Wall clock time and date at job start Fri Apr 10 2020 14:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48497 * 109.46831 * 239.99683 * 3 2 1 5 5 H 1.48504 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47226 * 119.99772 * 3 2 1 7 7 C 1.37878 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99770 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00183 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.39733 * 66.46032 * 9 7 2 11 11 O 1.42105 * 106.40308 * 293.54279 * 9 7 2 12 12 N 1.65596 * 107.21653 * 179.97438 * 9 7 2 13 13 C 1.46923 * 120.64437 * 90.00662 * 12 9 7 14 14 C 1.53179 * 108.78655 * 233.61015 * 13 12 9 15 15 C 1.53092 * 109.32994 * 305.30345 * 14 13 12 16 16 C 1.53109 * 109.42459 * 61.41378 * 15 14 13 17 17 C 1.46923 * 120.64850 * 270.02124 * 12 9 7 18 18 C 1.53097 * 109.27872 * 181.01217 * 15 14 13 19 19 O 1.43235 * 108.65577 * 169.52588 * 18 15 14 20 20 C 1.42963 * 112.97009 * 291.49708 * 19 18 15 21 21 C 1.50350 * 109.78944 * 49.53856 * 20 19 18 22 22 O 1.21281 * 118.81747 * 164.22061 * 21 20 19 23 23 N 1.33849 * 122.36484 * 344.24779 * 21 20 19 24 24 H 0.97003 * 120.00132 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58829 * 113.82575 * 13 12 9 26 26 H 1.08997 * 109.70098 * 353.46886 * 13 12 9 27 27 H 1.09001 * 109.49817 * 185.34554 * 14 13 12 28 28 H 1.09005 * 109.51988 * 65.27773 * 14 13 12 29 29 H 1.08998 * 109.49772 * 58.52491 * 16 15 14 30 30 H 1.09005 * 109.49643 * 178.61698 * 16 15 14 31 31 H 1.08998 * 109.58933 * 246.16205 * 17 12 9 32 32 H 1.08999 * 109.58957 * 6.44121 * 17 12 9 33 33 H 1.09007 * 109.60707 * 49.77570 * 18 15 14 34 34 H 1.08996 * 109.60881 * 289.27972 * 18 15 14 35 35 H 1.09003 * 109.41768 * 169.63162 * 20 19 18 36 36 H 1.09001 * 109.42435 * 289.50768 * 20 19 18 37 37 H 0.96998 * 118.72188 * 181.87999 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7201 0.0019 10 8 0.4510 -2.7961 -1.2475 11 8 0.4518 -2.7945 1.2520 12 7 2.2484 -3.9354 0.0016 13 6 2.7579 -4.4845 1.2655 14 6 4.2882 -4.4194 1.2503 15 6 4.8133 -5.1306 0.0005 16 6 4.2868 -4.4197 -1.2491 17 6 2.7565 -4.4853 -1.2626 18 6 6.3437 -5.0868 -0.0007 19 8 6.8262 -5.9572 -1.0309 20 6 6.5873 -7.3387 -0.7514 21 6 5.1499 -7.5373 -0.3579 22 8 4.6914 -8.6600 -0.3656 23 7 4.3578 -6.5194 0.0002 24 1 -0.4850 0.8401 -0.0004 25 1 2.4375 -5.5212 1.3690 26 1 2.3756 -3.8986 2.1013 27 1 4.6821 -4.9098 2.1405 28 1 4.6083 -3.3774 1.2374 29 1 4.6061 -3.3776 -1.2365 30 1 4.6798 -4.9103 -2.1397 31 1 2.4361 -5.5221 -1.3650 32 1 2.3708 -3.8997 -2.0971 33 1 6.7199 -5.4209 0.9663 34 1 6.6803 -4.0685 -0.1947 35 1 6.8048 -7.9311 -1.6401 36 1 7.2333 -7.6602 0.0656 37 1 3.4463 -6.7109 0.2708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192953500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:37 Heat of formation + Delta-G solvation = -196.260521 kcal Electronic energy + Delta-G solvation = -24472.072640 eV Core-core repulsion = 20760.531896 eV Total energy + Delta-G solvation = -3711.540745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.01995 -39.45876 -38.34347 -37.48514 -36.15207 -35.41297 -35.06886 -32.44857 -32.12225 -29.17007 -28.23613 -27.59679 -24.44536 -24.03082 -22.37246 -20.78810 -20.00955 -19.36584 -18.66919 -18.28316 -17.74930 -17.05089 -16.77120 -16.69373 -16.01254 -15.97178 -15.71079 -15.57934 -15.24442 -15.15403 -14.69487 -14.40908 -14.03402 -13.85016 -13.43120 -13.33220 -12.96672 -12.86154 -12.59137 -12.52101 -12.49065 -12.40643 -12.31594 -12.18104 -11.84555 -11.56517 -11.45931 -11.20662 -10.95714 -10.50876 -10.19636 -9.78072 -8.71940 -7.45971 0.28302 1.37323 1.39257 1.44346 1.52036 2.06308 2.22408 2.60960 2.78153 2.82241 3.34292 3.53104 3.70504 3.71884 3.81785 4.06558 4.13400 4.25723 4.28624 4.43348 4.45223 4.52499 4.58734 4.65292 4.76883 4.82006 4.85270 4.99322 5.13485 5.21514 5.22584 5.35349 5.55811 5.90516 5.94216 5.94398 6.26838 6.80775 7.03562 8.22951 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.004882 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.681259 B = 5734.069334 C = 6312.861680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.991 3.009 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.246 1.246 7 C -1.031 5.031 8 H 0.127 0.873 9 S 2.714 3.286 10 O -1.046 7.046 11 O -1.043 7.043 12 N -1.005 6.005 13 C 0.113 3.887 14 C -0.131 4.131 15 C 0.141 3.859 16 C -0.131 4.131 17 C 0.120 3.880 18 C 0.055 3.945 19 O -0.373 6.373 20 C 0.053 3.947 21 C 0.488 3.512 22 O -0.597 6.597 23 N -0.703 5.703 24 H 0.297 0.703 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.941 -7.202 1.413 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.169 1.169 7 C -1.165 5.165 8 H 0.146 0.854 9 S 2.817 3.183 10 O -1.036 7.036 11 O -1.033 7.033 12 N -0.844 5.844 13 C -0.012 4.012 14 C -0.170 4.170 15 C 0.054 3.946 16 C -0.171 4.171 17 C -0.006 4.006 18 C -0.022 4.022 19 O -0.291 6.291 20 C -0.026 4.026 21 C 0.276 3.724 22 O -0.479 6.479 23 N -0.355 5.355 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.133 0.867 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 16.882 -7.757 1.174 18.616 hybrid contribution -0.707 0.870 0.214 1.141 sum 16.175 -6.887 1.388 17.635 Atomic orbital electron populations 1.70008 1.08998 1.32325 1.41713 1.26060 0.95283 1.05518 0.87560 0.85143 0.78698 0.74311 0.80916 1.17254 1.19536 1.16937 1.30901 1.07334 1.11943 1.66324 0.85450 1.00139 0.72868 0.73995 0.71302 1.93292 1.74702 1.88408 1.47230 1.93294 1.74597 1.88410 1.46967 1.57711 1.61310 1.53643 1.11727 1.21451 0.95286 0.99361 0.85124 1.22251 0.94134 1.03149 0.97502 1.21197 0.96762 0.80352 0.96264 1.22308 0.93854 1.02528 0.98437 1.21351 0.95362 0.98865 0.85003 1.23279 0.88764 0.97441 0.92733 1.88214 1.80159 1.15333 1.45391 1.22906 0.89432 0.84622 1.05660 1.21651 0.91032 0.83925 0.75832 1.90764 1.76221 1.24830 1.56040 1.46063 1.16136 1.06760 1.66582 0.89266 0.91249 0.89851 0.87289 0.88152 0.88848 0.89245 0.91886 0.90749 0.89241 0.84557 0.84251 0.86657 0.76641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.80 13.19 21.45 0.28 -52.52 16 2 C 0.07 3.65 5.46 84.65 0.46 4.12 16 3 Si 0.99 39.19 29.54 68.60 2.03 41.22 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 7 C -1.03 -53.40 9.75 67.73 0.66 -52.74 16 8 H 0.13 5.68 7.81 -2.91 -0.02 5.66 16 9 S 2.71 141.49 4.97 -56.49 -0.28 141.21 16 10 O -1.05 -61.93 16.73 -128.00 -2.14 -64.07 16 11 O -1.04 -60.71 16.74 -128.00 -2.14 -62.85 16 12 N -1.01 -37.25 3.29 -513.13 -1.69 -38.93 16 13 C 0.11 3.28 6.01 86.36 0.52 3.80 16 14 C -0.13 -2.53 5.05 30.68 0.16 -2.37 16 15 C 0.14 2.62 0.81 3.77 0.00 2.62 16 16 C -0.13 -3.03 4.99 30.69 0.15 -2.87 16 17 C 0.12 3.80 6.05 86.36 0.52 4.33 16 18 C 0.05 0.70 5.54 72.01 0.40 1.10 16 19 O -0.37 -5.83 10.56 -148.98 -1.57 -7.40 16 20 C 0.05 0.78 6.98 71.13 0.50 1.28 16 21 C 0.49 11.02 7.84 87.69 0.69 11.70 16 22 O -0.60 -18.62 17.84 -3.03 -0.05 -18.67 16 23 N -0.70 -15.07 4.23 -424.73 -1.80 -16.86 16 24 H 0.30 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.07 1.80 6.73 -2.39 -0.02 1.78 16 26 H 0.08 2.71 7.14 -2.39 -0.02 2.69 16 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 1.91 7.94 -2.38 -0.02 1.89 16 31 H 0.06 1.89 7.49 -2.39 -0.02 1.87 16 32 H 0.07 2.68 7.12 -2.39 -0.02 2.67 16 33 H 0.09 0.78 8.06 -2.38 -0.02 0.76 16 34 H 0.14 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.40 9.43 6.50 -92.71 -0.60 8.83 16 Total: -1.00 -80.72 312.82 -2.81 -83.53 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.50 Total: 24.40 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 4.06 Total: -29.04 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.20 Total: -108.32 kcal Atomic # 8 Polarization: -147.08 SS G_CDS: -5.91 Total: -152.99 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 141.49 SS G_CDS: -0.28 Total: 141.21 kcal Total: -80.72 -2.81 -83.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.734 kcal (2) G-P(sol) polarization free energy of solvation -80.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds