Wall clock time and date at job start Fri Apr 10 2020 14:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99364 * 3 2 1 6 6 H 1.48500 * 109.47260 * 149.99660 * 3 2 1 7 7 C 1.38947 * 120.00633 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00016 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00722 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00349 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00033 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99986 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47201 * 180.02562 * 12 10 9 14 14 C 1.34770 * 119.99885 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00427 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99677 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.54965 * 335.19320 * 16 14 13 18 18 C 1.53036 * 109.54728 * 215.00124 * 16 14 13 19 19 C 1.52587 * 109.98462 * 176.40031 * 18 16 14 20 20 C 1.52589 * 110.64209 * 69.98781 * 19 18 16 21 21 C 1.53040 * 109.98567 * 290.01171 * 20 19 18 22 22 S 1.81667 * 108.99671 * 63.64839 * 21 20 19 23 23 O 1.42097 * 108.66324 * 191.36965 * 22 21 20 24 24 O 1.42101 * 108.66368 * 60.02918 * 22 21 20 25 25 H 0.96995 * 120.00488 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99662 * 359.97438 * 9 7 2 27 27 H 1.08991 * 109.47330 * 59.99830 * 12 10 9 28 28 H 1.09007 * 109.47136 * 299.99880 * 12 10 9 29 29 H 0.97009 * 119.99515 * 359.97438 * 13 12 10 30 30 H 1.09002 * 109.38667 * 296.55960 * 18 16 14 31 31 H 1.09005 * 109.38772 * 56.24512 * 18 16 14 32 32 H 1.09006 * 109.24309 * 190.28969 * 19 18 16 33 33 H 1.09000 * 109.24367 * 309.68345 * 19 18 16 34 34 H 1.09000 * 109.38627 * 169.85649 * 20 19 18 35 35 H 1.08997 * 109.38495 * 50.17479 * 20 19 18 36 36 H 1.08997 * 109.54734 * 303.79228 * 21 20 19 37 37 H 1.08999 * 109.54901 * 183.50656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3703 0.0033 13 7 6.0493 -3.7515 0.0037 14 6 7.3743 -3.9977 0.0042 15 8 8.1624 -3.0758 0.0048 16 6 7.8767 -5.4185 0.0051 17 1 7.1191 -6.0730 0.4363 18 6 9.1609 -5.5070 0.8328 19 6 9.6297 -6.9567 0.9147 20 6 10.1423 -7.4338 -0.4410 21 6 8.9755 -7.5758 -1.4210 22 16 8.2334 -5.9408 -1.6979 23 8 7.0033 -6.1109 -2.3885 24 8 9.2237 -5.0779 -2.2401 25 1 -0.4850 0.8400 -0.0004 26 1 3.8649 -0.3632 0.0007 27 1 5.9235 -1.8561 0.8932 28 1 5.9249 -1.8568 -0.8867 29 1 5.4189 -4.4888 0.0035 30 1 9.9365 -4.9020 0.3630 31 1 8.9702 -5.1311 1.8380 32 1 10.4312 -7.0342 1.6494 33 1 8.7963 -7.5867 1.2256 34 1 10.6347 -8.3990 -0.3224 35 1 10.8575 -6.7103 -0.8323 36 1 8.2278 -8.2496 -1.0026 37 1 9.3403 -7.9758 -2.3670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323289200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:17 Heat of formation + Delta-G solvation = -142.860638 kcal Electronic energy + Delta-G solvation = -23057.233278 eV Core-core repulsion = 19348.008126 eV Total energy + Delta-G solvation = -3709.225152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06848 -38.48118 -37.59032 -36.86439 -36.26389 -34.65950 -33.85422 -32.45042 -31.81714 -29.04122 -27.50560 -24.79985 -23.84526 -21.42648 -20.76897 -19.74880 -19.18784 -18.70406 -17.73661 -17.14511 -16.81566 -16.05898 -15.86017 -15.45065 -15.28952 -15.12704 -14.81163 -14.39852 -14.21714 -13.86792 -13.74068 -13.35721 -13.15982 -12.55131 -12.38365 -12.29412 -12.25808 -12.20426 -12.17894 -11.98172 -11.79199 -11.39575 -11.24820 -10.96040 -10.65639 -10.65501 -10.08382 -10.00441 -9.71740 -9.08550 -8.81371 -8.32454 -6.42103 -3.94896 -0.43967 2.25457 2.47281 2.81025 2.98587 3.03812 3.12066 3.42618 3.52697 3.57524 4.01002 4.02442 4.09548 4.21284 4.31901 4.47602 4.48386 4.63951 4.81699 4.96662 5.08051 5.12273 5.32493 5.35222 5.48985 5.59029 5.60338 5.70346 5.73413 5.78019 6.33774 7.39360 7.47993 7.95865 8.07732 8.42758 8.79853 9.27670 9.60359 10.69953 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.003189 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.529871 B = 8779.076951 C = 8961.103132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.577 6.577 12 C 0.102 3.898 13 N -0.697 5.697 14 C 0.527 3.473 15 O -0.519 6.519 16 C -0.599 4.599 17 H 0.157 0.843 18 C -0.093 4.093 19 C -0.141 4.141 20 C -0.113 4.113 21 C -0.602 4.602 22 S 2.423 3.577 23 O -0.923 6.923 24 O -0.914 6.914 25 H 0.276 0.724 26 H 0.375 0.625 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.416 0.584 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.143 -14.041 1.710 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.212 5.212 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.025 4.025 13 N -0.351 5.351 14 C 0.309 3.691 15 O -0.395 6.395 16 C -0.708 4.708 17 H 0.174 0.826 18 C -0.131 4.131 19 C -0.178 4.178 20 C -0.151 4.151 21 C -0.732 4.732 22 S 2.601 3.399 23 O -0.920 6.920 24 O -0.911 6.911 25 H 0.087 0.913 26 H 0.208 0.792 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.255 0.745 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.155 0.845 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 20.868 -13.469 0.933 24.855 hybrid contribution 0.117 0.529 0.781 0.951 sum 20.985 -12.940 1.714 24.713 Atomic orbital electron populations 1.69611 1.05724 1.27868 1.47989 1.25065 0.95534 0.98185 0.97064 0.86669 0.79874 0.83727 0.79206 1.19316 1.19960 1.19243 1.19451 0.78883 0.96861 1.48724 0.86009 1.42106 1.07740 1.06078 1.65264 1.19547 0.87848 0.85008 0.85352 1.90552 1.69053 1.30832 1.55638 1.21102 0.94280 0.83286 1.03849 1.45710 1.06412 1.10012 1.73016 1.19088 0.82845 0.88532 0.78590 1.90757 1.55107 1.44622 1.49055 1.30451 1.08738 1.04856 1.26765 0.82560 1.21228 0.92667 0.97602 1.01631 1.21745 1.02766 0.95578 0.97711 1.21338 0.95870 1.04469 0.93453 1.30271 1.10585 1.22676 1.09692 1.08292 0.76335 0.78566 0.76682 1.93658 1.43913 1.85978 1.68452 1.93621 1.60337 1.63127 1.74051 0.91338 0.79194 0.89171 0.89169 0.74461 0.88524 0.89067 0.89164 0.90433 0.89242 0.89432 0.84508 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.96 13.96 55.50 0.77 -24.18 16 2 C 0.05 1.23 5.50 -17.47 -0.10 1.14 16 3 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.57 -13.40 5.09 -10.96 -0.06 -13.46 16 10 C 0.44 9.67 7.85 -10.99 -0.09 9.59 16 11 O -0.58 -14.65 15.24 5.55 0.08 -14.57 16 12 C 0.10 1.79 6.15 -5.19 -0.03 1.75 16 13 N -0.70 -11.25 5.53 -61.47 -0.34 -11.59 16 14 C 0.53 7.85 6.84 -10.99 -0.08 7.78 16 15 O -0.52 -9.12 16.35 5.56 0.09 -9.02 16 16 C -0.60 -5.99 2.80 -27.86 -0.08 -6.06 16 17 H 0.16 1.02 8.11 -51.93 -0.42 0.60 16 18 C -0.09 -0.73 4.62 -26.92 -0.12 -0.85 16 19 C -0.14 -0.64 5.63 -27.15 -0.15 -0.79 16 20 C -0.11 -0.52 5.73 -26.92 -0.15 -0.68 16 21 C -0.60 -3.31 6.35 37.18 0.24 -3.07 16 22 S 2.42 26.10 4.67 -107.50 -0.50 25.59 16 23 O -0.92 -13.34 18.10 -57.81 -1.05 -14.38 16 24 O -0.91 -13.05 17.92 -57.81 -1.04 -14.09 16 25 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 27 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.42 6.56 7.41 -40.82 -0.30 6.26 16 30 H 0.10 0.86 7.84 -51.93 -0.41 0.46 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.44 8.01 -51.93 -0.42 0.03 16 36 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -37.73 324.87 -7.28 -45.01 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.72 Total: 11.42 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.71 Total: 0.06 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.38 Total: -49.23 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -1.91 Total: -52.06 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Atomic # 16 Polarization: 26.10 SS G_CDS: -0.50 Total: 25.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.73 -7.28 -45.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323289200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.848 kcal (2) G-P(sol) polarization free energy of solvation -37.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds