Wall clock time and date at job start Fri Apr 10 2020 14:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 S 1.81394 * 109.47528 * 120.00387 * 2 1 3 5 5 C 1.76197 * 103.00334 * 68.37975 * 4 2 1 6 6 C 1.39030 * 120.18299 * 6.13167 * 5 4 2 7 7 C 1.37924 * 120.06220 * 180.02562 * 6 5 4 8 8 C 1.38671 * 120.44586 * 359.97052 * 7 6 5 9 9 C 1.37722 * 120.37622 * 0.02562 * 8 7 6 10 10 C 1.39798 * 119.92465 * 0.02562 * 9 8 7 11 11 C 1.47283 * 120.21760 * 179.97438 * 10 9 8 12 12 O 1.21652 * 119.99818 * 225.68672 * 11 10 9 13 13 N 1.34775 * 119.99868 * 45.68602 * 11 10 9 14 14 C 1.36906 * 119.99937 * 6.57512 * 13 11 10 15 15 H 1.07996 * 120.00287 * 20.17586 * 14 13 11 16 16 C 1.39020 * 119.99653 * 200.18432 * 14 13 11 17 17 N 1.31390 * 120.00111 * 16.63083 * 16 14 13 18 18 Si 1.86803 * 119.99617 * 196.64022 * 16 14 13 19 19 H 1.48492 * 109.47203 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47090 * 119.99560 * 18 16 14 21 21 H 1.48504 * 109.46454 * 239.99443 * 18 16 14 22 22 C 1.46504 * 119.99641 * 186.57031 * 13 11 10 23 23 C 1.47203 * 109.46615 * 86.97486 * 22 13 11 24 24 N 8.64859 * 95.68948 * 124.07149 * 2 1 3 25 25 H 1.08994 * 109.47517 * 65.48322 * 1 2 3 26 26 H 1.09007 * 109.46893 * 185.48269 * 1 2 3 27 27 H 1.09001 * 109.47267 * 305.47962 * 1 2 3 28 28 H 1.09007 * 109.46896 * 240.00449 * 2 1 3 29 29 H 1.09000 * 109.47227 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46911 * 300.00445 * 3 2 1 31 31 H 1.09002 * 109.47137 * 60.00033 * 3 2 1 32 32 H 1.07995 * 119.96944 * 359.97438 * 6 5 4 33 33 H 1.07993 * 119.77756 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.81011 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.03137 * 179.72113 * 9 8 7 36 36 H 0.96993 * 119.99612 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.46775 * 206.96871 * 22 13 11 38 38 H 1.08991 * 109.47599 * 326.97500 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.6705 -2.5297 1.1892 6 6 1.1173 -2.8991 -0.0316 7 6 0.7544 -4.2105 -0.2572 8 6 0.9376 -5.1696 0.7275 9 6 1.4840 -4.8238 1.9434 10 6 1.8565 -3.4989 2.1892 11 6 2.4409 -3.1218 3.4874 12 8 2.0496 -2.1247 4.0640 13 7 3.4093 -3.8816 4.0366 14 6 3.9442 -4.9250 3.3299 15 1 3.8490 -4.9540 2.2545 16 6 4.6098 -5.9473 3.9966 17 7 4.4536 -6.0972 5.2926 18 14 5.7264 -7.1077 3.0500 19 1 5.7309 -6.7289 1.6142 20 1 7.1065 -7.0175 3.5905 21 1 5.2288 -8.4996 3.1928 22 6 3.8894 -3.5907 5.3898 23 6 3.0406 -4.2855 6.3715 24 7 2.3874 -4.8213 7.1287 25 1 -0.3634 0.4264 -0.9349 26 1 -0.3633 -1.0230 0.0982 27 1 -0.3634 0.5965 0.8368 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.9709 -2.1584 -0.8038 33 1 0.3247 -4.4923 -1.2070 34 1 0.6501 -6.1935 0.5397 35 1 1.6200 -5.5743 2.7080 36 1 4.9183 -6.8102 5.7578 37 1 4.9187 -3.9344 5.4917 38 1 3.8458 -2.5163 5.5678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012865241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:22 Heat of formation + Delta-G solvation = 28.722337 kcal Electronic energy + Delta-G solvation = -22496.017335 eV Core-core repulsion = 19237.374593 eV Total energy + Delta-G solvation = -3258.642742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.46437 -37.74083 -35.58260 -34.83300 -34.40016 -31.75354 -30.82720 -30.67350 -27.50211 -27.24307 -25.06956 -23.07769 -22.28669 -21.64712 -19.56977 -18.31620 -16.97634 -16.66853 -16.15557 -15.83907 -15.06985 -14.70003 -14.53378 -14.48168 -14.14036 -13.62734 -13.34665 -13.10244 -12.78191 -12.64595 -12.42585 -12.29693 -12.09767 -11.92155 -11.49546 -11.36359 -11.33378 -11.30278 -11.21679 -11.17403 -10.67535 -10.55539 -10.49669 -10.23849 -9.70480 -9.43164 -9.31301 -8.70954 -8.37177 -8.11773 -6.91652 -6.60327 -4.15291 1.44763 1.69321 1.87039 2.81112 3.01457 3.13948 3.17831 3.54117 3.79010 4.04112 4.20704 4.27683 4.74185 4.77648 4.84114 4.87285 5.12770 5.21670 5.35836 5.46298 5.50100 5.60047 5.64439 5.70471 5.77105 5.84164 5.88294 6.05460 6.11171 6.15869 6.31588 6.45139 6.58416 6.64506 6.80889 6.90401 7.23116 7.29024 7.41227 8.14309 8.84508 8.97413 9.17986 9.59066 10.43075 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.005359 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.098106 B = 5223.986145 C = 5935.430694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.129 4.129 4 S -0.057 6.057 5 C -0.056 4.056 6 C -0.151 4.151 7 C -0.098 4.098 8 C -0.142 4.142 9 C -0.049 4.049 10 C -0.071 4.071 11 C 0.499 3.501 12 O -0.573 6.573 13 N -0.430 5.430 14 C -0.336 4.336 15 H 0.107 0.893 16 C 0.039 3.961 17 N -0.866 5.866 18 Si 0.924 3.076 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.281 1.281 22 C 0.232 3.768 23 C 0.261 3.739 24 N -0.484 5.484 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.276 0.724 37 H 0.120 0.880 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 6.995 -12.628 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.237 4.237 3 C -0.188 4.188 4 S 0.189 5.811 5 C -0.171 4.171 6 C -0.175 4.175 7 C -0.118 4.118 8 C -0.163 4.163 9 C -0.069 4.069 10 C -0.080 4.080 11 C 0.288 3.712 12 O -0.458 6.458 13 N -0.148 5.148 14 C -0.463 4.463 15 H 0.124 0.876 16 C -0.166 4.166 17 N -0.503 5.503 18 Si 0.750 3.250 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.207 1.207 22 C 0.106 3.894 23 C -0.057 4.057 24 N -0.165 5.165 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.572 7.203 -10.123 12.688 hybrid contribution 0.257 -1.515 -1.884 2.431 sum -2.315 5.688 -12.007 13.487 Atomic orbital electron populations 1.22140 0.93196 1.03206 1.02266 1.23488 0.99511 1.00110 1.00638 1.21546 1.01716 0.92961 1.02566 1.86296 1.72469 0.98127 1.24213 1.21874 1.01940 0.97284 0.95969 1.20990 1.03540 0.97135 0.95839 1.20998 0.99278 0.92714 0.98809 1.21057 1.01771 0.99365 0.94073 1.21471 0.93508 0.94889 0.97021 1.19580 1.01621 0.92965 0.93860 1.17971 0.81261 0.85640 0.86322 1.90708 1.63170 1.27728 1.64200 1.43468 1.31509 1.27711 1.12156 1.19789 1.34283 0.99699 0.92525 0.87588 1.25313 0.98187 0.97381 0.95765 1.69756 1.39975 1.32238 1.08342 0.85890 0.79759 0.79485 0.79857 1.19011 1.20264 1.20667 1.18472 0.96291 0.96380 0.78298 1.28968 0.92456 0.91284 0.92979 1.80775 1.11677 1.11531 1.12468 0.92321 0.91714 0.91396 0.89537 0.91686 0.91444 0.91612 0.85984 0.86367 0.86029 0.84102 0.91277 0.86221 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.68 37.16 0.32 -1.35 16 2 C -0.11 -1.32 2.60 -26.73 -0.07 -1.39 16 3 C -0.13 -1.30 9.20 37.16 0.34 -0.96 16 4 S -0.06 -0.97 19.24 -107.50 -2.07 -3.04 16 5 C -0.06 -1.03 6.00 -38.44 -0.23 -1.26 16 6 C -0.15 -2.28 7.96 -39.40 -0.31 -2.59 16 7 C -0.10 -1.38 10.03 -39.54 -0.40 -1.77 16 8 C -0.14 -2.20 10.02 -39.61 -0.40 -2.60 16 9 C -0.05 -0.92 7.82 -39.19 -0.31 -1.23 16 10 C -0.07 -1.48 4.94 -104.79 -0.52 -2.00 16 11 C 0.50 11.67 6.70 -12.58 -0.08 11.58 16 12 O -0.57 -14.39 15.11 5.23 0.08 -14.31 16 13 N -0.43 -10.01 2.58 -119.21 -0.31 -10.32 16 14 C -0.34 -7.73 7.56 -15.00 -0.11 -7.85 16 15 H 0.11 2.41 6.20 -52.49 -0.33 2.09 16 16 C 0.04 0.90 4.98 -17.45 -0.09 0.81 16 17 N -0.87 -20.99 9.12 55.50 0.51 -20.49 16 18 Si 0.92 18.24 29.59 -169.99 -5.03 13.21 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 C 0.23 5.12 5.17 -6.83 -0.04 5.08 16 23 C 0.26 6.33 13.25 -20.81 -0.28 6.06 16 24 N -0.48 -12.45 18.53 42.10 0.78 -11.67 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.80 5.91 -51.93 -0.31 0.49 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.98 6.95 -51.92 -0.36 0.62 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.12 1.54 4.97 -52.49 -0.26 1.28 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.14 2.87 7.14 -52.49 -0.37 2.50 16 36 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.12 2.56 6.68 -51.93 -0.35 2.21 16 38 H 0.09 1.85 7.43 -51.93 -0.39 1.46 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -28.69 330.81 -7.67 -36.36 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.46 Total: 4.74 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.16 Total: 0.53 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.98 Total: -42.48 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.07 Total: -3.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.69 -7.67 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012865241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.087 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds