Wall clock time and date at job start Fri Apr 10 2020 14:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 S 1.81394 * 109.47528 * 120.00387 * 2 1 3 5 5 C 1.76197 * 103.00334 * 68.37975 * 4 2 1 6 6 C 1.39030 * 120.18299 * 6.13167 * 5 4 2 7 7 C 1.37924 * 120.06220 * 180.02562 * 6 5 4 8 8 C 1.38671 * 120.44586 * 359.97052 * 7 6 5 9 9 C 1.37722 * 120.37622 * 0.02562 * 8 7 6 10 10 C 1.39798 * 119.92465 * 0.02562 * 9 8 7 11 11 C 1.47283 * 120.21760 * 179.97438 * 10 9 8 12 12 O 1.21652 * 119.99818 * 225.68672 * 11 10 9 13 13 N 1.34775 * 119.99868 * 45.68602 * 11 10 9 14 14 C 1.36906 * 119.99937 * 6.57512 * 13 11 10 15 15 H 1.07996 * 120.00287 * 20.17586 * 14 13 11 16 16 C 1.39020 * 119.99653 * 200.18432 * 14 13 11 17 17 N 1.31390 * 120.00111 * 16.63083 * 16 14 13 18 18 Si 1.86803 * 119.99617 * 196.64022 * 16 14 13 19 19 H 1.48492 * 109.47203 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47090 * 119.99560 * 18 16 14 21 21 H 1.48504 * 109.46454 * 239.99443 * 18 16 14 22 22 C 1.46504 * 119.99641 * 186.57031 * 13 11 10 23 23 C 1.47203 * 109.46615 * 86.97486 * 22 13 11 24 24 N 8.64859 * 95.68948 * 124.07149 * 2 1 3 25 25 H 1.08994 * 109.47517 * 65.48322 * 1 2 3 26 26 H 1.09007 * 109.46893 * 185.48269 * 1 2 3 27 27 H 1.09001 * 109.47267 * 305.47962 * 1 2 3 28 28 H 1.09007 * 109.46896 * 240.00449 * 2 1 3 29 29 H 1.09000 * 109.47227 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46911 * 300.00445 * 3 2 1 31 31 H 1.09002 * 109.47137 * 60.00033 * 3 2 1 32 32 H 1.07995 * 119.96944 * 359.97438 * 6 5 4 33 33 H 1.07993 * 119.77756 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.81011 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.03137 * 179.72113 * 9 8 7 36 36 H 0.96993 * 119.99612 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.46775 * 206.96871 * 22 13 11 38 38 H 1.08991 * 109.47599 * 326.97500 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.6705 -2.5297 1.1892 6 6 1.1173 -2.8991 -0.0316 7 6 0.7544 -4.2105 -0.2572 8 6 0.9376 -5.1696 0.7275 9 6 1.4840 -4.8238 1.9434 10 6 1.8565 -3.4989 2.1892 11 6 2.4409 -3.1218 3.4874 12 8 2.0496 -2.1247 4.0640 13 7 3.4093 -3.8816 4.0366 14 6 3.9442 -4.9250 3.3299 15 1 3.8490 -4.9540 2.2545 16 6 4.6098 -5.9473 3.9966 17 7 4.4536 -6.0972 5.2926 18 14 5.7264 -7.1077 3.0500 19 1 5.7309 -6.7289 1.6142 20 1 7.1065 -7.0175 3.5905 21 1 5.2288 -8.4996 3.1928 22 6 3.8894 -3.5907 5.3898 23 6 3.0406 -4.2855 6.3715 24 7 2.3874 -4.8213 7.1287 25 1 -0.3634 0.4264 -0.9349 26 1 -0.3633 -1.0230 0.0982 27 1 -0.3634 0.5965 0.8368 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.9709 -2.1584 -0.8038 33 1 0.3247 -4.4923 -1.2070 34 1 0.6501 -6.1935 0.5397 35 1 1.6200 -5.5743 2.7080 36 1 4.9183 -6.8102 5.7578 37 1 4.9187 -3.9344 5.4917 38 1 3.8458 -2.5163 5.5678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012865241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:21 Heat of formation + Delta-G solvation = 14.283845 kcal Electronic energy + Delta-G solvation = -22496.643435 eV Core-core repulsion = 19237.374593 eV Total energy + Delta-G solvation = -3259.268842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07413 -39.20149 -37.44211 -36.31329 -35.76347 -33.54021 -32.23836 -31.94717 -29.24366 -28.08592 -26.83069 -24.45427 -23.57647 -22.70239 -21.18524 -19.98756 -18.59736 -18.00317 -17.94272 -17.02845 -16.55777 -16.22504 -16.13916 -15.61943 -15.51967 -14.90868 -14.65868 -14.57400 -14.54201 -14.07913 -13.92693 -13.50319 -13.38371 -13.21647 -13.11912 -13.04809 -12.90049 -12.54246 -12.42536 -12.24090 -12.23021 -12.18015 -11.97074 -11.73167 -11.25046 -10.87912 -10.65860 -10.29720 -9.93563 -9.74591 -8.38250 -8.23586 -5.97904 0.09830 0.40460 0.68003 1.42992 1.51215 1.62487 1.65435 1.84530 2.04014 2.28029 2.37996 2.79984 3.01789 3.15629 3.65165 3.85526 3.95385 3.98777 4.09527 4.25157 4.32502 4.51554 4.57011 4.65614 4.74875 4.78801 4.80598 4.83029 4.88008 4.96024 5.08423 5.26596 5.29880 5.32960 5.42911 5.49922 5.59267 5.64343 6.01426 6.34624 7.02074 7.05265 7.39792 7.81142 8.65763 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.005359 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.098106 B = 5223.986145 C = 5935.430694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.128 4.128 4 S -0.132 6.132 5 C -0.061 4.061 6 C -0.145 4.145 7 C -0.080 4.080 8 C -0.138 4.138 9 C -0.066 4.066 10 C -0.112 4.112 11 C 0.494 3.506 12 O -0.601 6.601 13 N -0.441 5.441 14 C -0.338 4.338 15 H 0.107 0.893 16 C 0.005 3.995 17 N -0.895 5.895 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.275 1.275 21 H -0.286 1.286 22 C 0.233 3.767 23 C 0.271 3.729 24 N -0.515 5.515 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.274 0.726 37 H 0.126 0.874 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 7.192 -16.573 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.216 4.216 3 C -0.187 4.187 4 S 0.113 5.887 5 C -0.175 4.175 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.158 4.158 9 C -0.086 4.086 10 C -0.121 4.121 11 C 0.285 3.715 12 O -0.488 6.488 13 N -0.159 5.159 14 C -0.465 4.465 15 H 0.125 0.875 16 C -0.197 4.197 17 N -0.534 5.534 18 Si 0.812 3.188 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.213 1.213 22 C 0.107 3.893 23 C -0.046 4.046 24 N -0.197 5.197 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.140 7.404 -14.079 16.214 hybrid contribution 0.334 -1.480 -0.770 1.702 sum -2.806 5.924 -14.849 16.231 Atomic orbital electron populations 1.22125 0.92219 1.02621 1.03632 1.23598 1.00066 1.00294 0.97646 1.21593 1.01651 0.91737 1.03690 1.86480 1.73466 0.99410 1.29332 1.22001 1.02145 0.96722 0.96629 1.21407 1.01933 0.98502 0.95042 1.21528 0.96929 0.91581 0.99901 1.21388 1.00400 1.01328 0.92717 1.21339 0.95376 0.93714 0.98209 1.19517 1.04348 0.94552 0.93695 1.18533 0.80699 0.84972 0.87329 1.90658 1.63938 1.28832 1.65369 1.43657 1.31890 1.28039 1.12358 1.19923 1.34136 0.99851 0.92611 0.87519 1.26007 0.98938 0.98457 0.96341 1.69841 1.40964 1.32940 1.09618 0.84930 0.77834 0.77077 0.78970 1.18214 1.20079 1.21261 1.18599 0.96054 0.96836 0.77817 1.29428 0.91954 0.90645 0.92620 1.80747 1.12730 1.12674 1.13534 0.88927 0.92835 0.92397 0.87917 0.91959 0.88168 0.92429 0.82949 0.81617 0.83117 0.86759 0.91586 0.85630 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.68 71.98 0.63 -2.21 16 2 C -0.09 -1.89 2.60 30.59 0.08 -1.82 16 3 C -0.13 -2.26 9.20 71.98 0.66 -1.59 16 4 S -0.13 -4.57 19.24 -56.49 -1.09 -5.66 16 5 C -0.06 -2.19 6.00 23.01 0.14 -2.05 16 6 C -0.15 -3.91 7.96 22.39 0.18 -3.73 16 7 C -0.08 -1.89 10.03 22.30 0.22 -1.67 16 8 C -0.14 -3.92 10.02 22.25 0.22 -3.70 16 9 C -0.07 -2.52 7.82 22.53 0.18 -2.35 16 10 C -0.11 -4.76 4.94 -19.97 -0.10 -4.85 16 11 C 0.49 24.06 6.70 86.62 0.58 24.64 16 12 O -0.60 -31.63 15.11 -4.20 -0.06 -31.69 16 13 N -0.44 -21.30 2.58 -649.30 -1.68 -22.98 16 14 C -0.34 -15.93 7.56 84.09 0.64 -15.29 16 15 H 0.11 4.94 6.20 -2.91 -0.02 4.92 16 16 C 0.01 0.23 4.98 84.95 0.42 0.65 16 17 N -0.90 -44.39 9.12 21.68 0.20 -44.20 16 18 Si 0.99 37.45 29.59 68.60 2.03 39.48 16 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 20 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.29 -11.07 7.11 99.48 0.71 -10.36 16 22 C 0.23 10.69 5.17 84.57 0.44 11.13 16 23 C 0.27 13.64 13.25 89.46 1.18 14.82 16 24 N -0.52 -27.45 18.53 19.99 0.37 -27.08 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.16 5.91 -2.38 -0.01 1.14 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 1.91 6.95 -2.39 -0.02 1.89 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.15 3.12 4.97 -2.91 -0.01 3.11 16 33 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.11 4.87 7.14 -2.91 -0.02 4.85 16 36 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 37 H 0.13 5.56 6.68 -2.39 -0.02 5.54 16 38 H 0.10 4.41 7.43 -2.39 -0.02 4.39 16 Total: -1.00 -65.34 330.81 6.33 -59.01 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 1.09 Total: 21.13 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.47 Total: 11.98 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -1.11 Total: -94.25 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.06 Total: -31.69 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -1.09 Total: -5.66 kcal Total: -65.34 6.33 -59.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012865241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.294 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds