Wall clock time and date at job start Fri Apr 10 2020 14:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39670 * 120.11995 * 284.37778 * 3 2 1 5 5 C 1.37953 * 119.95360 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.21574 * 0.04683 * 5 4 3 7 7 C 1.38816 * 120.25137 * 359.97438 * 6 5 4 8 8 O 1.35912 * 119.98397 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99733 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.46784 * 180.02562 * 9 8 7 11 11 O 1.20823 * 120.00200 * 0.02562 * 10 9 8 12 12 O 1.34227 * 119.99646 * 179.97438 * 10 9 8 13 13 C 1.45205 * 117.00048 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47493 * 180.02562 * 13 12 10 15 15 O 1.21294 * 120.00088 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00158 * 179.97438 * 14 13 12 17 17 C 1.37104 * 120.00177 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99549 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99942 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00125 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99519 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47594 * 59.99746 * 21 19 17 23 23 H 1.48507 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47373 * 299.99388 * 21 19 17 25 25 C 1.38485 * 120.03682 * 0.02562 * 7 6 5 26 26 H 1.07996 * 120.02104 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.89064 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.87444 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.46737 * 299.99527 * 9 8 7 30 30 H 1.08992 * 109.47269 * 60.00356 * 9 8 7 31 31 H 1.09000 * 109.46958 * 300.00538 * 13 12 10 32 32 H 1.08995 * 109.46828 * 60.00044 * 13 12 10 33 33 H 0.97004 * 120.00093 * 0.02562 * 16 14 13 34 34 H 0.96998 * 119.99880 * 180.02562 * 20 19 17 35 35 H 1.08005 * 120.10676 * 179.72856 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.2990 1.1703 5 6 4.6486 -0.2979 1.1663 6 6 5.3409 0.0000 0.0068 7 6 4.6530 0.2996 -1.1611 8 8 5.3389 0.5921 -2.2974 9 6 6.7655 0.5722 -2.2172 10 6 7.3491 0.9191 -3.5626 11 8 6.6183 1.1594 -4.4943 12 8 8.6807 0.9623 -3.7256 13 6 9.1722 1.3029 -5.0488 14 6 10.6791 1.3016 -5.0407 15 8 11.2799 1.0390 -4.0203 16 7 11.3593 1.5912 -6.1676 17 6 12.7304 1.5906 -6.1601 18 1 13.2653 1.3575 -5.2512 19 6 13.4316 1.8897 -7.3218 20 7 12.7807 2.1728 -8.4277 21 14 15.2996 1.8881 -7.3116 22 1 15.7914 0.5391 -6.9329 23 1 15.8022 2.2358 -8.6651 24 1 15.7901 2.8876 -6.3291 25 6 3.2682 0.3015 -1.1688 26 1 2.7315 -0.5323 2.0774 27 1 5.1896 -0.5302 2.0717 28 1 6.4209 -0.0011 0.0098 29 1 7.0981 1.3013 -1.4784 30 1 7.0990 -0.4226 -1.9218 31 1 8.8124 0.5690 -5.7700 32 1 8.8109 2.2929 -5.3269 33 1 10.8789 1.8009 -6.9838 34 1 13.2703 2.3812 -9.2387 35 1 2.7318 0.5387 -2.0758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:32 Heat of formation + Delta-G solvation = -114.950048 kcal Electronic energy + Delta-G solvation = -22220.861027 eV Core-core repulsion = 18377.402218 eV Total energy + Delta-G solvation = -3843.458809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89831 -41.09696 -40.01996 -38.95015 -37.56817 -37.20923 -36.01875 -33.41004 -32.44564 -31.77873 -30.55637 -29.03458 -26.53611 -25.02612 -23.53292 -22.45336 -21.42725 -20.37616 -20.05372 -19.08154 -18.14430 -18.10718 -17.59447 -17.34839 -16.99961 -16.82566 -16.70636 -16.17942 -15.72689 -15.62196 -15.03678 -15.02921 -14.71077 -14.38767 -14.11165 -14.04057 -13.75257 -13.54215 -13.44124 -13.32187 -12.91690 -12.72308 -12.47163 -12.15315 -12.11984 -12.11651 -11.90861 -11.60961 -11.55350 -10.50660 -10.10789 -10.03396 -9.33427 -8.51021 -6.01764 -0.27894 0.38223 0.86078 0.99003 1.39248 1.44947 1.53698 1.56663 1.88396 1.89127 2.22009 2.38556 2.85522 2.87504 3.04474 3.14777 3.51004 3.78746 3.98627 4.04345 4.04856 4.12301 4.16956 4.17698 4.22805 4.32225 4.50681 4.86634 5.15947 5.21605 5.32588 5.38302 5.38719 5.57261 5.89927 6.20426 6.36988 6.45470 6.57453 7.03875 7.41079 7.93799 8.65551 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.050025 B = 0.001960 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.586835 B =14280.093303 C =14819.234679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.280 3.720 3 C -0.002 4.002 4 C -0.096 4.096 5 C -0.070 4.070 6 C -0.171 4.171 7 C 0.114 3.886 8 O -0.318 6.318 9 C 0.074 3.926 10 C 0.461 3.539 11 O -0.523 6.523 12 O -0.334 6.334 13 C 0.073 3.927 14 C 0.437 3.563 15 O -0.616 6.616 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.111 4.111 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.400 0.600 34 H 0.280 0.720 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 -4.445 17.263 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.035 4.035 3 C -0.006 4.006 4 C -0.117 4.117 5 C -0.088 4.088 6 C -0.190 4.190 7 C 0.070 3.930 8 O -0.232 6.232 9 C -0.001 4.001 10 C 0.304 3.696 11 O -0.411 6.411 12 O -0.249 6.249 13 C -0.004 4.004 14 C 0.224 3.776 15 O -0.502 6.502 16 N -0.195 5.195 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.210 4.210 20 N -0.555 5.555 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.132 4.132 26 H 0.174 0.826 27 H 0.190 0.810 28 H 0.182 0.818 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.752 -4.436 17.228 23.762 hybrid contribution 0.891 0.293 -1.138 1.474 sum -14.861 -4.143 16.090 22.292 Atomic orbital electron populations 1.81293 1.13398 1.10253 1.08771 1.25845 0.92737 0.92449 0.92441 1.15644 0.83138 1.06326 0.95453 1.21439 0.94962 0.98601 0.96692 1.21306 0.93049 0.95713 0.98739 1.21948 1.02556 1.02497 0.92004 1.18780 0.91054 0.97609 0.85586 1.86042 1.18468 1.85617 1.33072 1.22135 0.79102 1.07722 0.91104 1.23763 0.80443 0.73680 0.91748 1.90706 1.61219 1.45465 1.43745 1.86479 1.23460 1.80332 1.34663 1.22548 0.91479 1.04039 0.82356 1.20051 0.88955 0.84200 0.84402 1.90527 1.71032 1.55213 1.33456 1.41747 1.06885 1.60448 1.10458 1.19705 0.81815 1.47205 0.98013 0.89520 1.26128 1.05346 0.95555 0.93962 1.69668 1.38617 1.45976 1.01281 0.84908 0.76142 0.79070 0.77761 1.19445 1.19637 1.19432 1.20340 0.91485 1.02974 0.98441 0.82597 0.80965 0.81830 0.83923 0.83916 0.87456 0.87449 0.76589 0.91010 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.46 18.54 19.01 0.35 -10.11 16 2 C 0.28 4.81 15.33 88.33 1.35 6.16 16 3 C 0.00 -0.03 5.73 -21.37 -0.12 -0.15 16 4 C -0.10 -0.67 9.75 22.55 0.22 -0.45 16 5 C -0.07 -0.32 10.02 22.21 0.22 -0.10 16 6 C -0.17 -1.30 9.03 22.42 0.20 -1.09 16 7 C 0.11 1.60 6.68 22.47 0.15 1.75 16 8 O -0.32 -6.05 9.67 -73.48 -0.71 -6.76 16 9 C 0.07 1.15 5.33 71.24 0.38 1.53 16 10 C 0.46 12.22 8.03 71.24 0.57 12.80 16 11 O -0.52 -17.23 16.25 28.41 0.46 -16.77 16 12 O -0.33 -10.70 9.76 -45.03 -0.44 -11.13 16 13 C 0.07 2.53 5.94 71.23 0.42 2.96 16 14 C 0.44 20.19 7.86 87.66 0.69 20.88 16 15 O -0.62 -33.01 16.08 15.72 0.25 -32.75 16 16 N -0.56 -27.55 5.29 -306.98 -1.62 -29.18 16 17 C -0.34 -18.40 9.68 84.04 0.81 -17.58 16 18 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 19 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 20 N -0.92 -47.66 13.05 21.66 0.28 -47.38 16 21 Si 1.00 40.90 29.55 68.60 2.03 42.93 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 C -0.11 -1.62 9.69 22.64 0.22 -1.40 16 26 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 27 H 0.17 -0.28 8.06 -2.91 -0.02 -0.30 16 28 H 0.16 0.46 6.28 -2.91 -0.02 0.44 16 29 H 0.14 1.32 7.66 -2.39 -0.02 1.30 16 30 H 0.14 1.32 7.66 -2.39 -0.02 1.30 16 31 H 0.11 3.36 8.13 -2.39 -0.02 3.34 16 32 H 0.11 3.36 8.13 -2.39 -0.02 3.34 16 33 H 0.40 18.67 7.90 -92.70 -0.73 17.94 16 34 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -74.96 333.48 6.63 -68.33 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.43 Total: 17.53 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 5.59 Total: 25.30 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -0.99 Total: -86.66 kcal Atomic # 8 Polarization: -66.99 SS G_CDS: -0.44 Total: -67.43 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -74.96 6.63 -68.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.617 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds