Wall clock time and date at job start Fri Apr 10 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21587 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.47630 * 120.00064 * 179.97438 * 13 12 2 16 16 C 1.40407 * 120.29995 * 359.72294 * 15 13 12 17 17 N 1.31047 * 121.56456 * 179.73580 * 16 15 13 18 18 C 1.33527 * 121.61853 * 0.55821 * 17 16 15 19 19 N 1.33910 * 121.48238 * 179.69986 * 18 17 16 20 20 C 1.31846 * 120.57337 * 180.02562 * 19 18 17 21 21 O 1.35332 * 118.53957 * 180.02562 * 20 19 18 22 22 N 1.32847 * 122.91575 * 0.02562 * 20 19 18 23 23 C 1.32366 * 121.29748 * 359.97438 * 22 20 19 24 24 O 1.35202 * 120.86928 * 180.02562 * 23 22 20 25 25 C 1.41564 * 118.26644 * 0.02562 * 23 22 20 26 26 C 1.39458 * 120.29837 * 180.02562 * 15 13 12 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 31 31 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 32 32 H 1.07995 * 119.21244 * 0.02562 * 16 15 13 33 33 H 0.96700 * 113.99908 * 90.00968 * 21 20 19 34 34 H 0.96700 * 113.99436 * 269.98157 * 24 23 22 35 35 H 1.08001 * 121.08463 * 0.02562 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8582 1.1616 -2.4116 15 6 2.6396 -0.7140 -3.5624 16 6 2.9813 -2.0747 -3.5050 17 7 3.4162 -2.7179 -4.5607 18 6 3.5658 -2.1085 -5.7393 19 7 4.0160 -2.7670 -6.8149 20 6 4.1574 -2.1474 -7.9700 21 8 4.6152 -2.8528 -9.0304 22 7 3.8705 -0.8613 -8.1392 23 6 3.4189 -0.1203 -7.1397 24 8 3.1292 1.1877 -7.3218 25 6 3.2472 -0.7330 -5.8752 26 6 2.7756 -0.0243 -4.7668 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.7095 1.1617 3.4844 31 1 2.2490 -1.6317 -1.1527 32 1 2.8791 -2.6047 -2.5696 33 1 3.9187 -3.2711 -9.5547 34 1 3.8742 1.7820 -7.1582 35 1 2.5256 1.0238 -4.8404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338064770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:51 Heat of formation + Delta-G solvation = -20.399694 kcal Electronic energy + Delta-G solvation = -23627.968564 eV Core-core repulsion = 19820.902517 eV Total energy + Delta-G solvation = -3807.066047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.13383 -39.91131 -38.80212 -38.53718 -36.63318 -35.07184 -33.89716 -32.82741 -32.50271 -30.97886 -28.83369 -25.66340 -25.44925 -25.25808 -23.18616 -22.17016 -20.62873 -19.95834 -19.42436 -18.75616 -18.50894 -17.30684 -16.79757 -16.35955 -15.78655 -15.75200 -15.23505 -14.90685 -14.76032 -14.31412 -14.11786 -13.52335 -13.24536 -13.08819 -12.67125 -12.53653 -12.38545 -11.86434 -11.51327 -11.40704 -11.17025 -11.05366 -10.88599 -10.69935 -10.40333 -10.32399 -10.11737 -9.56930 -9.31878 -9.19199 -9.10811 -8.65776 -8.13712 -6.21549 -4.31669 -0.54495 -0.06175 1.19882 2.05133 2.29807 2.88268 3.19947 3.23526 3.27291 3.28596 3.46817 3.59265 3.75307 3.95994 4.17973 4.28636 4.38378 4.59570 4.76592 4.88692 5.11483 5.12704 5.45390 5.64010 5.84886 6.16766 6.70580 6.70992 6.82489 6.95135 7.01256 7.14148 7.22243 7.38519 7.57252 7.66577 7.77575 8.02840 8.40702 8.60952 8.83866 9.36010 10.84419 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003016 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.094267 B = 9281.056370 C = 9963.495622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.696 5.696 13 C 0.548 3.452 14 O -0.542 6.542 15 C -0.189 4.189 16 C 0.217 3.783 17 N -0.471 5.471 18 C 0.383 3.617 19 N -0.512 5.512 20 C 0.550 3.450 21 O -0.452 6.452 22 N -0.560 5.560 23 C 0.460 3.540 24 O -0.463 6.463 25 C -0.247 4.247 26 C 0.050 3.950 27 H 0.092 0.908 28 H 0.016 0.984 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.181 0.819 33 H 0.417 0.583 34 H 0.421 0.579 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -3.510 -17.788 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.343 5.343 13 C 0.332 3.668 14 O -0.421 6.421 15 C -0.194 4.194 16 C 0.041 3.959 17 N -0.181 5.181 18 C 0.138 3.862 19 N -0.241 5.241 20 C 0.242 3.758 21 O -0.256 6.256 22 N -0.297 5.297 23 C 0.258 3.742 24 O -0.272 6.272 25 C -0.257 4.257 26 C 0.021 3.979 27 H 0.111 0.889 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.198 0.802 33 H 0.278 0.722 34 H 0.284 0.716 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.505 -4.118 -18.427 19.412 hybrid contribution -0.074 0.424 1.246 1.318 sum 4.431 -3.694 -17.182 18.124 Atomic orbital electron populations 1.22097 0.98101 0.99395 1.01142 1.18859 0.91241 0.94084 0.79484 0.92952 1.21187 1.32810 1.13464 0.90174 0.91869 1.24879 0.94666 0.94927 0.99120 1.69894 1.35602 1.22359 1.24080 0.86424 0.78623 0.79889 0.82045 1.20513 1.21039 1.19731 1.46554 1.63921 1.13576 1.10295 1.17755 0.79403 0.86820 0.82850 1.90776 1.51384 1.15207 1.84752 1.21528 1.05403 0.95864 0.96647 1.23546 0.85602 0.90295 0.96423 1.67657 1.15706 1.37433 0.97262 1.18992 0.90662 0.85346 0.91207 1.67844 1.18448 1.38864 0.98937 1.19686 0.86602 0.83393 0.86083 1.84684 1.35404 1.67321 1.38160 1.67430 1.17701 1.08627 1.35907 1.19239 0.83935 0.86015 0.85044 1.84606 1.39796 1.11500 1.91289 1.20414 1.10859 0.98216 0.96197 1.21815 0.86327 1.00994 0.88752 0.88915 0.96504 0.95236 0.92443 0.77732 0.80227 0.72214 0.71593 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.26 6.23 2.56 -69.08 -0.18 6.05 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.77 11.32 55.43 0.63 -23.14 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.76 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 N -0.70 -12.94 5.02 -55.94 -0.28 -13.22 16 13 C 0.55 9.75 7.73 -12.43 -0.10 9.65 16 14 O -0.54 -11.54 16.05 5.29 0.08 -11.46 16 15 C -0.19 -2.59 5.89 -104.79 -0.62 -3.21 16 16 C 0.22 2.70 10.68 -17.07 -0.18 2.51 16 17 N -0.47 -6.60 10.40 -12.29 -0.13 -6.72 16 18 C 0.38 5.33 7.66 -157.74 -1.21 4.12 16 19 N -0.51 -7.09 10.52 -14.36 -0.15 -7.24 16 20 C 0.55 6.53 8.64 -91.20 -0.79 5.74 16 21 O -0.45 -4.16 13.63 -17.69 -0.24 -4.40 16 22 N -0.56 -6.48 10.45 -14.39 -0.15 -6.63 16 23 C 0.46 4.88 7.89 -16.05 -0.13 4.75 16 24 O -0.46 -3.64 12.95 -17.30 -0.22 -3.87 16 25 C -0.25 -2.98 5.75 -106.68 -0.61 -3.59 16 26 C 0.05 0.61 9.27 -38.56 -0.36 0.25 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.39 5.99 6.56 -40.82 -0.27 5.72 16 32 H 0.18 1.78 6.37 -52.49 -0.33 1.44 16 33 H 0.42 1.52 9.06 45.56 0.41 1.93 16 34 H 0.42 1.09 9.06 45.56 0.41 1.50 16 35 H 0.17 1.85 7.42 -52.49 -0.39 1.46 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -34.00 315.02 -6.21 -40.21 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -1.26 Total: 5.81 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -4.22 Total: 11.14 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.08 Total: -56.95 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.38 Total: -19.73 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.00 -6.21 -40.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338064770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.814 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds