Wall clock time and date at job start Fri Apr 10 2020 14:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.36577 * 119.77205 * 89.99931 * 3 2 1 5 5 S 1.76201 * 118.46787 * 359.95865 * 4 3 2 6 6 C 1.80990 * 100.00026 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47320 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47174 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00603 * 359.97438 * 8 7 6 10 10 C 1.37885 * 120.00278 * 180.02562 * 8 7 6 11 11 N 1.31504 * 120.00445 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99381 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46971 * 90.00329 * 12 10 8 14 14 H 1.48500 * 109.46869 * 210.00250 * 12 10 8 15 15 H 1.48498 * 109.47243 * 330.00092 * 12 10 8 16 16 N 1.31022 * 123.06657 * 179.97438 * 4 3 2 17 17 C 1.34817 * 121.60598 * 0.02562 * 16 4 3 18 18 C 1.39814 * 121.60890 * 180.02562 * 17 16 4 19 19 C 1.36634 * 119.66129 * 180.02562 * 18 17 16 20 20 C 1.38901 * 120.97342 * 359.94499 * 19 18 17 21 21 C 1.36756 * 120.73230 * 0.02562 * 20 19 18 22 22 C 1.39420 * 119.51354 * 0.02562 * 21 20 19 23 23 C 1.35339 * 119.77255 * 269.72813 * 3 2 1 24 24 O 1.21728 * 121.25103 * 0.02562 * 23 3 2 25 25 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 26 26 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 29 29 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 30 30 H 1.09000 * 109.47346 * 299.99860 * 6 5 4 31 31 H 1.09002 * 109.47165 * 60.00012 * 6 5 4 32 32 H 1.09000 * 109.46829 * 300.00216 * 7 6 5 33 33 H 1.08995 * 109.46851 * 59.99590 * 7 6 5 34 34 H 0.97004 * 120.00231 * 179.97438 * 11 10 8 35 35 H 1.08005 * 120.17505 * 359.92498 * 18 17 16 36 36 H 1.07998 * 119.51288 * 179.97438 * 19 18 17 37 37 H 1.08006 * 119.63549 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.24825 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2444 2.0206 1.1855 5 16 1.9342 1.1466 2.6837 6 6 2.3854 2.4191 3.8891 7 6 2.1906 1.8725 5.3048 8 6 2.5657 2.9321 6.3084 9 1 2.9091 3.8987 5.9705 10 6 2.4715 2.6674 7.6584 11 7 2.7992 3.5920 8.5342 12 14 1.8782 0.9954 8.2430 13 1 3.0405 0.0843 8.3983 14 1 1.1878 1.1441 9.5493 15 1 0.9346 0.4286 7.2462 16 7 2.6809 3.2537 1.2608 17 6 2.9381 3.9809 0.1551 18 6 3.4044 5.2966 0.2354 19 6 3.6517 5.9975 -0.9111 20 6 3.4478 5.4220 -2.1588 21 6 2.9930 4.1371 -2.2699 22 6 2.7314 3.3990 -1.1164 23 6 2.2477 2.0130 -1.1747 24 8 2.0554 1.4555 -2.2396 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.4292 2.6995 3.7480 31 1 1.7516 3.2946 3.7477 32 1 1.1467 1.5923 5.4457 33 1 2.8240 0.9968 5.4465 34 1 2.7326 3.4059 9.4839 35 1 3.5669 5.7572 1.1987 36 1 4.0115 7.0137 -0.8463 37 1 3.6506 5.9957 -3.0511 38 1 2.8368 3.6975 -3.2439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009450823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:57 Heat of formation + Delta-G solvation = 5.549500 kcal Electronic energy + Delta-G solvation = -21768.501069 eV Core-core repulsion = 18508.853478 eV Total energy + Delta-G solvation = -3259.647591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62058 -38.76115 -37.53737 -35.07036 -33.81834 -31.78382 -31.37493 -30.65985 -30.07812 -25.77640 -25.19783 -24.97444 -22.75154 -22.05992 -21.02735 -19.04758 -18.93928 -17.59894 -17.07518 -16.30257 -16.10071 -15.57143 -15.05810 -14.70850 -14.50648 -14.23832 -14.18176 -13.99508 -13.51501 -13.46811 -13.33897 -12.84176 -12.50723 -12.23040 -12.12168 -11.90888 -11.81046 -11.47512 -11.26323 -10.76351 -10.46143 -10.27761 -10.16458 -10.13652 -9.93505 -9.79236 -9.34855 -9.28864 -8.67447 -8.64846 -7.55900 -6.16472 -4.17471 0.36044 0.73183 1.08372 2.07477 2.24507 2.55653 2.64443 3.23121 3.31478 3.32675 3.88558 4.05977 4.25216 4.33761 4.62620 4.72670 4.82255 4.85234 5.06639 5.12176 5.16384 5.23590 5.29564 5.48457 5.55754 5.80743 5.81822 5.88939 5.91686 5.95445 6.00798 6.11901 6.29418 6.43654 6.46837 6.66657 6.94862 7.05444 7.55404 7.55878 7.68585 8.36480 8.86571 9.42778 10.96098 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.004025 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.590299 B = 6955.346675 C = 8462.329936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 N -0.529 5.529 4 C 0.377 3.623 5 S -0.036 6.036 6 C -0.068 4.068 7 C -0.001 4.001 8 C -0.520 4.520 9 H 0.078 0.922 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.877 3.123 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.264 1.264 16 N -0.529 5.529 17 C 0.180 3.820 18 C -0.115 4.115 19 C -0.071 4.071 20 C -0.151 4.151 21 C -0.039 4.039 22 C -0.212 4.212 23 C 0.555 3.445 24 O -0.517 6.517 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -2.389 -19.306 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.036 4.036 3 N -0.253 5.253 4 C 0.004 3.996 5 S 0.201 5.799 6 C -0.216 4.216 7 C -0.040 4.040 8 C -0.559 4.559 9 H 0.096 0.904 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.703 3.297 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.189 1.189 16 N -0.255 5.255 17 C 0.065 3.935 18 C -0.135 4.135 19 C -0.090 4.090 20 C -0.170 4.170 21 C -0.058 4.058 22 C -0.220 4.220 23 C 0.348 3.652 24 O -0.393 6.393 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.703 -3.399 -18.904 19.283 hybrid contribution 0.092 0.157 -0.505 0.537 sum -1.611 -3.242 -19.409 19.744 Atomic orbital electron populations 1.22120 0.93721 1.03514 1.03251 1.22027 0.96435 0.79935 1.05222 1.46546 1.57461 1.15726 1.05581 1.25220 0.91246 0.91946 0.91144 1.85898 1.79761 1.22250 0.91980 1.23900 1.05826 0.97055 0.94815 1.19473 0.97709 0.97702 0.89164 1.20874 1.45551 0.99941 0.89584 0.90419 1.24953 0.94546 0.96869 0.96606 1.69882 1.47989 1.33673 1.01846 0.86827 0.79625 0.84702 0.78507 1.20038 1.21109 1.18876 1.69056 1.23698 1.03496 1.29245 1.18747 0.93528 0.94173 0.87056 1.20709 1.00887 0.92054 0.99853 1.21031 0.96092 0.99877 0.91995 1.20868 1.02793 0.95370 0.97986 1.20704 0.94198 0.93574 0.97334 1.20535 1.11230 0.94557 0.95673 1.18375 0.77480 0.86548 0.82831 1.90825 1.52341 1.68264 1.27871 0.91182 0.92043 0.90209 0.88102 0.88080 0.88666 0.88614 0.95491 0.95950 0.92425 0.84099 0.85036 0.85319 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.09 0.96 5.61 -4.04 -0.02 0.94 16 3 N -0.53 -7.53 2.62 -117.40 -0.31 -7.84 16 4 C 0.38 5.80 7.78 -88.52 -0.69 5.11 16 5 S -0.04 -0.55 19.81 -107.50 -2.13 -2.68 16 6 C -0.07 -1.26 4.72 37.16 0.18 -1.09 16 7 C 0.00 -0.02 4.04 -27.89 -0.11 -0.13 16 8 C -0.52 -13.93 9.66 -34.44 -0.33 -14.26 16 9 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 12 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 16 N -0.53 -8.69 8.95 -10.91 -0.10 -8.79 16 17 C 0.18 2.74 6.62 -84.78 -0.56 2.18 16 18 C -0.11 -1.47 9.99 -39.57 -0.40 -1.86 16 19 C -0.07 -0.71 9.95 -39.92 -0.40 -1.11 16 20 C -0.15 -1.50 9.97 -39.87 -0.40 -1.90 16 21 C -0.04 -0.47 9.63 -39.68 -0.38 -0.85 16 22 C -0.21 -3.13 5.89 -104.76 -0.62 -3.75 16 23 C 0.55 8.58 7.66 -12.49 -0.10 8.48 16 24 O -0.52 -8.60 16.31 5.16 0.08 -8.51 16 25 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 1.08 7.46 -51.93 -0.39 0.70 16 29 H 0.10 1.03 6.48 -51.93 -0.34 0.69 16 30 H 0.09 1.81 8.10 -51.92 -0.42 1.39 16 31 H 0.10 1.82 8.09 -51.91 -0.42 1.40 16 32 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 33 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.13 1.49 7.82 -52.49 -0.41 1.08 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -30.81 334.64 -9.71 -40.52 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.86 Total: -0.23 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.55 Total: -7.63 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.37 Total: -42.33 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.13 Total: -2.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.81 -9.71 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009450823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.069 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds