Wall clock time and date at job start Fri Apr 10 2020 14:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48496 * 109.47047 * 240.00002 * 3 2 1 5 5 H 1.48495 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46941 * 119.99890 * 3 2 1 7 7 C 1.37881 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47220 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47138 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54517 * 68.37386 * 11 10 9 13 13 O 1.42099 * 110.54378 * 291.62484 * 11 10 9 14 14 N 1.65603 * 104.44927 * 180.02562 * 11 10 9 15 15 C 1.34769 * 119.99898 * 64.99894 * 14 11 10 16 16 O 1.21284 * 120.00432 * 359.97438 * 15 14 11 17 17 C 1.50708 * 119.99859 * 180.02562 * 15 14 11 18 18 H 1.08992 * 109.70209 * 59.48531 * 17 15 14 19 19 C 1.53344 * 109.67061 * 180.02562 * 17 15 14 20 20 C 1.52926 * 108.67069 * 187.26455 * 19 17 15 21 21 N 1.45758 * 110.48462 * 309.24619 * 20 19 17 22 22 C 1.33350 * 124.10845 * 19.05167 * 21 20 19 23 23 O 1.21283 * 118.24281 * 177.79725 * 22 21 20 24 24 C 1.50174 * 123.50638 * 358.08201 * 22 21 20 25 25 H 0.96999 * 119.99327 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47130 * 60.00499 * 9 7 2 27 27 H 1.09001 * 109.47599 * 299.99908 * 9 7 2 28 28 H 1.08998 * 109.46803 * 60.00126 * 10 9 7 29 29 H 1.09001 * 109.46926 * 299.99885 * 10 9 7 30 30 H 0.96997 * 119.99571 * 245.00244 * 14 11 10 31 31 H 1.08999 * 109.60504 * 67.50733 * 19 17 15 32 32 H 1.08995 * 109.73968 * 307.09509 * 19 17 15 33 33 H 1.09003 * 109.29800 * 188.93555 * 20 19 17 34 34 H 1.08997 * 109.30007 * 69.55599 * 20 19 17 35 35 H 0.97001 * 117.94453 * 199.07958 * 21 20 19 36 36 H 1.09003 * 109.39983 * 137.43181 * 24 22 21 37 37 H 1.08998 * 109.40390 * 257.16827 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6638 -5.4201 1.2354 14 7 2.5203 -6.3928 -0.0005 15 6 3.3460 -6.5126 1.0579 16 8 3.2237 -5.7708 2.0096 17 6 4.4222 -7.5676 1.0583 18 1 5.0920 -7.4097 0.2131 19 6 5.2166 -7.4941 2.3679 20 6 6.4103 -8.4451 2.2705 21 7 5.9745 -9.7684 1.8421 22 6 4.8129 -10.0128 1.2345 23 8 4.5752 -11.1502 0.8869 24 6 3.7861 -8.9540 0.9521 25 1 -0.4849 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 2.6185 -6.9857 -0.7618 31 1 4.5786 -7.7920 3.1999 32 1 5.5722 -6.4760 2.5260 33 1 6.8901 -8.5220 3.2462 34 1 7.1270 -8.0510 1.5500 35 1 6.5665 -10.5183 2.0098 36 1 3.3870 -9.0954 -0.0523 37 1 2.9757 -9.0331 1.6767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116488380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:18 Heat of formation + Delta-G solvation = -161.633168 kcal Electronic energy + Delta-G solvation = -23007.273108 eV Core-core repulsion = 19297.233919 eV Total energy + Delta-G solvation = -3710.039190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16216 -39.80898 -36.87042 -36.62373 -35.68358 -34.71928 -33.93990 -33.45631 -31.22625 -30.09888 -26.11891 -25.64769 -23.89922 -21.79035 -21.45676 -19.71511 -19.43582 -18.24454 -17.67638 -17.53284 -16.77260 -16.42250 -15.90863 -15.76322 -15.17313 -15.12037 -14.85457 -14.60805 -14.54802 -13.96336 -13.85028 -13.47440 -12.63467 -12.51713 -12.33292 -12.21400 -11.85351 -11.78513 -11.68456 -11.60120 -11.56731 -11.10784 -11.05032 -10.95954 -10.74061 -10.44514 -10.40318 -10.02646 -9.75055 -9.54211 -9.23381 -8.52612 -6.15033 -4.20936 0.42198 1.88053 2.22314 2.61940 2.82438 3.25964 3.30786 3.32532 3.72130 3.96618 4.05580 4.12022 4.23871 4.34610 4.48172 4.58837 4.71153 4.81810 4.83815 5.02412 5.16906 5.20215 5.27931 5.45629 5.53145 5.65708 5.68720 6.30721 6.39361 6.50718 6.85528 7.24048 7.28740 7.30947 7.77151 7.77398 8.13073 8.81748 9.43770 10.96025 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.003397 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.344201 B = 8240.244483 C = 9011.673482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.575 4.575 11 S 2.563 3.437 12 O -0.952 6.952 13 O -0.937 6.937 14 N -1.058 6.058 15 C 0.540 3.460 16 O -0.481 6.481 17 C -0.114 4.114 18 H 0.117 0.883 19 C -0.124 4.124 20 C 0.109 3.891 21 N -0.721 5.721 22 C 0.526 3.474 23 O -0.553 6.553 24 C -0.133 4.133 25 H 0.266 0.734 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.429 0.571 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.112 0.888 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 -16.931 1.974 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.663 3.337 12 O -0.943 6.943 13 O -0.927 6.927 14 N -0.819 5.819 15 C 0.325 3.675 16 O -0.351 6.351 17 C -0.137 4.137 18 H 0.135 0.865 19 C -0.162 4.162 20 C -0.015 4.015 21 N -0.373 5.373 22 C 0.313 3.687 23 O -0.432 6.432 24 C -0.173 4.173 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.264 0.736 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.890 -16.898 2.481 21.398 hybrid contribution 1.304 0.715 -0.395 1.539 sum 14.194 -16.183 2.086 21.627 Atomic orbital electron populations 1.69942 1.06129 1.27397 1.49316 1.25066 0.94995 0.99559 0.94814 0.86499 0.79480 0.82397 0.78720 1.20069 1.21051 1.20015 1.20929 0.93051 0.89581 1.52502 0.92007 1.18990 0.92626 0.90300 0.99056 1.30337 1.13717 1.16129 1.10740 1.06807 0.75020 0.77289 0.74534 1.93599 1.70407 1.85257 1.45031 1.93601 1.70187 1.84347 1.44578 1.55478 1.49276 1.50398 1.26765 1.20352 0.81490 0.84624 0.81032 1.90933 1.69082 1.42819 1.32316 1.21553 0.96570 0.93332 1.02235 0.86483 1.21826 0.96466 1.01640 0.96310 1.21463 0.96810 0.82155 1.01054 1.45506 1.20106 1.11165 1.60533 1.19881 0.82413 0.89652 0.76751 1.90797 1.77507 1.22746 1.52103 1.21682 0.98350 0.90897 1.06338 0.92406 0.94742 0.94569 0.85063 0.86014 0.73600 0.89616 0.87924 0.89704 0.91012 0.76325 0.87018 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 10 C -0.57 -10.84 5.82 37.16 0.22 -10.62 16 11 S 2.56 44.11 5.11 -107.50 -0.55 43.56 16 12 O -0.95 -18.19 18.08 -57.54 -1.04 -19.23 16 13 O -0.94 -19.68 17.04 -64.79 -1.10 -20.78 16 14 N -1.06 -11.87 5.52 31.22 0.17 -11.70 16 15 C 0.54 6.03 6.86 -10.98 -0.08 5.96 16 16 O -0.48 -7.28 14.00 -11.59 -0.16 -7.44 16 17 C -0.11 -0.78 2.59 -91.64 -0.24 -1.02 16 18 H 0.12 0.50 8.13 -51.93 -0.42 0.08 16 19 C -0.12 -0.76 4.71 -26.59 -0.13 -0.88 16 20 C 0.11 0.42 7.17 -4.48 -0.03 0.39 16 21 N -0.72 -4.29 5.45 -61.38 -0.33 -4.62 16 22 C 0.53 4.68 7.72 -11.87 -0.09 4.58 16 23 O -0.55 -7.28 17.78 5.55 0.10 -7.18 16 24 C -0.13 -0.97 5.21 -28.19 -0.15 -1.12 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.13 2.40 7.19 -51.93 -0.37 2.02 16 29 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.43 3.07 8.55 -34.47 -0.29 2.78 16 31 H 0.09 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.10 0.63 7.90 -51.93 -0.41 0.22 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.40 2.01 8.80 -40.82 -0.36 1.65 16 36 H 0.11 0.66 7.97 -51.93 -0.41 0.25 16 37 H 0.11 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -38.98 328.27 -8.07 -47.05 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.77 Total: 0.09 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.04 Total: -15.14 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.57 Total: -41.85 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -2.21 Total: -54.63 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 44.11 SS G_CDS: -0.55 Total: 43.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -38.98 -8.07 -47.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116488380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.583 kcal (2) G-P(sol) polarization free energy of solvation -38.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds