Wall clock time and date at job start Fri Apr 10 2020 14:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48496 * 109.47047 * 240.00002 * 3 2 1 5 5 H 1.48495 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46941 * 119.99890 * 3 2 1 7 7 C 1.37881 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47220 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47138 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54517 * 68.37386 * 11 10 9 13 13 O 1.42099 * 110.54378 * 291.62484 * 11 10 9 14 14 N 1.65603 * 104.44927 * 180.02562 * 11 10 9 15 15 C 1.34769 * 119.99898 * 64.99894 * 14 11 10 16 16 O 1.21284 * 120.00432 * 359.97438 * 15 14 11 17 17 C 1.50708 * 119.99859 * 180.02562 * 15 14 11 18 18 H 1.08992 * 109.70209 * 59.48531 * 17 15 14 19 19 C 1.53344 * 109.67061 * 180.02562 * 17 15 14 20 20 C 1.52926 * 108.67069 * 187.26455 * 19 17 15 21 21 N 1.45758 * 110.48462 * 309.24619 * 20 19 17 22 22 C 1.33350 * 124.10845 * 19.05167 * 21 20 19 23 23 O 1.21283 * 118.24281 * 177.79725 * 22 21 20 24 24 C 1.50174 * 123.50638 * 358.08201 * 22 21 20 25 25 H 0.96999 * 119.99327 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47130 * 60.00499 * 9 7 2 27 27 H 1.09001 * 109.47599 * 299.99908 * 9 7 2 28 28 H 1.08998 * 109.46803 * 60.00126 * 10 9 7 29 29 H 1.09001 * 109.46926 * 299.99885 * 10 9 7 30 30 H 0.96997 * 119.99571 * 245.00244 * 14 11 10 31 31 H 1.08999 * 109.60504 * 67.50733 * 19 17 15 32 32 H 1.08995 * 109.73968 * 307.09509 * 19 17 15 33 33 H 1.09003 * 109.29800 * 188.93555 * 20 19 17 34 34 H 1.08997 * 109.30007 * 69.55599 * 20 19 17 35 35 H 0.97001 * 117.94453 * 199.07958 * 21 20 19 36 36 H 1.09003 * 109.39983 * 137.43181 * 24 22 21 37 37 H 1.08998 * 109.40390 * 257.16827 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6638 -5.4201 1.2354 14 7 2.5203 -6.3928 -0.0005 15 6 3.3460 -6.5126 1.0579 16 8 3.2237 -5.7708 2.0096 17 6 4.4222 -7.5676 1.0583 18 1 5.0920 -7.4097 0.2131 19 6 5.2166 -7.4941 2.3679 20 6 6.4103 -8.4451 2.2705 21 7 5.9745 -9.7684 1.8421 22 6 4.8129 -10.0128 1.2345 23 8 4.5752 -11.1502 0.8869 24 6 3.7861 -8.9540 0.9521 25 1 -0.4849 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 2.6185 -6.9857 -0.7618 31 1 4.5786 -7.7920 3.1999 32 1 5.5722 -6.4760 2.5260 33 1 6.8901 -8.5220 3.2462 34 1 7.1270 -8.0510 1.5500 35 1 6.5665 -10.5183 2.0098 36 1 3.3870 -9.0954 -0.0523 37 1 2.9757 -9.0331 1.6767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116488380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:17 Heat of formation + Delta-G solvation = -194.964258 kcal Electronic energy + Delta-G solvation = -23008.718453 eV Core-core repulsion = 19297.233919 eV Total energy + Delta-G solvation = -3711.484534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.92990 -40.65583 -38.30782 -37.37165 -37.21844 -35.96452 -35.71852 -34.07800 -33.16909 -30.64089 -27.65441 -26.76057 -24.50065 -23.62024 -22.37907 -20.75496 -20.19704 -19.38052 -18.94698 -18.35603 -18.20380 -17.44055 -17.05651 -16.72581 -16.53951 -16.45282 -16.14000 -15.64048 -15.23789 -15.12174 -14.68477 -14.47252 -14.43051 -13.85861 -13.74918 -13.36627 -13.25568 -12.92818 -12.88153 -12.83712 -12.80282 -12.31756 -12.23859 -12.14201 -12.08171 -12.01369 -11.76692 -11.60998 -11.08517 -10.82574 -10.64078 -10.04680 -8.26492 -6.40760 -1.00433 0.94001 1.41565 1.42708 1.45314 1.53474 1.56895 2.31623 2.37833 2.57655 2.91910 3.07164 3.17399 3.47905 3.58646 3.71687 3.79590 4.00862 4.06125 4.14801 4.23488 4.42715 4.61692 4.70428 4.71930 4.87219 5.03175 5.23459 5.23493 5.24710 5.64509 5.67362 5.83495 6.04168 6.30985 6.38827 6.72163 7.18050 7.29420 8.85735 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.003397 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.344201 B = 8240.244483 C = 9011.673482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.576 4.576 11 S 2.596 3.404 12 O -0.973 6.973 13 O -0.979 6.979 14 N -1.037 6.037 15 C 0.540 3.460 16 O -0.520 6.520 17 C -0.100 4.100 18 H 0.156 0.844 19 C -0.128 4.128 20 C 0.113 3.887 21 N -0.710 5.710 22 C 0.526 3.474 23 O -0.604 6.604 24 C -0.134 4.134 25 H 0.268 0.732 26 H 0.013 0.987 27 H 0.004 0.996 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.450 0.550 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.407 0.593 36 H 0.127 0.873 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.506 -17.164 1.503 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.018 4.018 10 C -0.709 4.709 11 S 2.695 3.305 12 O -0.963 6.963 13 O -0.969 6.969 14 N -0.804 5.804 15 C 0.327 3.673 16 O -0.392 6.392 17 C -0.123 4.123 18 H 0.174 0.826 19 C -0.166 4.166 20 C -0.010 4.010 21 N -0.360 5.360 22 C 0.313 3.687 23 O -0.486 6.486 24 C -0.174 4.174 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.022 0.978 28 H 0.156 0.844 29 H 0.172 0.828 30 H 0.291 0.709 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.244 0.756 36 H 0.146 0.854 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.073 -17.117 2.001 23.565 hybrid contribution 0.369 0.712 -0.205 0.827 sum 16.442 -16.405 1.796 23.296 Atomic orbital electron populations 1.70094 1.08096 1.28464 1.50679 1.26131 0.95877 1.03928 0.94274 0.85342 0.78131 0.77141 0.79513 1.18457 1.21008 1.18916 1.21464 0.94029 0.90650 1.51842 0.90509 1.18832 0.93539 0.92863 0.96561 1.30221 1.12778 1.15232 1.12698 1.05480 0.74904 0.77026 0.73097 1.93567 1.71562 1.85546 1.45623 1.93550 1.71896 1.84959 1.46486 1.54907 1.48142 1.49295 1.28102 1.21200 0.81472 0.84792 0.79799 1.90930 1.69970 1.44656 1.33689 1.21637 0.95282 0.91010 1.04386 0.82622 1.21880 0.97000 1.02486 0.95264 1.21638 0.96024 0.80362 1.03026 1.45529 1.19203 1.12409 1.58904 1.20044 0.83111 0.89053 0.76476 1.90780 1.78662 1.24602 1.54571 1.21706 0.97909 0.90590 1.07149 0.92338 0.96823 0.97772 0.84357 0.82848 0.70924 0.91101 0.87615 0.87610 0.88461 0.75640 0.85446 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.98 42.82 29.54 68.60 2.03 44.85 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.58 -21.52 5.82 71.98 0.42 -21.10 16 11 S 2.60 88.78 5.11 -56.49 -0.29 88.49 16 12 O -0.97 -36.85 18.08 -127.65 -2.31 -39.16 16 13 O -0.98 -42.00 17.04 -120.71 -2.06 -44.05 16 14 N -1.04 -21.24 5.52 -173.53 -0.96 -22.19 16 15 C 0.54 10.97 6.86 87.66 0.60 11.57 16 16 O -0.52 -15.24 14.00 13.35 0.19 -15.06 16 17 C -0.10 -1.07 2.59 -11.45 -0.03 -1.10 16 18 H 0.16 0.55 8.13 -2.39 -0.02 0.53 16 19 C -0.13 -1.20 4.71 30.68 0.14 -1.06 16 20 C 0.11 0.44 7.17 86.49 0.62 1.06 16 21 N -0.71 -6.48 5.45 -467.30 -2.55 -9.03 16 22 C 0.53 8.36 7.72 87.71 0.68 9.04 16 23 O -0.60 -15.43 17.78 -3.04 -0.05 -15.49 16 24 C -0.13 -1.67 5.21 29.65 0.15 -1.51 16 25 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.14 4.97 7.19 -2.39 -0.02 4.95 16 29 H 0.15 4.63 8.14 -2.39 -0.02 4.62 16 30 H 0.45 5.15 8.55 -96.75 -0.83 4.32 16 31 H 0.07 0.89 8.13 -2.39 -0.02 0.88 16 32 H 0.11 0.99 7.90 -2.39 -0.02 0.97 16 33 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.41 3.07 8.80 -92.71 -0.82 2.25 16 36 H 0.13 1.17 7.97 -2.39 -0.02 1.15 16 37 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 Total: -1.00 -87.92 328.27 -2.81 -90.72 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -0.53 Total: 8.39 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 3.43 Total: -31.14 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.22 Total: -87.55 kcal Atomic # 8 Polarization: -109.53 SS G_CDS: -4.23 Total: -113.76 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 88.78 SS G_CDS: -0.29 Total: 88.49 kcal Total: -87.92 -2.81 -90.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116488380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.240 kcal (2) G-P(sol) polarization free energy of solvation -87.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds