Wall clock time and date at job start Fri Apr 10 2020 14:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99364 * 3 2 1 6 6 H 1.48500 * 109.47260 * 149.99660 * 3 2 1 7 7 C 1.38947 * 120.00633 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00016 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00722 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00349 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00033 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99986 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47201 * 180.02562 * 12 10 9 14 14 C 1.34770 * 119.99885 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00427 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99677 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.54965 * 335.19320 * 16 14 13 18 18 C 1.53036 * 109.54728 * 215.00124 * 16 14 13 19 19 C 1.52587 * 109.98462 * 176.40031 * 18 16 14 20 20 C 1.52589 * 110.64209 * 69.98781 * 19 18 16 21 21 C 1.53040 * 109.98567 * 290.01171 * 20 19 18 22 22 S 1.81667 * 108.99671 * 63.64839 * 21 20 19 23 23 O 1.42097 * 108.66324 * 191.36965 * 22 21 20 24 24 O 1.42101 * 108.66368 * 60.02918 * 22 21 20 25 25 H 0.96995 * 120.00488 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99662 * 359.97438 * 9 7 2 27 27 H 1.08991 * 109.47330 * 59.99830 * 12 10 9 28 28 H 1.09007 * 109.47136 * 299.99880 * 12 10 9 29 29 H 0.97009 * 119.99515 * 359.97438 * 13 12 10 30 30 H 1.09002 * 109.38667 * 296.55960 * 18 16 14 31 31 H 1.09005 * 109.38772 * 56.24512 * 18 16 14 32 32 H 1.09006 * 109.24309 * 190.28969 * 19 18 16 33 33 H 1.09000 * 109.24367 * 309.68345 * 19 18 16 34 34 H 1.09000 * 109.38627 * 169.85649 * 20 19 18 35 35 H 1.08997 * 109.38495 * 50.17479 * 20 19 18 36 36 H 1.08997 * 109.54734 * 303.79228 * 21 20 19 37 37 H 1.08999 * 109.54901 * 183.50656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3704 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3703 0.0033 13 7 6.0493 -3.7515 0.0037 14 6 7.3743 -3.9977 0.0042 15 8 8.1624 -3.0758 0.0048 16 6 7.8767 -5.4185 0.0051 17 1 7.1191 -6.0730 0.4363 18 6 9.1609 -5.5070 0.8328 19 6 9.6297 -6.9567 0.9147 20 6 10.1423 -7.4338 -0.4410 21 6 8.9755 -7.5758 -1.4210 22 16 8.2334 -5.9408 -1.6979 23 8 7.0033 -6.1109 -2.3885 24 8 9.2237 -5.0779 -2.2401 25 1 -0.4850 0.8400 -0.0004 26 1 3.8649 -0.3632 0.0007 27 1 5.9235 -1.8561 0.8932 28 1 5.9249 -1.8568 -0.8867 29 1 5.4189 -4.4888 0.0035 30 1 9.9365 -4.9020 0.3630 31 1 8.9702 -5.1311 1.8380 32 1 10.4312 -7.0342 1.6494 33 1 8.7963 -7.5867 1.2256 34 1 10.6347 -8.3990 -0.3224 35 1 10.8575 -6.7103 -0.8323 36 1 8.2278 -8.2496 -1.0026 37 1 9.3403 -7.9758 -2.3670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323289200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:17 Heat of formation + Delta-G solvation = -176.715148 kcal Electronic energy + Delta-G solvation = -23058.701319 eV Core-core repulsion = 19348.008126 eV Total energy + Delta-G solvation = -3710.693194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33892 -40.19659 -38.42117 -37.54729 -37.17821 -36.37263 -35.50020 -33.88285 -33.13019 -30.07987 -28.59949 -26.37819 -24.77912 -22.01163 -21.82965 -21.55860 -20.66829 -19.91183 -19.00308 -18.07038 -17.68288 -17.37415 -17.14135 -16.71770 -16.66998 -16.54869 -15.78682 -15.42779 -15.30364 -14.97770 -14.81421 -14.49257 -14.28321 -14.10709 -13.91406 -13.74413 -13.32215 -13.19825 -13.00167 -12.80636 -12.59722 -12.47378 -12.33094 -12.02207 -11.78909 -11.61761 -11.59646 -11.52228 -10.92241 -10.71998 -10.42127 -10.33227 -8.48268 -6.10711 -1.21086 1.26806 1.29162 1.32420 1.41816 1.55616 1.69296 1.74049 2.18172 2.60031 2.78074 2.86397 3.07517 3.24101 3.48280 3.70777 3.76996 3.91716 3.99308 4.09446 4.28734 4.29941 4.32733 4.56496 4.70063 4.88364 4.98357 5.02389 5.18033 5.21407 5.38768 5.44632 5.84390 6.21004 6.44524 6.74226 6.83954 7.24472 7.72831 8.68131 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.003189 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.529871 B = 8779.076951 C = 8961.103132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.232 1.232 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.612 6.612 12 C 0.110 3.890 13 N -0.705 5.705 14 C 0.521 3.479 15 O -0.550 6.550 16 C -0.593 4.593 17 H 0.192 0.808 18 C -0.094 4.094 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.562 4.562 22 S 2.398 3.602 23 O -0.975 6.975 24 O -0.965 6.965 25 H 0.282 0.718 26 H 0.392 0.608 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.417 0.583 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.173 0.827 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.191 -15.127 2.822 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.498 6.498 12 C -0.017 4.017 13 N -0.360 5.360 14 C 0.306 3.694 15 O -0.428 6.428 16 C -0.702 4.702 17 H 0.210 0.790 18 C -0.133 4.133 19 C -0.174 4.174 20 C -0.158 4.158 21 C -0.697 4.697 22 S 2.583 3.417 23 O -0.972 6.972 24 O -0.962 6.962 25 H 0.092 0.908 26 H 0.228 0.772 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.097 0.903 36 H 0.191 0.809 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 23.921 -14.527 2.029 28.060 hybrid contribution -0.809 0.674 0.458 1.148 sum 23.112 -13.853 2.487 27.060 Atomic orbital electron populations 1.69769 1.08025 1.29555 1.49004 1.26063 0.96435 1.02582 0.95579 0.85448 0.79609 0.77022 0.80062 1.18225 1.19582 1.15554 1.19044 0.80863 0.95377 1.50964 0.91778 1.41910 1.06216 1.07350 1.66059 1.20409 0.89856 0.84027 0.82694 1.90534 1.70644 1.32250 1.56404 1.21034 0.90119 0.84915 1.05681 1.45832 1.07211 1.09354 1.73608 1.19871 0.81855 0.90521 0.77152 1.90732 1.55569 1.46276 1.50271 1.30521 1.10793 1.01918 1.27000 0.79040 1.21341 0.90905 1.00246 1.00788 1.21800 1.04311 0.93042 0.98254 1.21519 0.95266 1.06058 0.92931 1.30041 1.11306 1.16642 1.11705 1.08697 0.75355 0.80975 0.76658 1.93595 1.46210 1.87212 1.70148 1.93556 1.60783 1.66429 1.75450 0.90818 0.77154 0.86705 0.87796 0.74384 0.90407 0.88920 0.87220 0.87977 0.85779 0.90277 0.80907 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 13.96 21.66 0.30 -54.32 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.96 38.50 27.74 68.60 1.90 40.40 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 7 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 8 H 0.06 4.34 7.39 -2.91 -0.02 4.32 16 9 N -0.58 -26.97 5.09 -306.99 -1.56 -28.54 16 10 C 0.44 19.85 7.85 87.66 0.69 20.53 16 11 O -0.61 -32.25 15.24 -3.07 -0.05 -32.30 16 12 C 0.11 3.76 6.15 85.63 0.53 4.28 16 13 N -0.71 -22.60 5.53 -466.78 -2.58 -25.18 16 14 C 0.52 15.32 6.84 87.66 0.60 15.92 16 15 O -0.55 -19.32 16.35 -3.03 -0.05 -19.37 16 16 C -0.59 -10.98 2.80 29.86 0.08 -10.90 16 17 H 0.19 2.00 8.11 -2.39 -0.02 1.98 16 18 C -0.09 -1.27 4.62 30.47 0.14 -1.13 16 19 C -0.14 -0.63 5.63 30.32 0.17 -0.46 16 20 C -0.12 -0.56 5.73 30.47 0.17 -0.38 16 21 C -0.56 -3.84 6.35 72.00 0.46 -3.39 16 22 S 2.40 49.99 4.67 -56.49 -0.26 49.72 16 23 O -0.97 -28.62 18.10 -127.39 -2.31 -30.92 16 24 O -0.97 -28.33 17.92 -127.39 -2.28 -30.62 16 25 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.39 15.42 5.76 -92.71 -0.53 14.88 16 27 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 29 H 0.42 13.24 7.41 -92.70 -0.69 12.55 16 30 H 0.08 1.35 7.84 -2.39 -0.02 1.33 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.10 0.04 8.09 -2.39 -0.02 0.02 16 34 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.08 0.57 8.01 -2.39 -0.02 0.55 16 36 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -89.85 324.87 -2.89 -92.74 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.16 Total: 32.09 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.16 Total: 6.28 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.84 Total: -108.03 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -4.69 Total: -113.21 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Atomic # 16 Polarization: 49.99 SS G_CDS: -0.26 Total: 49.72 kcal Total: -89.85 -2.89 -92.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323289200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.974 kcal (2) G-P(sol) polarization free energy of solvation -89.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds