Wall clock time and date at job start Fri Apr 10 2020 14:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48497 * 109.46831 * 239.99683 * 3 2 1 5 5 H 1.48504 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47226 * 119.99772 * 3 2 1 7 7 C 1.37878 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99770 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00183 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.39733 * 66.46032 * 9 7 2 11 11 O 1.42105 * 106.40308 * 293.54279 * 9 7 2 12 12 N 1.65596 * 107.21653 * 179.97438 * 9 7 2 13 13 C 1.46923 * 120.64437 * 90.00662 * 12 9 7 14 14 C 1.53179 * 108.78655 * 233.61015 * 13 12 9 15 15 C 1.53092 * 109.32994 * 305.30345 * 14 13 12 16 16 C 1.53109 * 109.42459 * 61.41378 * 15 14 13 17 17 C 1.46923 * 120.64850 * 270.02124 * 12 9 7 18 18 C 1.53097 * 109.27872 * 181.01217 * 15 14 13 19 19 O 1.43235 * 108.65577 * 169.52588 * 18 15 14 20 20 C 1.42963 * 112.97009 * 291.49708 * 19 18 15 21 21 C 1.50350 * 109.78944 * 49.53856 * 20 19 18 22 22 O 1.21281 * 118.81747 * 164.22061 * 21 20 19 23 23 N 1.33849 * 122.36484 * 344.24779 * 21 20 19 24 24 H 0.97003 * 120.00132 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58829 * 113.82575 * 13 12 9 26 26 H 1.08997 * 109.70098 * 353.46886 * 13 12 9 27 27 H 1.09001 * 109.49817 * 185.34554 * 14 13 12 28 28 H 1.09005 * 109.51988 * 65.27773 * 14 13 12 29 29 H 1.08998 * 109.49772 * 58.52491 * 16 15 14 30 30 H 1.09005 * 109.49643 * 178.61698 * 16 15 14 31 31 H 1.08998 * 109.58933 * 246.16205 * 17 12 9 32 32 H 1.08999 * 109.58957 * 6.44121 * 17 12 9 33 33 H 1.09007 * 109.60707 * 49.77570 * 18 15 14 34 34 H 1.08996 * 109.60881 * 289.27972 * 18 15 14 35 35 H 1.09003 * 109.41768 * 169.63162 * 20 19 18 36 36 H 1.09001 * 109.42435 * 289.50768 * 20 19 18 37 37 H 0.96998 * 118.72188 * 181.87999 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7201 0.0019 10 8 0.4510 -2.7961 -1.2475 11 8 0.4518 -2.7945 1.2520 12 7 2.2484 -3.9354 0.0016 13 6 2.7579 -4.4845 1.2655 14 6 4.2882 -4.4194 1.2503 15 6 4.8133 -5.1306 0.0005 16 6 4.2868 -4.4197 -1.2491 17 6 2.7565 -4.4853 -1.2626 18 6 6.3437 -5.0868 -0.0007 19 8 6.8262 -5.9572 -1.0309 20 6 6.5873 -7.3387 -0.7514 21 6 5.1499 -7.5373 -0.3579 22 8 4.6914 -8.6600 -0.3656 23 7 4.3578 -6.5194 0.0002 24 1 -0.4850 0.8401 -0.0004 25 1 2.4375 -5.5212 1.3690 26 1 2.3756 -3.8986 2.1013 27 1 4.6821 -4.9098 2.1405 28 1 4.6083 -3.3774 1.2374 29 1 4.6061 -3.3776 -1.2365 30 1 4.6798 -4.9103 -2.1397 31 1 2.4361 -5.5221 -1.3650 32 1 2.3708 -3.8997 -2.0971 33 1 6.7199 -5.4209 0.9663 34 1 6.6803 -4.0685 -0.1947 35 1 6.8048 -7.9311 -1.6401 36 1 7.2333 -7.6602 0.0656 37 1 3.4463 -6.7109 0.2708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:39 Heat of formation + Delta-G solvation = -165.525181 kcal Electronic energy + Delta-G solvation = -24470.739856 eV Core-core repulsion = 20760.531896 eV Total energy + Delta-G solvation = -3710.207960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12171 -38.37644 -37.46333 -35.38359 -34.24091 -34.02210 -33.12294 -31.45648 -30.97530 -28.34862 -26.70191 -26.18312 -23.31461 -22.98525 -21.28944 -19.37312 -18.68935 -17.87323 -17.58849 -16.88686 -16.38363 -15.89418 -15.23778 -15.18964 -15.11178 -14.77194 -14.68405 -14.37584 -13.90778 -13.56269 -13.50445 -13.26653 -12.84257 -12.30404 -12.09357 -11.93854 -11.59765 -11.46728 -11.25582 -11.19275 -11.02627 -10.89846 -10.67987 -10.65058 -10.36800 -10.18503 -10.14480 -9.62927 -9.29452 -9.20473 -8.98913 -8.33047 -6.75114 -5.38336 2.15959 2.36358 2.92977 3.03428 3.08915 3.13069 3.50627 3.98870 4.13555 4.34051 4.46682 4.58493 4.60824 4.66600 4.85751 5.06897 5.14320 5.22687 5.33813 5.43578 5.54342 5.56825 5.70628 5.83723 5.85829 5.96532 6.08164 6.11454 6.30225 6.36545 6.39663 6.66447 6.73487 7.15537 7.26446 7.45617 7.89801 7.97475 8.83015 10.18579 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.004882 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.681259 B = 5734.069334 C = 6312.861680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.003 7.003 11 O -1.003 7.003 12 N -1.012 6.012 13 C 0.125 3.875 14 C -0.139 4.139 15 C 0.138 3.862 16 C -0.137 4.137 17 C 0.126 3.874 18 C 0.053 3.947 19 O -0.366 6.366 20 C 0.048 3.952 21 C 0.490 3.510 22 O -0.552 6.552 23 N -0.704 5.704 24 H 0.292 0.708 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.224 -7.698 0.948 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.993 6.993 11 O -0.994 6.994 12 N -0.847 5.847 13 C -0.001 4.001 14 C -0.179 4.179 15 C 0.051 3.949 16 C -0.177 4.177 17 C -0.001 4.001 18 C -0.024 4.024 19 O -0.284 6.284 20 C -0.032 4.032 21 C 0.276 3.724 22 O -0.431 6.431 23 N -0.358 5.358 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 13.156 -8.250 0.707 15.545 hybrid contribution 0.492 1.134 0.363 1.288 sum 13.648 -7.116 1.070 15.429 Atomic orbital electron populations 1.69887 1.06812 1.30908 1.39882 1.24755 0.94453 1.00806 0.88528 0.86204 0.79892 0.79757 0.79721 1.18859 1.20138 1.18885 1.30558 1.05975 1.11711 1.67013 0.87998 1.00585 0.72159 0.72982 0.72791 1.93359 1.72673 1.87526 1.45743 1.93357 1.72710 1.87574 1.45742 1.58302 1.62068 1.54924 1.09417 1.21142 0.92256 0.99223 0.87519 1.22277 0.97598 1.02113 0.95911 1.21123 0.94800 0.81348 0.97587 1.22336 0.97023 1.01584 0.96773 1.21178 0.92635 0.99286 0.86964 1.23145 0.91176 0.96412 0.91642 1.88203 1.80456 1.15088 1.44680 1.22814 0.91661 0.84554 1.04166 1.21003 0.89811 0.84714 0.76879 1.90782 1.75140 1.23114 1.54078 1.45959 1.16395 1.06277 1.67147 0.89779 0.92689 0.88200 0.90447 0.88872 0.89468 0.90269 0.92554 0.88528 0.91712 0.86371 0.85334 0.89379 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.19 13.19 55.43 0.73 -23.46 16 2 C 0.13 3.55 5.46 -17.82 -0.10 3.46 16 3 Si 0.92 19.68 29.54 -169.99 -5.02 14.65 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -1.02 -26.38 9.75 30.60 0.30 -26.08 16 8 H 0.10 2.35 7.81 -52.48 -0.41 1.94 16 9 S 2.71 68.56 4.97 -107.50 -0.53 68.02 16 10 O -1.00 -28.34 16.73 -57.17 -0.96 -29.30 16 11 O -1.00 -28.06 16.74 -57.17 -0.96 -29.02 16 12 N -1.01 -18.65 3.29 -113.54 -0.37 -19.03 16 13 C 0.13 1.87 6.01 -3.72 -0.02 1.85 16 14 C -0.14 -1.56 5.05 -26.59 -0.13 -1.70 16 15 C 0.14 1.51 0.81 -131.85 -0.11 1.40 16 16 C -0.14 -1.73 4.99 -26.58 -0.13 -1.86 16 17 C 0.13 2.00 6.05 -3.72 -0.02 1.98 16 18 C 0.05 0.47 5.54 37.21 0.21 0.67 16 19 O -0.37 -3.63 10.56 -35.23 -0.37 -4.00 16 20 C 0.05 0.44 6.98 35.84 0.25 0.69 16 21 C 0.49 6.06 7.84 -11.57 -0.09 5.97 16 22 O -0.55 -8.87 17.84 5.56 0.10 -8.77 16 23 N -0.70 -8.30 4.23 -48.02 -0.20 -8.50 16 24 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.05 0.73 6.73 -51.93 -0.35 0.38 16 26 H 0.10 1.62 7.14 -51.93 -0.37 1.25 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.06 0.84 7.49 -51.93 -0.39 0.45 16 32 H 0.10 1.68 7.12 -51.93 -0.37 1.31 16 33 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 34 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 5.05 6.50 -40.82 -0.27 4.78 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -35.62 312.82 -7.38 -43.00 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.65 Total: 5.32 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 0.15 Total: -13.62 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.15 Total: -50.99 kcal Atomic # 8 Polarization: -68.91 SS G_CDS: -2.19 Total: -71.10 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 68.56 SS G_CDS: -0.53 Total: 68.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.62 -7.38 -43.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.522 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds