Wall clock time and date at job start Fri Apr 10 2020 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86803 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47126 * 240.00098 * 3 2 1 5 5 H 1.48493 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46588 * 120.00367 * 3 2 1 7 7 C 1.38816 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99603 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.34922 * 116.99707 * 180.02562 * 9 7 2 11 11 O 1.21686 * 120.00103 * 359.97438 * 10 9 7 12 12 C 1.41727 * 119.99794 * 180.02562 * 10 9 7 13 13 N 1.29572 * 125.29144 * 0.25592 * 12 10 9 14 14 N 1.39344 * 113.96251 * 180.19719 * 13 12 10 15 15 C 1.39566 * 125.53068 * 179.84141 * 14 13 12 16 16 C 1.38976 * 120.08496 * 359.69425 * 15 14 13 17 17 C 1.38084 * 119.92114 * 179.97438 * 16 15 14 18 18 C 1.38296 * 120.07872 * 0.26137 * 17 16 15 19 19 C 1.38306 * 120.16599 * 359.48371 * 18 17 16 20 20 C 1.38084 * 120.07715 * 0.51009 * 19 18 17 21 21 C 1.47123 * 108.93172 * 359.58028 * 14 13 12 22 22 H 1.09001 * 110.58284 * 118.77818 * 21 14 13 23 23 C 1.50702 * 110.58069 * 241.52449 * 21 14 13 24 24 O 1.20833 * 119.99605 * 18.54881 * 23 21 14 25 25 O 1.34229 * 120.00024 * 198.54504 * 23 21 14 26 26 C 1.51202 * 125.28611 * 180.02562 * 12 10 9 27 27 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03872 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.95739 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.91848 * 179.72270 * 18 17 16 31 31 H 1.07997 * 119.96390 * 180.26104 * 19 18 17 32 32 H 1.07999 * 120.04246 * 179.76904 * 20 19 18 33 33 H 0.96700 * 116.99287 * 180.02562 * 25 23 21 34 34 H 1.08992 * 110.52978 * 61.34834 * 26 12 10 35 35 H 1.09006 * 110.63964 * 298.65533 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0083 -1.2022 -0.0005 8 1 3.0883 -1.2021 -0.0001 9 8 1.3342 -2.3698 -0.0005 10 6 2.0691 -3.5013 -0.0005 11 8 3.2843 -3.4376 -0.0010 12 6 1.4256 -4.7641 -0.0011 13 7 0.1435 -4.9509 -0.0063 14 7 -0.2329 -6.2926 -0.0012 15 6 -1.5456 -6.7667 -0.0020 16 6 -2.6093 -5.8723 -0.0018 17 6 -3.9067 -6.3451 -0.0031 18 6 -4.1482 -7.7068 0.0009 19 6 -3.0922 -8.6000 -0.0045 20 6 -1.7922 -8.1345 -0.0033 21 6 0.9780 -7.1281 -0.0012 22 1 1.0164 -7.7472 0.8951 23 6 1.0293 -7.9866 -1.2387 24 8 0.3561 -7.7007 -2.2006 25 8 1.8229 -9.0686 -1.2725 26 6 2.1288 -6.1026 -0.0006 27 1 -0.4850 0.8400 0.0004 28 1 -2.4215 -4.8088 -0.0016 29 1 -4.7338 -5.6506 -0.0026 30 1 -5.1639 -8.0737 0.0044 31 1 -3.2845 -9.6626 -0.0056 32 1 -0.9680 -8.8324 -0.0038 33 1 1.8224 -9.5880 -2.0882 34 1 2.7392 -6.2135 0.8956 35 1 2.7413 -6.2153 -0.8953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740305929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:23 Heat of formation + Delta-G solvation = -93.206604 kcal Electronic energy + Delta-G solvation = -24205.335853 eV Core-core repulsion = 20362.819911 eV Total energy + Delta-G solvation = -3842.515943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.47228 -41.19391 -40.43577 -39.51785 -37.38943 -37.23041 -34.62693 -34.30842 -32.85415 -31.74267 -30.27787 -27.93693 -26.25251 -25.59923 -23.82314 -23.05640 -21.81664 -21.01202 -19.96088 -19.47441 -18.97262 -18.69812 -18.10237 -17.19454 -17.00036 -16.81575 -16.70110 -16.24064 -15.93276 -15.47373 -15.23602 -14.75518 -14.58813 -14.43013 -14.35416 -13.90966 -13.77637 -13.56104 -13.20772 -13.00953 -12.71552 -12.51371 -12.42046 -12.22345 -12.14215 -12.09579 -11.95696 -11.70474 -11.39983 -10.79685 -10.74213 -9.95431 -8.65883 -8.61644 -6.38343 -0.35576 0.40605 0.57384 0.76352 1.05462 1.34510 1.43025 1.52027 1.75722 2.00865 2.09498 2.56321 2.73233 2.87375 2.95684 3.13641 3.69888 3.87063 3.96019 4.02263 4.03804 4.27532 4.37952 4.47486 4.50686 4.54365 4.61647 4.84864 5.07454 5.10023 5.34402 5.38859 5.44485 5.60411 5.70897 5.75521 6.12951 6.31200 6.51406 6.78773 6.80423 7.60194 8.57762 Molecular weight = 304.09amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.004202 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.746819 B = 6661.129241 C = 8103.028124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C -0.003 4.003 3 Si 1.025 2.975 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.417 4.417 8 H 0.096 0.904 9 O -0.221 6.221 10 C 0.459 3.541 11 O -0.561 6.561 12 C 0.041 3.959 13 N -0.176 5.176 14 N -0.450 5.450 15 C 0.199 3.801 16 C -0.182 4.182 17 C -0.086 4.086 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.173 4.173 21 C 0.118 3.882 22 H 0.169 0.831 23 C 0.479 3.521 24 O -0.530 6.530 25 O -0.491 6.491 26 C -0.082 4.082 27 H 0.282 0.718 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.130 0.870 33 H 0.434 0.566 34 H 0.154 0.846 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 -20.120 1.178 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.205 4.205 3 Si 0.843 3.157 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.493 4.493 8 H 0.113 0.887 9 O -0.126 6.126 10 C 0.308 3.692 11 O -0.457 6.457 12 C -0.149 4.149 13 N 0.009 4.991 14 N -0.254 5.254 15 C 0.104 3.896 16 C -0.203 4.203 17 C -0.105 4.105 18 C -0.172 4.172 19 C -0.095 4.095 20 C -0.195 4.195 21 C 0.012 3.988 22 H 0.187 0.813 23 C 0.319 3.681 24 O -0.418 6.418 25 O -0.305 6.305 26 C -0.121 4.121 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.148 0.852 33 H 0.297 0.703 34 H 0.172 0.828 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.258 -19.265 1.254 19.770 hybrid contribution 1.034 0.375 -0.819 1.371 sum -3.224 -18.890 0.435 19.168 Atomic orbital electron populations 1.70109 1.08090 1.29961 1.44531 1.26777 0.96866 1.02759 0.94130 0.84585 0.77555 0.73421 0.80181 1.18241 1.18473 1.17949 1.21690 0.92820 0.80593 1.54205 0.88659 1.84063 1.40016 1.14169 1.74305 1.18417 0.85586 0.84514 0.80713 1.90683 1.14548 1.87844 1.52646 1.22485 0.91031 0.94822 1.06514 1.75253 1.17023 1.00804 1.06040 1.48286 1.04024 0.98726 1.74368 1.17653 0.79781 0.93676 0.98501 1.20899 0.93066 0.99111 1.07249 1.21265 0.95068 0.97223 0.96938 1.21448 1.00777 0.92236 1.02738 1.21295 0.90485 1.01480 0.96221 1.20766 0.99346 0.90958 1.08467 1.22141 0.85538 0.93593 0.97557 0.81349 1.23401 0.76021 0.79906 0.88745 1.90803 1.42488 1.70896 1.37643 1.84457 1.61113 1.37278 1.47614 1.21928 0.96706 0.84665 1.08807 0.90813 0.87856 0.83993 0.82588 0.81951 0.85197 0.70263 0.82850 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.59 13.67 21.64 0.30 -53.29 16 2 C 0.00 -0.18 5.50 84.89 0.47 0.29 16 3 Si 1.03 42.89 29.55 68.60 2.03 44.91 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.42 -25.44 9.65 67.96 0.66 -24.78 16 8 H 0.10 5.71 6.86 -2.91 -0.02 5.69 16 9 O -0.22 -13.60 9.66 9.69 0.09 -13.51 16 10 C 0.46 24.29 7.68 68.68 0.53 24.81 16 11 O -0.56 -30.26 16.08 19.23 0.31 -29.95 16 12 C 0.04 1.76 7.08 43.91 0.31 2.07 16 13 N -0.18 -7.71 11.25 -46.40 -0.52 -8.24 16 14 N -0.45 -15.58 3.52 -319.38 -1.12 -16.71 16 15 C 0.20 6.43 6.27 38.27 0.24 6.67 16 16 C -0.18 -6.16 9.64 22.41 0.22 -5.94 16 17 C -0.09 -2.21 10.04 22.25 0.22 -1.99 16 18 C -0.15 -3.02 10.04 22.30 0.22 -2.79 16 19 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 20 C -0.17 -4.21 8.82 22.41 0.20 -4.01 16 21 C 0.12 2.99 3.32 44.51 0.15 3.14 16 22 H 0.17 2.83 8.14 -2.39 -0.02 2.81 16 23 C 0.48 11.42 5.73 71.24 0.41 11.83 16 24 O -0.53 -17.30 16.75 21.94 0.37 -16.93 16 25 O -0.49 -6.94 13.42 -51.41 -0.69 -7.63 16 26 C -0.08 -2.35 6.31 30.39 0.19 -2.15 16 27 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.10 4.14 7.66 -2.91 -0.02 4.12 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.13 2.59 6.37 -2.91 -0.02 2.57 16 33 H 0.43 2.48 9.10 -74.06 -0.67 1.80 16 34 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.11 3.11 7.73 -2.38 -0.02 3.09 16 Total: -1.00 -84.33 321.85 5.28 -79.05 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.49 Total: 16.40 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.03 Total: 5.89 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.35 Total: -78.23 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: 0.08 Total: -68.01 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -84.33 5.28 -79.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740305929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.155 kcal (2) G-P(sol) polarization free energy of solvation -84.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds