Wall clock time and date at job start Fri Apr 10 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47044 * 2 1 4 4 C 1.34865 * 116.99884 * 179.97438 * 3 2 1 5 5 O 1.21626 * 120.00099 * 0.02562 * 4 3 2 6 6 C 1.46568 * 120.00147 * 179.97438 * 4 3 2 7 7 C 1.40527 * 126.52169 * 0.03000 * 6 4 3 8 8 N 1.30814 * 108.73503 * 179.97438 * 7 6 4 9 9 N 1.39879 * 109.49792 * 359.74755 * 8 7 6 10 10 C 1.36603 * 108.15472 * 0.41657 * 9 8 7 11 11 N 1.33248 * 120.99173 * 179.80186 * 10 9 8 12 12 C 1.31434 * 121.37916 * 359.71494 * 11 10 9 13 13 C 1.39850 * 120.26530 * 359.97438 * 12 11 10 14 14 C 1.37447 * 132.20199 * 179.49893 * 9 8 7 15 15 C 1.47402 * 120.64745 * 0.70630 * 14 9 8 16 16 O 1.21653 * 120.00095 * 179.72365 * 15 14 9 17 17 N 1.34777 * 119.99679 * 359.72069 * 15 14 9 18 18 C 1.36485 * 119.99929 * 179.72174 * 17 15 14 19 19 H 1.08002 * 119.99515 * 0.27823 * 18 17 15 20 20 C 1.39304 * 120.00309 * 180.27995 * 18 17 15 21 21 N 1.31194 * 119.99494 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00088 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47726 * 59.99290 * 22 20 18 24 24 H 1.48494 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46947 * 299.99727 * 22 20 18 26 26 H 1.08996 * 109.47363 * 300.00518 * 1 2 3 27 27 H 1.08998 * 109.46767 * 60.00655 * 1 2 3 28 28 H 1.09002 * 109.46703 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47363 * 239.99482 * 2 1 3 30 30 H 1.09004 * 109.46915 * 119.99773 * 2 1 3 31 31 H 1.07998 * 125.63503 * 359.97438 * 7 6 4 32 32 H 1.08000 * 119.86504 * 180.02562 * 12 11 10 33 33 H 1.08002 * 120.49057 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 35 35 H 0.97004 * 120.00068 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3510 1.5457 0.0005 5 8 4.0919 0.5811 0.0005 6 6 3.9113 2.9000 0.0000 7 6 3.1874 4.1045 -0.0005 8 7 4.0328 5.1028 -0.0003 9 7 5.3407 4.6070 0.0061 10 6 5.2786 3.2424 0.0005 11 7 6.3885 2.5050 0.0008 12 6 7.5795 3.0610 0.0008 13 6 7.7072 4.4536 0.0000 14 6 6.5650 5.2317 -0.0001 15 6 6.6579 6.7028 -0.0009 16 8 7.7477 7.2434 -0.0013 17 7 5.5355 7.4488 -0.0012 18 6 5.6214 8.8109 0.0039 19 1 6.5889 9.2909 0.0035 20 6 4.4613 9.5821 0.0095 21 7 3.2861 8.9990 0.0104 22 14 4.5790 11.4463 0.0156 23 1 5.3059 11.9006 -1.1970 24 1 3.2130 12.0285 0.0205 25 1 5.3119 11.8920 1.2279 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.1109 4.1917 -0.0009 32 1 8.4629 2.4398 0.0006 33 1 8.6841 4.9143 -0.0004 34 1 4.6665 7.0178 -0.0005 35 1 2.4782 9.5359 0.0140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155271363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:14 Heat of formation + Delta-G solvation = -1.720031 kcal Electronic energy + Delta-G solvation = -24016.719726 eV Core-core repulsion = 20210.463690 eV Total energy + Delta-G solvation = -3806.256036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12666 -39.78577 -38.48031 -37.57488 -36.14512 -34.57857 -33.57808 -31.82270 -31.73373 -30.79660 -29.27998 -26.42872 -24.62754 -24.37277 -22.76728 -22.29229 -21.24181 -19.74605 -18.45727 -18.20160 -17.35322 -16.70197 -16.40505 -16.25527 -15.90829 -15.80195 -15.19451 -14.67030 -14.24234 -13.95552 -13.58314 -13.46432 -13.43262 -13.08099 -12.84585 -12.64594 -12.38476 -12.08657 -11.89186 -11.66768 -11.48541 -11.29713 -10.79776 -10.69779 -10.68991 -10.38809 -10.06024 -9.98658 -9.61033 -9.38987 -8.87339 -8.56783 -7.82773 -7.11105 -4.22157 0.32442 0.98960 2.09179 2.18297 2.86974 2.95141 2.96170 2.98791 3.13189 3.61343 3.67501 3.97666 4.01141 4.22895 4.40702 4.81507 4.90112 4.94030 5.05048 5.12129 5.23292 5.24427 5.34536 5.40881 5.71441 5.79513 5.85051 5.91889 5.94464 6.17536 6.44525 6.67175 6.79524 6.86750 7.39523 7.58541 7.86709 8.02706 8.22124 8.52778 8.95025 9.59340 9.99528 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.004123 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.092060 B = 6788.752556 C = 8477.389768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.360 6.360 4 C 0.550 3.450 5 O -0.512 6.512 6 C -0.310 4.310 7 C 0.153 3.847 8 N -0.307 5.307 9 N -0.303 5.303 10 C 0.346 3.654 11 N -0.481 5.481 12 C 0.189 3.811 13 C -0.206 4.206 14 C 0.186 3.814 15 C 0.413 3.587 16 O -0.595 6.595 17 N -0.491 5.491 18 C -0.264 4.264 19 H 0.122 0.878 20 C 0.025 3.975 21 N -0.827 5.827 22 Si 0.948 3.052 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.263 1.263 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.208 0.792 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.416 0.584 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -10.119 -0.010 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.278 6.278 4 C 0.396 3.604 5 O -0.401 6.401 6 C -0.325 4.325 7 C -0.030 4.030 8 N -0.128 5.128 9 N -0.074 5.074 10 C 0.110 3.890 11 N -0.195 5.195 12 C 0.014 3.986 13 C -0.232 4.232 14 C 0.066 3.934 15 C 0.204 3.796 16 O -0.485 6.485 17 N -0.125 5.125 18 C -0.397 4.397 19 H 0.139 0.861 20 C -0.186 4.186 21 N -0.461 5.461 22 Si 0.772 3.228 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.188 1.188 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.224 0.776 32 H 0.199 0.801 33 H 0.192 0.808 34 H 0.258 0.742 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.731 -9.597 -0.006 10.297 hybrid contribution -0.512 0.361 0.005 0.626 sum -4.242 -9.236 -0.001 10.164 Atomic orbital electron populations 1.21797 0.92922 1.02634 1.03525 1.22903 0.94921 0.80629 1.02369 1.86537 1.24196 1.31658 1.85403 1.19441 0.79945 0.88127 0.72886 1.90861 1.60026 1.41884 1.47289 1.18007 0.88553 0.91979 1.33951 1.24134 1.00304 0.87928 0.90638 1.77332 0.83574 1.21207 1.30662 1.47334 1.06457 1.07034 1.46556 1.20255 0.94103 0.79990 0.94609 1.68057 0.96564 1.36045 1.18882 1.23434 0.95091 0.92433 0.87615 1.22112 0.98810 0.93704 1.08567 1.21810 0.80703 0.95668 0.95244 1.16791 0.86075 0.83224 0.93525 1.90686 1.26272 1.69955 1.61559 1.42641 1.09501 1.07550 1.52837 1.20335 0.95921 0.80903 1.42578 0.86068 1.25868 0.94184 1.03062 0.95503 1.69594 0.98480 1.38869 1.39200 0.85616 0.78265 0.78849 0.80088 1.18799 1.20002 1.18794 0.91493 0.91500 0.90547 0.91510 0.91513 0.77566 0.80101 0.80799 0.74161 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.84 16 2 C 0.07 0.75 6.20 37.16 0.23 0.98 16 3 O -0.36 -5.25 10.06 -40.94 -0.41 -5.67 16 4 C 0.55 9.73 7.93 34.09 0.27 10.00 16 5 O -0.51 -10.19 16.53 -19.36 -0.32 -10.51 16 6 C -0.31 -5.73 6.17 -104.65 -0.65 -6.37 16 7 C 0.15 2.62 11.79 -17.12 -0.20 2.42 16 8 N -0.31 -6.28 9.80 30.76 0.30 -5.98 16 9 N -0.30 -6.27 3.90 -8.43 -0.03 -6.31 16 10 C 0.35 6.86 7.75 -155.88 -1.21 5.65 16 11 N -0.48 -8.86 10.21 -12.03 -0.12 -8.99 16 12 C 0.19 2.80 11.27 -17.12 -0.19 2.60 16 13 C -0.21 -3.44 9.67 -38.99 -0.38 -3.82 16 14 C 0.19 3.88 6.85 -81.63 -0.56 3.32 16 15 C 0.41 10.12 7.74 -12.53 -0.10 10.02 16 16 O -0.60 -15.67 15.95 5.23 0.08 -15.58 16 17 N -0.49 -12.50 5.26 -11.98 -0.06 -12.56 16 18 C -0.26 -6.77 9.68 -15.08 -0.15 -6.92 16 19 H 0.12 3.13 7.15 -52.49 -0.38 2.76 16 20 C 0.03 0.60 5.50 -17.43 -0.10 0.51 16 21 N -0.83 -20.00 13.04 55.51 0.72 -19.28 16 22 Si 0.95 18.08 29.56 -169.99 -5.02 13.06 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.21 2.67 8.06 -52.49 -0.42 2.25 16 32 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.17 2.60 7.68 -52.49 -0.40 2.19 16 34 H 0.42 10.39 4.88 -40.82 -0.20 10.19 16 35 H 0.29 6.40 8.30 -40.82 -0.34 6.07 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -31.82 321.27 -5.73 -37.55 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -3.07 Total: 11.87 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: -2.64 Total: 17.55 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.81 Total: -53.12 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.65 Total: -31.76 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.82 -5.73 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155271363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.835 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds