Wall clock time and date at job start Fri Apr 10 2020 14:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.36577 * 119.77205 * 89.99931 * 3 2 1 5 5 S 1.76201 * 118.46787 * 359.95865 * 4 3 2 6 6 C 1.80990 * 100.00026 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47320 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47174 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00603 * 359.97438 * 8 7 6 10 10 C 1.37885 * 120.00278 * 180.02562 * 8 7 6 11 11 N 1.31504 * 120.00445 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99381 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46971 * 90.00329 * 12 10 8 14 14 H 1.48500 * 109.46869 * 210.00250 * 12 10 8 15 15 H 1.48498 * 109.47243 * 330.00092 * 12 10 8 16 16 N 1.31022 * 123.06657 * 179.97438 * 4 3 2 17 17 C 1.34817 * 121.60598 * 0.02562 * 16 4 3 18 18 C 1.39814 * 121.60890 * 180.02562 * 17 16 4 19 19 C 1.36634 * 119.66129 * 180.02562 * 18 17 16 20 20 C 1.38901 * 120.97342 * 359.94499 * 19 18 17 21 21 C 1.36756 * 120.73230 * 0.02562 * 20 19 18 22 22 C 1.39420 * 119.51354 * 0.02562 * 21 20 19 23 23 C 1.35339 * 119.77255 * 269.72813 * 3 2 1 24 24 O 1.21728 * 121.25103 * 0.02562 * 23 3 2 25 25 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 26 26 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 29 29 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 30 30 H 1.09000 * 109.47346 * 299.99860 * 6 5 4 31 31 H 1.09002 * 109.47165 * 60.00012 * 6 5 4 32 32 H 1.09000 * 109.46829 * 300.00216 * 7 6 5 33 33 H 1.08995 * 109.46851 * 59.99590 * 7 6 5 34 34 H 0.97004 * 120.00231 * 179.97438 * 11 10 8 35 35 H 1.08005 * 120.17505 * 359.92498 * 18 17 16 36 36 H 1.07998 * 119.51288 * 179.97438 * 19 18 17 37 37 H 1.08006 * 119.63549 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.24825 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2444 2.0206 1.1855 5 16 1.9342 1.1466 2.6837 6 6 2.3854 2.4191 3.8891 7 6 2.1906 1.8725 5.3048 8 6 2.5657 2.9321 6.3084 9 1 2.9091 3.8987 5.9705 10 6 2.4715 2.6674 7.6584 11 7 2.7992 3.5920 8.5342 12 14 1.8782 0.9954 8.2430 13 1 3.0405 0.0843 8.3983 14 1 1.1878 1.1441 9.5493 15 1 0.9346 0.4286 7.2462 16 7 2.6809 3.2537 1.2608 17 6 2.9381 3.9809 0.1551 18 6 3.4044 5.2966 0.2354 19 6 3.6517 5.9975 -0.9111 20 6 3.4478 5.4220 -2.1588 21 6 2.9930 4.1371 -2.2699 22 6 2.7314 3.3990 -1.1164 23 6 2.2477 2.0130 -1.1747 24 8 2.0554 1.4555 -2.2396 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.4292 2.6995 3.7480 31 1 1.7516 3.2946 3.7477 32 1 1.1467 1.5923 5.4457 33 1 2.8240 0.9968 5.4465 34 1 2.7326 3.4059 9.4839 35 1 3.5669 5.7572 1.1987 36 1 4.0115 7.0137 -0.8463 37 1 3.6506 5.9957 -3.0511 38 1 2.8368 3.6975 -3.2439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009450823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:57 Heat of formation + Delta-G solvation = -11.071401 kcal Electronic energy + Delta-G solvation = -21769.221806 eV Core-core repulsion = 18508.853478 eV Total energy + Delta-G solvation = -3260.368328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.70604 -39.76453 -38.66530 -36.15080 -35.66895 -33.29801 -32.75505 -31.58859 -31.12754 -27.60156 -26.25142 -26.04098 -23.70967 -23.17156 -22.67403 -20.17523 -19.99415 -19.11023 -18.64625 -17.41114 -17.21557 -16.59352 -16.39480 -16.07815 -15.76174 -15.63451 -15.26186 -14.98113 -14.82880 -14.76307 -14.61119 -14.40337 -13.73861 -13.34457 -13.18307 -13.02403 -12.94489 -12.71437 -12.39770 -12.24385 -12.15348 -11.90080 -11.69037 -11.39427 -11.25487 -11.13979 -11.05090 -10.76661 -10.25757 -9.77822 -8.69512 -8.28335 -6.34733 -0.69894 -0.27804 -0.14105 0.95202 0.98857 1.39458 1.40705 1.42216 1.53106 1.63282 2.37744 2.87090 2.99964 3.06961 3.21447 3.66004 3.80696 3.99842 4.02043 4.21103 4.22773 4.25637 4.26383 4.31276 4.39808 4.66724 4.68782 4.76781 4.90262 5.00285 5.09555 5.12936 5.14465 5.23912 5.30109 5.38962 5.45124 5.56427 5.77513 6.24201 6.42095 6.55823 6.72211 7.29353 8.87876 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.004025 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.590299 B = 6955.346675 C = 8462.329936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 N -0.527 5.527 4 C 0.362 3.638 5 S 0.019 5.981 6 C -0.071 4.071 7 C 0.004 3.996 8 C -0.529 4.529 9 H 0.037 0.963 10 C 0.011 3.989 11 N -0.947 5.947 12 Si 0.945 3.055 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.240 1.240 16 N -0.549 5.549 17 C 0.149 3.851 18 C -0.129 4.129 19 C -0.057 4.057 20 C -0.132 4.132 21 C -0.050 4.050 22 C -0.231 4.231 23 C 0.548 3.452 24 O -0.537 6.537 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.139 0.861 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 -3.446 -21.045 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.042 4.042 3 N -0.251 5.251 4 C -0.012 4.012 5 S 0.256 5.744 6 C -0.219 4.219 7 C -0.036 4.036 8 C -0.569 4.569 9 H 0.055 0.945 10 C -0.187 4.187 11 N -0.587 5.587 12 Si 0.768 3.232 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.163 1.163 16 N -0.275 5.275 17 C 0.035 3.965 18 C -0.150 4.150 19 C -0.076 4.076 20 C -0.151 4.151 21 C -0.069 4.069 22 C -0.238 4.238 23 C 0.341 3.659 24 O -0.415 6.415 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.091 -4.452 -20.663 21.240 hybrid contribution 0.282 0.668 -0.130 0.736 sum -1.809 -3.785 -20.793 21.212 Atomic orbital electron populations 1.22106 0.92642 1.05053 1.02243 1.22294 0.97335 0.78592 1.06007 1.46604 1.57045 1.16568 1.04892 1.25214 0.92219 0.92130 0.91595 1.85441 1.79746 1.19177 0.90080 1.23510 1.05125 0.98265 0.95012 1.19314 0.98018 0.96427 0.89796 1.21204 1.44803 0.99769 0.91099 0.94505 1.25937 0.94746 1.01265 0.96750 1.70045 1.50005 1.36376 1.02317 0.85730 0.79779 0.79404 0.78275 1.18957 1.21095 1.16304 1.68985 1.23757 1.04192 1.30574 1.19020 0.95338 0.95200 0.86969 1.20928 1.01375 0.91561 1.01090 1.21472 0.94037 1.01121 0.91000 1.21343 0.99941 0.94425 0.99373 1.20968 0.94541 0.94535 0.96877 1.20728 1.12019 0.94634 0.96440 1.18591 0.77385 0.87014 0.82870 1.90798 1.53555 1.68805 1.28338 0.91818 0.93326 0.87389 0.87597 0.86879 0.89786 0.89769 0.94644 0.94812 0.92323 0.84287 0.81309 0.81369 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.24 71.98 0.74 -2.27 16 2 C 0.08 1.67 5.61 86.38 0.48 2.15 16 3 N -0.53 -14.85 2.62 -643.24 -1.69 -16.53 16 4 C 0.36 11.10 7.78 179.61 1.40 12.49 16 5 S 0.02 0.54 19.81 -56.49 -1.12 -0.58 16 6 C -0.07 -2.65 4.72 71.98 0.34 -2.31 16 7 C 0.00 0.17 4.04 29.85 0.12 0.29 16 8 C -0.53 -29.15 9.66 25.60 0.25 -28.90 16 9 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 10 C 0.01 0.61 5.47 84.66 0.46 1.07 16 11 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 12 Si 0.95 41.71 27.47 68.60 1.88 43.59 16 13 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 14 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 16 N -0.55 -18.40 8.95 -188.41 -1.69 -20.09 16 17 C 0.15 4.55 6.62 39.83 0.26 4.82 16 18 C -0.13 -3.22 9.99 22.28 0.22 -3.00 16 19 C -0.06 -1.00 9.95 22.05 0.22 -0.78 16 20 C -0.13 -2.19 9.97 22.08 0.22 -1.97 16 21 C -0.05 -1.13 9.63 22.21 0.21 -0.92 16 22 C -0.23 -6.75 5.89 -19.95 -0.12 -6.87 16 23 C 0.55 16.93 7.66 86.43 0.66 17.59 16 24 O -0.54 -17.79 16.31 -4.44 -0.07 -17.86 16 25 H 0.06 1.26 8.06 -2.39 -0.02 1.25 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.11 2.16 7.46 -2.39 -0.02 2.14 16 29 H 0.11 2.08 6.48 -2.38 -0.02 2.07 16 30 H 0.08 3.30 8.10 -2.40 -0.02 3.28 16 31 H 0.08 3.31 8.09 -2.39 -0.02 3.29 16 32 H 0.04 1.48 7.20 -2.39 -0.02 1.47 16 33 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.14 2.93 7.82 -2.91 -0.02 2.91 16 Total: -1.00 -69.49 334.64 4.10 -65.39 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.01 Total: 12.12 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.47 Total: -8.61 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.07 Total: -94.05 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.07 Total: -17.86 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.59 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.12 Total: -0.58 kcal Total: -69.49 4.10 -65.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009450823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.321 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds