Wall clock time and date at job start Fri Apr 10 2020 14:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48499 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46879 * 299.99524 * 3 2 1 6 6 H 1.48500 * 109.47134 * 60.00013 * 3 2 1 7 7 C 1.37878 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99888 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.91969 * 303.90111 * 9 7 2 11 11 C 1.55162 * 111.00159 * 67.80618 * 9 7 2 12 12 C 1.54325 * 102.94001 * 153.57858 * 11 9 7 13 13 N 1.47295 * 107.30469 * 337.81176 * 12 11 9 14 14 C 1.34781 * 125.78965 * 178.92754 * 13 12 11 15 15 O 1.21285 * 119.99586 * 174.29761 * 14 13 12 16 16 C 1.50700 * 119.99951 * 354.30232 * 14 13 12 17 17 S 1.81406 * 115.54743 * 286.06994 * 16 14 13 18 18 N 1.65597 * 104.44920 * 295.14937 * 17 16 14 19 19 O 1.42104 * 110.53969 * 46.77220 * 17 16 14 20 20 O 1.42094 * 110.54035 * 183.52386 * 17 16 14 21 21 C 1.52998 * 117.49569 * 140.37013 * 16 14 13 22 22 C 1.52998 * 117.50234 * 71.74551 * 16 14 13 23 23 C 1.47418 * 108.55843 * 358.93010 * 13 12 11 24 24 H 0.97002 * 119.99488 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99735 * 56.09310 * 10 9 7 26 26 H 1.08997 * 110.71308 * 271.93425 * 11 9 7 27 27 H 1.08993 * 110.72064 * 35.03267 * 11 9 7 28 28 H 1.08996 * 109.88451 * 97.22149 * 12 11 9 29 29 H 1.08998 * 109.87817 * 218.23652 * 12 11 9 30 30 H 0.96999 * 119.99788 * 150.14571 * 18 17 16 31 31 H 0.97005 * 120.00254 * 330.14422 * 18 17 16 32 32 H 1.08997 * 117.50305 * 359.97438 * 21 16 14 33 33 H 1.09005 * 117.49494 * 145.02168 * 21 16 14 34 34 H 1.09001 * 117.49569 * 214.97993 * 22 16 14 35 35 H 1.08997 * 117.49524 * 359.97314 * 22 16 14 36 36 H 1.08999 * 110.36859 * 265.25592 * 23 13 12 37 37 H 1.09000 * 110.36499 * 143.04846 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.3516 -2.5680 1.1100 11 6 0.4986 -2.7080 -1.3391 12 6 0.3969 -4.2445 -1.4426 13 7 1.4601 -4.8119 -0.5957 14 6 1.6950 -6.1245 -0.3992 15 8 2.6642 -6.4782 0.2383 16 6 0.7534 -7.1524 -0.9717 17 16 -0.8425 -7.3098 -0.1236 18 7 -0.4546 -7.8663 1.3870 19 8 -1.4113 -6.0287 0.1102 20 8 -1.6105 -8.3588 -0.6970 21 6 1.3686 -8.4229 -1.5618 22 6 0.7716 -7.3608 -2.4873 23 6 2.2258 -3.7031 0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2779 -1.8351 1.1517 26 1 -0.4932 -2.2578 -1.2988 27 1 1.0725 -2.2998 -2.1710 28 1 -0.5778 -4.5764 -1.0852 29 1 0.5382 -4.5564 -2.4774 30 1 -1.0132 -7.6376 2.1463 31 1 0.3312 -8.4210 1.5126 32 1 2.4544 -8.5151 -1.5363 33 1 0.8143 -9.3537 -1.4405 34 1 -0.1753 -7.5928 -2.9748 35 1 1.4644 -6.7541 -3.0704 36 1 3.1048 -3.4798 -0.6025 37 1 2.5208 -3.9521 1.0215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363463711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:30 Heat of formation + Delta-G solvation = -148.560929 kcal Electronic energy + Delta-G solvation = -24477.368954 eV Core-core repulsion = 20767.896619 eV Total energy + Delta-G solvation = -3709.472335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34072 -39.27677 -38.38376 -37.37818 -37.17098 -36.09214 -34.12962 -34.12230 -31.63673 -30.08907 -27.57728 -25.67713 -23.72115 -23.69632 -21.72131 -21.20761 -20.16140 -19.34291 -19.01651 -18.39314 -17.69008 -17.33559 -17.05588 -16.93132 -16.40370 -16.29475 -15.84176 -15.43287 -14.89524 -14.81102 -14.17210 -13.77853 -13.68787 -13.41646 -13.35391 -13.23312 -13.19646 -13.00220 -12.96886 -12.66442 -12.59221 -12.44973 -12.27104 -12.23736 -11.83901 -11.72396 -11.32315 -11.30299 -11.06824 -10.64135 -10.12419 -9.63479 -8.24068 -6.39762 -0.95194 1.27704 1.41768 1.45853 1.55926 1.65370 1.90005 2.16864 2.39828 2.53743 2.95028 3.01934 3.27899 3.55042 3.69017 3.81784 3.99921 4.25347 4.35140 4.39849 4.49152 4.58633 4.70566 4.75551 4.90028 4.96734 5.13009 5.17858 5.19698 5.44667 5.51862 5.78403 6.04384 6.23731 6.47414 6.64840 6.91532 7.32142 7.46788 8.82557 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.004641 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.207843 B = 6031.645616 C = 6338.203196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.033 3.967 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.559 4.559 8 H 0.060 0.940 9 C 0.233 3.767 10 O -0.593 6.593 11 C -0.130 4.130 12 C 0.082 3.918 13 N -0.596 5.596 14 C 0.576 3.424 15 O -0.566 6.566 16 C -0.699 4.699 17 S 2.670 3.330 18 N -1.238 6.238 19 O -0.977 6.977 20 O -0.964 6.964 21 C -0.078 4.078 22 C -0.098 4.098 23 C 0.125 3.875 24 H 0.272 0.728 25 H 0.380 0.620 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.427 0.573 31 H 0.426 0.574 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -15.346 -5.436 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.168 4.168 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.597 4.597 8 H 0.079 0.921 9 C 0.192 3.808 10 O -0.403 6.403 11 C -0.169 4.169 12 C -0.040 4.040 13 N -0.327 5.327 14 C 0.363 3.637 15 O -0.446 6.446 16 C -0.791 4.791 17 S 2.757 3.243 18 N -0.915 5.915 19 O -0.967 6.967 20 O -0.953 6.953 21 C -0.115 4.115 22 C -0.137 4.137 23 C 0.003 3.997 24 H 0.082 0.918 25 H 0.231 0.769 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.259 0.741 31 H 0.255 0.745 32 H 0.141 0.859 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.827 -15.767 -5.484 16.714 hybrid contribution 0.786 1.753 0.678 2.037 sum -0.042 -14.014 -4.805 14.815 Atomic orbital electron populations 1.69667 1.06893 1.28439 1.50159 1.25672 0.95785 1.02274 0.93022 0.85410 0.78833 0.79033 0.77703 1.19535 1.20102 1.20783 1.21735 0.93728 0.91396 1.52832 0.92136 1.19805 0.86400 0.90988 0.83566 1.86097 1.51111 1.52579 1.50525 1.22986 1.01710 0.92274 0.99933 1.22628 0.91475 0.95283 0.94615 1.48560 1.32868 1.04591 1.46645 1.18293 0.84873 0.80725 0.79853 1.90651 1.30578 1.80185 1.43157 1.31921 1.22524 1.10800 1.13811 1.03002 0.73750 0.73535 0.73978 1.52832 1.42150 1.69313 1.27183 1.93607 1.75779 1.43448 1.83829 1.93604 1.65125 1.57418 1.79155 1.23232 1.03699 0.89455 0.95162 1.23345 1.06280 1.00631 0.83426 1.22238 0.94647 0.85550 0.97307 0.91832 0.76866 0.91489 0.91203 0.89700 0.88909 0.74134 0.74484 0.85859 0.83308 0.83746 0.85496 0.90163 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.66 10.79 21.45 0.23 -47.43 16 2 C 0.03 1.71 5.30 84.65 0.45 2.15 16 3 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -29.26 8.25 25.60 0.21 -29.05 16 8 H 0.06 3.14 7.77 -2.91 -0.02 3.12 16 9 C 0.23 11.53 0.89 -10.15 -0.01 11.52 16 10 O -0.59 -32.13 13.18 -148.98 -1.96 -34.09 16 11 C -0.13 -5.72 5.64 31.78 0.18 -5.54 16 12 C 0.08 3.00 6.28 86.68 0.54 3.54 16 13 N -0.60 -23.09 3.34 -811.12 -2.71 -25.79 16 14 C 0.58 19.87 7.08 87.66 0.62 20.49 16 15 O -0.57 -22.30 17.22 -3.05 -0.05 -22.35 16 16 C -0.70 -16.92 1.83 -11.54 -0.02 -16.94 16 17 S 2.67 69.75 5.92 -56.49 -0.33 69.42 16 18 N -1.24 -26.36 9.36 37.02 0.35 -26.01 16 19 O -0.98 -34.69 15.40 -127.65 -1.97 -36.66 16 20 O -0.96 -26.03 17.96 -127.65 -2.29 -28.33 16 21 C -0.08 -1.21 9.77 30.59 0.30 -0.91 16 22 C -0.10 -1.60 9.40 30.59 0.29 -1.31 16 23 C 0.12 5.61 6.05 86.86 0.53 6.14 16 24 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 25 H 0.38 20.99 6.93 -74.06 -0.51 20.48 16 26 H 0.07 3.16 7.84 -2.39 -0.02 3.14 16 27 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 28 H 0.08 3.23 5.28 -2.39 -0.01 3.22 16 29 H 0.09 2.61 7.80 -2.39 -0.02 2.59 16 30 H 0.43 8.22 8.96 -96.75 -0.87 7.36 16 31 H 0.43 7.11 8.96 -96.74 -0.87 6.24 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.15 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 3.43 8.01 -2.39 -0.02 3.41 16 37 H 0.05 2.50 8.09 -2.39 -0.02 2.48 16 Total: -1.00 -71.32 323.08 -4.73 -76.05 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.11 Total: 41.98 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.09 Total: -9.89 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -2.13 Total: -99.23 kcal Atomic # 8 Polarization: -115.16 SS G_CDS: -6.27 Total: -121.44 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 69.75 SS G_CDS: -0.33 Total: 69.42 kcal Total: -71.32 -4.73 -76.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363463711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.515 kcal (2) G-P(sol) polarization free energy of solvation -71.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds