Wall clock time and date at job start Fri Apr 10 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47115 * 2 1 4 4 C 1.36889 * 119.99974 * 278.28428 * 3 2 1 5 5 H 1.08005 * 119.99799 * 178.98151 * 4 3 2 6 6 C 1.39026 * 120.00003 * 358.98349 * 4 3 2 7 7 N 1.31379 * 120.00204 * 11.94232 * 6 4 3 8 8 Si 1.86800 * 119.99962 * 191.94181 * 6 4 3 9 9 H 1.48495 * 109.47223 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47386 * 120.00109 * 8 6 4 11 11 H 1.48504 * 109.47219 * 239.99863 * 8 6 4 12 12 C 1.34784 * 119.99837 * 98.28568 * 3 2 1 13 13 O 1.21622 * 119.99891 * 186.05748 * 12 3 2 14 14 C 1.47516 * 120.00144 * 6.05603 * 12 3 2 15 15 C 1.40463 * 120.30985 * 135.10564 * 14 12 3 16 16 N 1.31035 * 121.56072 * 179.97438 * 15 14 12 17 17 C 1.33532 * 121.62964 * 359.97438 * 16 15 14 18 18 N 1.33908 * 121.47148 * 180.02562 * 17 16 15 19 19 C 1.31850 * 120.57119 * 179.97438 * 18 17 16 20 20 O 1.35335 * 118.53826 * 179.97438 * 19 18 17 21 21 N 1.32847 * 122.92049 * 0.02562 * 19 18 17 22 22 C 1.32373 * 121.29541 * 359.97438 * 21 19 18 23 23 O 1.35206 * 120.86848 * 180.02562 * 22 21 19 24 24 C 1.41570 * 118.26544 * 359.97438 * 22 21 19 25 25 C 1.39531 * 120.30585 * 315.08446 * 14 12 3 26 26 H 1.09002 * 109.47033 * 310.12183 * 1 2 3 27 27 H 1.09002 * 109.46721 * 70.11959 * 1 2 3 28 28 H 1.08998 * 109.46809 * 190.11829 * 1 2 3 29 29 H 1.08996 * 109.47163 * 239.99883 * 2 1 3 30 30 H 1.09006 * 109.47188 * 119.99871 * 2 1 3 31 31 H 0.96996 * 120.00260 * 180.02562 * 7 6 4 32 32 H 1.08005 * 119.21685 * 359.95386 * 15 14 12 33 33 H 0.96698 * 113.99919 * 90.00270 * 20 19 18 34 34 H 0.96695 * 113.99762 * 269.98171 * 23 22 21 35 35 H 1.07998 * 121.08572 * 359.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0854 2.0834 -1.1731 5 1 2.4299 3.1071 -1.1708 6 6 1.7102 1.4790 -2.3675 7 7 1.0753 0.3289 -2.3507 8 14 2.1087 2.3021 -3.9964 9 1 2.8236 3.5789 -3.7440 10 1 2.9706 1.4046 -4.8068 11 1 0.8491 2.5768 -4.7335 12 6 2.4016 1.9605 1.1551 13 8 2.7020 3.1389 1.1740 14 6 2.4566 1.1652 2.3963 15 6 3.5605 1.2720 3.2582 16 7 3.6346 0.5776 4.3670 17 6 2.6647 -0.2645 4.7321 18 7 2.7435 -0.9721 5.8662 19 6 1.7750 -1.7983 6.2097 20 8 1.8974 -2.4934 7.3644 21 7 0.6850 -1.9794 5.4723 22 6 0.5093 -1.3283 4.3332 23 8 -0.6037 -1.5188 3.5897 24 6 1.5169 -0.4263 3.9144 25 6 1.4122 0.3004 2.7253 26 1 -0.3633 0.6623 0.7858 27 1 -0.3633 0.3495 -0.9665 28 1 -0.3633 -1.0117 0.1805 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.8138 -0.0930 -3.1840 32 1 4.3676 1.9419 3.0007 33 1 1.5299 -2.0416 8.1363 34 1 -0.5242 -2.2280 2.9373 35 1 0.5501 0.1975 2.0831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344467166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:07 Heat of formation + Delta-G solvation = 14.313938 kcal Electronic energy + Delta-G solvation = -24845.227485 eV Core-core repulsion = 21039.666734 eV Total energy + Delta-G solvation = -3805.560751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77613 -39.63693 -38.47368 -38.24660 -36.31003 -35.47183 -33.68002 -32.59338 -31.76824 -30.33707 -29.78745 -25.86609 -25.30892 -24.38855 -22.81261 -22.44726 -20.98246 -19.89037 -19.07993 -18.33874 -17.71354 -17.07954 -16.51467 -16.26501 -15.92177 -15.39135 -15.18876 -14.62286 -14.39867 -14.07790 -13.88415 -13.55891 -12.88075 -12.68882 -12.47045 -12.36597 -12.10456 -11.96637 -11.48578 -11.38531 -11.17348 -11.03654 -10.96884 -10.50079 -10.46008 -10.27922 -10.20824 -9.68498 -9.18634 -9.08025 -8.82996 -8.51746 -8.11527 -6.57289 -4.07523 -0.17598 0.36463 1.60196 2.45575 2.64294 2.97361 3.09245 3.15438 3.23339 3.62043 3.81715 3.86129 3.97211 4.28467 4.47192 4.56389 4.83131 4.87480 4.98351 5.11755 5.47665 5.52114 5.71013 5.85488 6.01344 6.32003 6.34685 6.40176 6.49148 6.54986 7.02042 7.06862 7.23013 7.29166 7.50375 7.53977 7.73967 8.04205 8.18680 8.84468 9.06220 9.62672 10.28823 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.004245 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.755195 B = 6594.183671 C = 7394.036829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 N -0.417 5.417 4 C -0.285 4.285 5 H 0.113 0.887 6 C 0.024 3.976 7 N -0.863 5.863 8 Si 0.936 3.064 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.463 3.537 13 O -0.586 6.586 14 C -0.150 4.150 15 C 0.225 3.775 16 N -0.477 5.477 17 C 0.367 3.633 18 N -0.510 5.510 19 C 0.534 3.466 20 O -0.454 6.454 21 N -0.560 5.560 22 C 0.448 3.552 23 O -0.464 6.464 24 C -0.235 4.235 25 C -0.012 4.012 26 H 0.028 0.972 27 H 0.103 0.897 28 H 0.039 0.961 29 H 0.123 0.877 30 H 0.033 0.967 31 H 0.271 0.729 32 H 0.180 0.820 33 H 0.413 0.587 34 H 0.418 0.582 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -6.356 7.346 10.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.132 5.132 4 C -0.412 4.412 5 H 0.131 0.869 6 C -0.178 4.178 7 N -0.503 5.503 8 Si 0.762 3.238 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.252 3.748 13 O -0.473 6.473 14 C -0.157 4.157 15 C 0.050 3.950 16 N -0.187 5.187 17 C 0.121 3.879 18 N -0.239 5.239 19 C 0.226 3.774 20 O -0.257 6.257 21 N -0.297 5.297 22 C 0.246 3.754 23 O -0.272 6.272 24 C -0.244 4.244 25 C -0.041 4.041 26 H 0.046 0.954 27 H 0.122 0.878 28 H 0.058 0.942 29 H 0.141 0.859 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.197 0.803 33 H 0.272 0.728 34 H 0.280 0.720 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.667 -6.393 8.682 10.910 hybrid contribution -0.957 0.305 -1.850 2.105 sum -2.624 -6.088 6.833 9.520 Atomic orbital electron populations 1.22365 0.96132 0.98778 1.03802 1.22151 0.94999 0.83386 1.01781 1.43885 1.51299 1.12000 1.05967 1.20057 1.39917 0.98648 0.82598 0.86930 1.25410 0.95654 0.96515 1.00247 1.70038 1.35579 1.16983 1.27677 0.85681 0.78503 0.79409 0.80198 1.18950 1.20340 1.20468 1.17319 0.87763 0.87252 0.82464 1.90668 1.56611 1.15022 1.84973 1.21442 0.96174 0.98910 0.99149 1.23359 0.95334 0.90784 0.85534 1.67658 1.26521 1.07496 1.17025 1.18929 0.88396 0.92061 0.88487 1.67760 1.30423 1.08166 1.17512 1.19595 0.83560 0.85923 0.88372 1.84686 1.82139 1.43831 1.15062 1.67352 1.24612 1.28969 1.08784 1.19230 0.82998 0.86717 0.86462 1.84598 1.32178 1.58825 1.51644 1.20375 0.98182 1.05472 1.00388 1.22493 0.98833 0.90094 0.92684 0.95351 0.87843 0.94194 0.85933 0.94884 0.91807 0.80286 0.72757 0.72016 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.56 37.16 0.32 -2.41 16 2 C 0.10 1.95 4.89 -4.04 -0.02 1.93 16 3 N -0.42 -9.48 2.64 -116.00 -0.31 -9.79 16 4 C -0.28 -6.99 9.49 -15.00 -0.14 -7.13 16 5 H 0.11 2.94 7.20 -52.48 -0.38 2.56 16 6 C 0.02 0.55 5.34 -17.45 -0.09 0.46 16 7 N -0.86 -18.97 7.26 55.50 0.40 -18.56 16 8 Si 0.94 18.35 29.57 -169.99 -5.03 13.32 16 9 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 10 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 12 C 0.46 10.43 7.23 -12.48 -0.09 10.34 16 13 O -0.59 -15.09 16.58 5.26 0.09 -15.00 16 14 C -0.15 -2.79 5.13 -104.80 -0.54 -3.33 16 15 C 0.23 3.88 10.81 -17.05 -0.18 3.70 16 16 N -0.48 -8.50 10.40 -12.28 -0.13 -8.63 16 17 C 0.37 6.39 7.66 -157.73 -1.21 5.18 16 18 N -0.51 -8.58 10.52 -14.36 -0.15 -8.73 16 19 C 0.53 7.84 8.64 -91.19 -0.79 7.05 16 20 O -0.45 -5.29 13.63 -17.70 -0.24 -5.53 16 21 N -0.56 -8.11 10.45 -14.39 -0.15 -8.26 16 22 C 0.45 6.24 7.89 -16.05 -0.13 6.12 16 23 O -0.46 -5.17 12.95 -17.31 -0.22 -5.39 16 24 C -0.23 -3.71 5.75 -106.68 -0.61 -4.32 16 25 C -0.01 -0.20 7.06 -38.54 -0.27 -0.47 16 26 H 0.03 0.49 6.53 -51.93 -0.34 0.16 16 27 H 0.10 2.13 5.88 -51.93 -0.31 1.83 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.12 2.61 5.72 -51.93 -0.30 2.32 16 30 H 0.03 0.58 4.98 -51.93 -0.26 0.32 16 31 H 0.27 5.65 8.31 -40.82 -0.34 5.31 16 32 H 0.18 2.78 8.06 -52.48 -0.42 2.35 16 33 H 0.41 2.48 9.06 45.56 0.41 2.90 16 34 H 0.42 2.56 9.06 45.56 0.41 2.98 16 35 H 0.17 2.64 3.55 -52.49 -0.19 2.46 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.71 300.25 -5.89 -36.60 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -0.92 Total: 8.34 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: -3.76 Total: 17.11 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.33 Total: -53.97 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.38 Total: -25.92 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.71 -5.89 -36.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344467166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.915 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds