 -5.46 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.627 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds