Wall clock time and date at job start Fri Apr 10 2020 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86803 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47126 * 240.00098 * 3 2 1 5 5 H 1.48493 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46588 * 120.00367 * 3 2 1 7 7 C 1.38816 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99603 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.34922 * 116.99707 * 180.02562 * 9 7 2 11 11 O 1.21686 * 120.00103 * 359.97438 * 10 9 7 12 12 C 1.41727 * 119.99794 * 180.02562 * 10 9 7 13 13 N 1.29572 * 125.29144 * 0.25592 * 12 10 9 14 14 N 1.39344 * 113.96251 * 180.19719 * 13 12 10 15 15 C 1.39566 * 125.53068 * 179.84141 * 14 13 12 16 16 C 1.38976 * 120.08496 * 359.69425 * 15 14 13 17 17 C 1.38084 * 119.92114 * 179.97438 * 16 15 14 18 18 C 1.38296 * 120.07872 * 0.26137 * 17 16 15 19 19 C 1.38306 * 120.16599 * 359.48371 * 18 17 16 20 20 C 1.38084 * 120.07715 * 0.51009 * 19 18 17 21 21 C 1.47123 * 108.93172 * 359.58028 * 14 13 12 22 22 H 1.09001 * 110.58284 * 118.77818 * 21 14 13 23 23 C 1.50702 * 110.58069 * 241.52449 * 21 14 13 24 24 O 1.20833 * 119.99605 * 18.54881 * 23 21 14 25 25 O 1.34229 * 120.00024 * 198.54504 * 23 21 14 26 26 C 1.51202 * 125.28611 * 180.02562 * 12 10 9 27 27 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03872 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.95739 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.91848 * 179.72270 * 18 17 16 31 31 H 1.07997 * 119.96390 * 180.26104 * 19 18 17 32 32 H 1.07999 * 120.04246 * 179.76904 * 20 19 18 33 33 H 0.96700 * 116.99287 * 180.02562 * 25 23 21 34 34 H 1.08992 * 110.52978 * 61.34834 * 26 12 10 35 35 H 1.09006 * 110.63964 * 298.65533 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0083 -1.2022 -0.0005 8 1 3.0883 -1.2021 -0.0001 9 8 1.3342 -2.3698 -0.0005 10 6 2.0691 -3.5013 -0.0005 11 8 3.2843 -3.4376 -0.0010 12 6 1.4256 -4.7641 -0.0011 13 7 0.1435 -4.9509 -0.0063 14 7 -0.2329 -6.2926 -0.0012 15 6 -1.5456 -6.7667 -0.0020 16 6 -2.6093 -5.8723 -0.0018 17 6 -3.9067 -6.3451 -0.0031 18 6 -4.1482 -7.7068 0.0009 19 6 -3.0922 -8.6000 -0.0045 20 6 -1.7922 -8.1345 -0.0033 21 6 0.9780 -7.1281 -0.0012 22 1 1.0164 -7.7472 0.8951 23 6 1.0293 -7.9866 -1.2387 24 8 0.3561 -7.7007 -2.2006 25 8 1.8229 -9.0686 -1.2725 26 6 2.1288 -6.1026 -0.0006 27 1 -0.4850 0.8400 0.0004 28 1 -2.4215 -4.8088 -0.0016 29 1 -4.7338 -5.6506 -0.0026 30 1 -5.1639 -8.0737 0.0044 31 1 -3.2845 -9.6626 -0.0056 32 1 -0.9680 -8.8324 -0.0038 33 1 1.8224 -9.5880 -2.0882 34 1 2.7392 -6.2135 0.8956 35 1 2.7413 -6.2153 -0.8953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740305929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:23 Heat of formation + Delta-G solvation = -68.262124 kcal Electronic energy + Delta-G solvation = -24204.254180 eV Core-core repulsion = 20362.819911 eV Total energy + Delta-G solvation = -3841.434269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24218 -39.60879 -39.08081 -38.19192 -36.29691 -35.31417 -33.24024 -32.35557 -31.62002 -30.65263 -28.99303 -26.01768 -25.07660 -23.91116 -22.76971 -21.82364 -20.68451 -19.30546 -18.47043 -17.90482 -17.78760 -17.22165 -16.79840 -16.08398 -15.73860 -15.07730 -14.97729 -14.72386 -14.47357 -14.13772 -14.09059 -13.53509 -13.32701 -13.27374 -12.84017 -12.64587 -12.47577 -11.88835 -11.78436 -11.71351 -11.49282 -11.30434 -11.06355 -10.84207 -10.54803 -10.51336 -10.31461 -10.01049 -9.54847 -9.36699 -8.89901 -8.72756 -7.43591 -6.59321 -4.19343 1.14524 1.46222 1.76743 1.86388 2.25238 2.82131 3.11654 3.11959 3.16270 3.74138 3.81954 3.95496 4.00176 4.14336 4.44272 4.71689 4.89310 4.95723 5.00699 5.02711 5.21193 5.43907 5.46828 5.49986 5.57148 5.68533 5.80519 6.11125 6.20419 6.39166 6.47357 6.64145 6.71696 6.84427 7.21861 7.27891 7.63433 7.73615 7.81022 8.52906 8.86327 9.64811 10.56110 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.004202 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.746819 B = 6661.129241 C = 8103.028124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.043 3.957 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.369 4.369 8 H 0.103 0.897 9 O -0.182 6.182 10 C 0.447 3.553 11 O -0.550 6.550 12 C 0.074 3.926 13 N -0.158 5.158 14 N -0.453 5.453 15 C 0.234 3.766 16 C -0.149 4.149 17 C -0.081 4.081 18 C -0.165 4.165 19 C -0.082 4.082 20 C -0.178 4.178 21 C 0.120 3.880 22 H 0.127 0.873 23 C 0.466 3.534 24 O -0.486 6.486 25 O -0.512 6.512 26 C -0.091 4.091 27 H 0.276 0.724 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.412 0.588 34 H 0.124 0.876 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -16.929 0.849 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.446 4.446 8 H 0.121 0.879 9 O -0.084 6.084 10 C 0.295 3.705 11 O -0.447 6.447 12 C -0.116 4.116 13 N 0.030 4.970 14 N -0.254 5.254 15 C 0.138 3.862 16 C -0.171 4.171 17 C -0.100 4.100 18 C -0.184 4.184 19 C -0.101 4.101 20 C -0.200 4.200 21 C 0.013 3.987 22 H 0.144 0.856 23 C 0.304 3.696 24 O -0.371 6.371 25 O -0.324 6.324 26 C -0.131 4.131 27 H 0.086 0.914 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.271 0.729 34 H 0.142 0.858 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.014 -16.019 0.926 16.541 hybrid contribution 1.111 -0.205 -0.701 1.329 sum -2.904 -16.225 0.225 16.484 Atomic orbital electron populations 1.70006 1.06246 1.28529 1.42639 1.25519 0.95893 0.99272 0.95770 0.85639 0.78687 0.78680 0.79636 1.19153 1.20140 1.19133 1.21435 0.92821 0.79619 1.50704 0.87938 1.84026 1.38962 1.13160 1.72274 1.17688 0.85496 0.83760 0.83521 1.90731 1.13840 1.87217 1.52929 1.22721 0.90149 0.94680 1.04039 1.75419 1.16228 0.97145 1.08257 1.48197 1.02450 0.99867 1.74931 1.17255 0.80388 0.92317 0.96253 1.20926 0.91035 1.00498 1.04611 1.20999 0.96006 0.95536 0.97414 1.20989 0.98773 0.93330 1.05334 1.20761 0.91550 0.99385 0.98401 1.20466 0.97629 0.92302 1.09633 1.21816 0.87906 0.93704 0.95317 0.85584 1.23681 0.76484 0.79524 0.89884 1.90799 1.40413 1.69565 1.36326 1.84515 1.62971 1.38721 1.46217 1.21815 0.96296 0.87873 1.07089 0.91441 0.84297 0.85572 0.86218 0.85981 0.87105 0.72860 0.85759 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.96 13.67 55.49 0.76 -23.20 16 2 C 0.04 1.17 5.50 -17.51 -0.10 1.08 16 3 Si 0.95 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.37 -10.60 9.65 30.95 0.30 -10.30 16 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 9 O -0.18 -5.22 9.66 -22.07 -0.21 -5.43 16 10 C 0.45 11.23 7.68 32.06 0.25 11.47 16 11 O -0.55 -14.31 16.08 -19.41 -0.31 -14.62 16 12 C 0.07 1.53 7.08 -81.97 -0.58 0.95 16 13 N -0.16 -3.29 11.25 33.98 0.38 -2.91 16 14 N -0.45 -7.86 3.52 -52.30 -0.18 -8.04 16 15 C 0.23 3.84 6.27 -83.79 -0.53 3.31 16 16 C -0.15 -2.44 9.64 -39.36 -0.38 -2.82 16 17 C -0.08 -1.07 10.04 -39.62 -0.40 -1.47 16 18 C -0.16 -1.92 10.04 -39.53 -0.40 -2.32 16 19 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 20 C -0.18 -2.42 8.82 -39.36 -0.35 -2.76 16 21 C 0.12 1.65 3.32 -68.15 -0.23 1.43 16 22 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 23 C 0.47 6.16 5.73 36.01 0.21 6.37 16 24 O -0.49 -8.27 16.75 -18.76 -0.31 -8.58 16 25 O -0.51 -4.66 13.42 -39.26 -0.53 -5.19 16 26 C -0.09 -1.36 6.31 -27.04 -0.17 -1.53 16 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.14 2.51 7.66 -52.49 -0.40 2.11 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.11 1.33 6.37 -52.49 -0.33 1.00 16 33 H 0.41 2.02 9.10 45.56 0.41 2.44 16 34 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.11 1.54 7.73 -51.93 -0.40 1.14 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -35.36 321.85 -5.68 -41.05 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.33 Total: 4.66 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.77 Total: 2.04 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.96 Total: -34.15 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.37 Total: -33.82 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.36 -5.68 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740305929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds