Wall clock time and date at job start Fri Apr 10 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21587 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.47630 * 120.00064 * 179.97438 * 13 12 2 16 16 C 1.40407 * 120.29995 * 359.72294 * 15 13 12 17 17 N 1.31047 * 121.56456 * 179.73580 * 16 15 13 18 18 C 1.33527 * 121.61853 * 0.55821 * 17 16 15 19 19 N 1.33910 * 121.48238 * 179.69986 * 18 17 16 20 20 C 1.31846 * 120.57337 * 180.02562 * 19 18 17 21 21 O 1.35332 * 118.53957 * 180.02562 * 20 19 18 22 22 N 1.32847 * 122.91575 * 0.02562 * 20 19 18 23 23 C 1.32366 * 121.29748 * 359.97438 * 22 20 19 24 24 O 1.35202 * 120.86928 * 180.02562 * 23 22 20 25 25 C 1.41564 * 118.26644 * 0.02562 * 23 22 20 26 26 C 1.39458 * 120.29837 * 180.02562 * 15 13 12 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 31 31 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 32 32 H 1.07995 * 119.21244 * 0.02562 * 16 15 13 33 33 H 0.96700 * 113.99908 * 90.00968 * 21 20 19 34 34 H 0.96700 * 113.99436 * 269.98157 * 24 23 22 35 35 H 1.08001 * 121.08463 * 0.02562 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8582 1.1616 -2.4116 15 6 2.6396 -0.7140 -3.5624 16 6 2.9813 -2.0747 -3.5050 17 7 3.4162 -2.7179 -4.5607 18 6 3.5658 -2.1085 -5.7393 19 7 4.0160 -2.7670 -6.8149 20 6 4.1574 -2.1474 -7.9700 21 8 4.6152 -2.8528 -9.0304 22 7 3.8705 -0.8613 -8.1392 23 6 3.4189 -0.1203 -7.1397 24 8 3.1292 1.1877 -7.3218 25 6 3.2472 -0.7330 -5.8752 26 6 2.7756 -0.0243 -4.7668 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.7095 1.1617 3.4844 31 1 2.2490 -1.6317 -1.1527 32 1 2.8791 -2.6047 -2.5696 33 1 3.9187 -3.2711 -9.5547 34 1 3.8742 1.7820 -7.1582 35 1 2.5256 1.0238 -4.8404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338064770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:50 Heat of formation + Delta-G solvation = -53.767914 kcal Electronic energy + Delta-G solvation = -23629.415519 eV Core-core repulsion = 19820.902517 eV Total energy + Delta-G solvation = -3808.513002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.06052 -41.09063 -39.79672 -39.49091 -37.46973 -36.79011 -34.85470 -34.42379 -33.62208 -32.21545 -30.43058 -27.31538 -26.58515 -26.40191 -24.15121 -23.54780 -21.97905 -21.17999 -20.34517 -19.92860 -19.40445 -18.39084 -18.14735 -17.45705 -17.13611 -16.80612 -16.50825 -16.22608 -15.96921 -15.67491 -15.32154 -14.83784 -14.56173 -14.29602 -13.83057 -13.73300 -13.50711 -13.19163 -12.97201 -12.87669 -12.74334 -12.37970 -12.30417 -12.22600 -12.11887 -11.75211 -11.08861 -11.06810 -10.92056 -10.57645 -10.35568 -10.17721 -9.77359 -8.15392 -6.32053 -1.44582 -1.01559 0.24590 1.10535 1.48106 1.48492 1.49770 1.59399 1.99297 2.11019 2.21680 2.48050 2.55577 2.66352 3.00779 3.16206 3.29559 3.41291 3.59085 3.77114 3.96072 4.21298 4.50417 4.66124 4.80340 4.89701 4.96610 5.11956 5.29400 5.43881 5.58353 5.69999 5.89672 6.11707 6.14120 6.31079 6.37729 6.73610 6.74674 6.83824 7.29049 7.44605 8.90776 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003016 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.094267 B = 9281.056370 C = 9963.495622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.007 0.993 4 C -0.547 4.547 5 H 0.078 0.922 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.259 1.259 12 N -0.693 5.693 13 C 0.554 3.446 14 O -0.582 6.582 15 C -0.203 4.203 16 C 0.230 3.770 17 N -0.491 5.491 18 C 0.376 3.624 19 N -0.543 5.543 20 C 0.561 3.439 21 O -0.454 6.454 22 N -0.569 5.569 23 C 0.480 3.520 24 O -0.460 6.460 25 C -0.254 4.254 26 C 0.071 3.929 27 H 0.067 0.933 28 H 0.016 0.984 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.203 0.797 33 H 0.440 0.560 34 H 0.445 0.555 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -4.618 -18.950 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.025 0.975 4 C -0.585 4.585 5 H 0.096 0.904 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.183 1.183 12 N -0.342 5.342 13 C 0.340 3.660 14 O -0.464 6.464 15 C -0.208 4.208 16 C 0.055 3.945 17 N -0.202 5.202 18 C 0.130 3.870 19 N -0.274 5.274 20 C 0.254 3.746 21 O -0.262 6.262 22 N -0.307 5.307 23 C 0.278 3.722 24 O -0.273 6.273 25 C -0.264 4.264 26 C 0.042 3.958 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.219 0.781 33 H 0.306 0.694 34 H 0.313 0.687 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.306 -5.250 -19.637 21.008 hybrid contribution -0.285 0.832 1.401 1.654 sum 5.021 -4.418 -18.236 19.424 Atomic orbital electron populations 1.21929 0.98073 0.99748 0.99853 1.18423 0.91230 0.92221 0.81274 0.97472 1.21561 1.32580 1.13717 0.90624 0.90438 1.25731 0.94864 0.95560 1.02191 1.70041 1.36937 1.23891 1.24590 0.85397 0.77661 0.79350 0.78254 1.20534 1.21290 1.18281 1.46218 1.64223 1.14331 1.09412 1.18150 0.78121 0.86291 0.83410 1.90753 1.53053 1.17097 1.85491 1.21059 1.08014 0.96466 0.95307 1.23765 0.84248 0.89626 0.96888 1.67701 1.16894 1.37885 0.97714 1.19213 0.90341 0.86115 0.91290 1.67877 1.20319 1.39626 0.99531 1.19855 0.84879 0.83629 0.86195 1.84639 1.36602 1.67277 1.37659 1.67596 1.18611 1.08553 1.35920 1.19235 0.81931 0.86848 0.84199 1.84572 1.41171 1.10526 1.91050 1.20366 1.11589 0.97652 0.96759 1.21926 0.84370 1.01306 0.88167 0.91441 0.96507 0.93891 0.92587 0.75705 0.78094 0.69424 0.68664 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 9.26 71.98 0.67 -5.82 16 2 C 0.27 12.98 2.56 44.24 0.11 13.09 16 3 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 4 C -0.55 -27.00 8.73 25.60 0.22 -26.77 16 5 H 0.08 3.52 7.74 -2.91 -0.02 3.49 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -50.34 11.32 21.45 0.24 -50.09 16 8 Si 0.97 40.20 29.54 68.60 2.03 42.23 16 9 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 N -0.69 -25.50 5.02 -449.17 -2.26 -27.75 16 13 C 0.55 19.58 7.73 86.72 0.67 20.25 16 14 O -0.58 -25.15 16.05 -3.99 -0.06 -25.22 16 15 C -0.20 -5.35 5.89 -19.98 -0.12 -5.47 16 16 C 0.23 5.38 10.68 85.34 0.91 6.29 16 17 N -0.49 -13.14 10.40 -192.81 -2.01 -15.15 16 18 C 0.38 9.94 7.66 135.06 1.03 10.97 16 19 N -0.54 -14.31 10.52 -312.62 -3.29 -17.60 16 20 C 0.56 12.30 8.64 180.55 1.56 13.86 16 21 O -0.45 -7.42 13.63 -86.20 -1.17 -8.60 16 22 N -0.57 -11.89 10.45 -425.27 -4.45 -16.34 16 23 C 0.48 9.07 7.89 85.43 0.67 9.74 16 24 O -0.46 -5.93 12.95 -84.82 -1.10 -7.03 16 25 C -0.25 -5.66 5.75 -21.20 -0.12 -5.79 16 26 C 0.07 1.62 9.27 22.93 0.21 1.83 16 27 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.41 11.96 6.56 -92.71 -0.61 11.35 16 32 H 0.20 3.58 6.37 -2.91 -0.02 3.56 16 33 H 0.44 2.20 9.06 -74.06 -0.67 1.53 16 34 H 0.45 0.90 9.06 -74.06 -0.67 0.23 16 35 H 0.18 3.63 7.42 -2.91 -0.02 3.61 16 Total: -1.00 -73.64 315.02 -6.52 -80.16 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -0.73 Total: 11.88 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 6.28 Total: 33.51 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -11.75 Total: -126.94 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -2.34 Total: -40.84 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -73.64 -6.52 -80.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338064770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.391 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds