Wall clock time and date at job start Fri Apr 10 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47115 * 2 1 4 4 C 1.36889 * 119.99974 * 278.28428 * 3 2 1 5 5 H 1.08005 * 119.99799 * 178.98151 * 4 3 2 6 6 C 1.39026 * 120.00003 * 358.98349 * 4 3 2 7 7 N 1.31379 * 120.00204 * 11.94232 * 6 4 3 8 8 Si 1.86800 * 119.99962 * 191.94181 * 6 4 3 9 9 H 1.48495 * 109.47223 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47386 * 120.00109 * 8 6 4 11 11 H 1.48504 * 109.47219 * 239.99863 * 8 6 4 12 12 C 1.34784 * 119.99837 * 98.28568 * 3 2 1 13 13 O 1.21622 * 119.99891 * 186.05748 * 12 3 2 14 14 C 1.47516 * 120.00144 * 6.05603 * 12 3 2 15 15 C 1.40463 * 120.30985 * 135.10564 * 14 12 3 16 16 N 1.31035 * 121.56072 * 179.97438 * 15 14 12 17 17 C 1.33532 * 121.62964 * 359.97438 * 16 15 14 18 18 N 1.33908 * 121.47148 * 180.02562 * 17 16 15 19 19 C 1.31850 * 120.57119 * 179.97438 * 18 17 16 20 20 O 1.35335 * 118.53826 * 179.97438 * 19 18 17 21 21 N 1.32847 * 122.92049 * 0.02562 * 19 18 17 22 22 C 1.32373 * 121.29541 * 359.97438 * 21 19 18 23 23 O 1.35206 * 120.86848 * 180.02562 * 22 21 19 24 24 C 1.41570 * 118.26544 * 359.97438 * 22 21 19 25 25 C 1.39531 * 120.30585 * 315.08446 * 14 12 3 26 26 H 1.09002 * 109.47033 * 310.12183 * 1 2 3 27 27 H 1.09002 * 109.46721 * 70.11959 * 1 2 3 28 28 H 1.08998 * 109.46809 * 190.11829 * 1 2 3 29 29 H 1.08996 * 109.47163 * 239.99883 * 2 1 3 30 30 H 1.09006 * 109.47188 * 119.99871 * 2 1 3 31 31 H 0.96996 * 120.00260 * 180.02562 * 7 6 4 32 32 H 1.08005 * 119.21685 * 359.95386 * 15 14 12 33 33 H 0.96698 * 113.99919 * 90.00270 * 20 19 18 34 34 H 0.96695 * 113.99762 * 269.98171 * 23 22 21 35 35 H 1.07998 * 121.08572 * 359.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0854 2.0834 -1.1731 5 1 2.4299 3.1071 -1.1708 6 6 1.7102 1.4790 -2.3675 7 7 1.0753 0.3289 -2.3507 8 14 2.1087 2.3021 -3.9964 9 1 2.8236 3.5789 -3.7440 10 1 2.9706 1.4046 -4.8068 11 1 0.8491 2.5768 -4.7335 12 6 2.4016 1.9605 1.1551 13 8 2.7020 3.1389 1.1740 14 6 2.4566 1.1652 2.3963 15 6 3.5605 1.2720 3.2582 16 7 3.6346 0.5776 4.3670 17 6 2.6647 -0.2645 4.7321 18 7 2.7435 -0.9721 5.8662 19 6 1.7750 -1.7983 6.2097 20 8 1.8974 -2.4934 7.3644 21 7 0.6850 -1.9794 5.4723 22 6 0.5093 -1.3283 4.3332 23 8 -0.6037 -1.5188 3.5897 24 6 1.5169 -0.4263 3.9144 25 6 1.4122 0.3004 2.7253 26 1 -0.3633 0.6623 0.7858 27 1 -0.3633 0.3495 -0.9665 28 1 -0.3633 -1.0117 0.1805 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.8138 -0.0930 -3.1840 32 1 4.3676 1.9419 3.0007 33 1 1.5299 -2.0416 8.1363 34 1 -0.5242 -2.2280 2.9373 35 1 0.5501 0.1975 2.0831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344467166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:07 Heat of formation + Delta-G solvation = -14.614326 kcal Electronic energy + Delta-G solvation = -24846.481909 eV Core-core repulsion = 21039.666734 eV Total energy + Delta-G solvation = -3806.815175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00908 -41.07788 -39.69292 -39.44064 -37.42405 -37.18462 -34.98766 -33.97561 -33.30218 -31.69765 -31.32299 -27.45393 -26.52632 -25.80107 -24.05667 -23.98831 -22.36202 -21.18663 -20.23210 -19.37447 -19.13919 -18.72532 -17.88185 -17.69207 -17.17286 -16.65888 -16.41800 -16.16133 -15.87875 -15.61929 -15.31111 -15.03184 -14.32249 -14.04122 -13.78690 -13.61234 -13.42741 -13.16126 -13.02406 -12.90679 -12.61308 -12.39109 -12.30323 -12.09238 -12.05396 -11.73016 -11.59377 -10.97055 -10.81261 -10.56188 -10.29589 -9.92709 -9.81278 -8.27551 -5.89412 -1.35617 -0.90532 0.33842 1.20609 1.43371 1.47485 1.55168 1.58445 1.96011 2.17638 2.23524 2.60574 2.67239 2.81749 3.05307 3.13012 3.34466 3.52988 3.71028 3.91813 4.11424 4.24863 4.37160 4.54592 4.67863 4.87880 4.89573 5.02461 5.15026 5.37238 5.37410 5.60210 5.95498 6.03789 6.21237 6.35959 6.41672 6.46996 6.81001 7.09727 7.35792 7.90829 8.56291 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.026119 B = 0.004245 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.755195 B = 6594.183671 C = 7394.036829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.102 3.898 3 N -0.426 5.426 4 C -0.332 4.332 5 H 0.081 0.919 6 C 0.006 3.994 7 N -0.860 5.860 8 Si 0.990 3.010 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.272 1.272 12 C 0.458 3.542 13 O -0.632 6.632 14 C -0.172 4.172 15 C 0.229 3.771 16 N -0.492 5.492 17 C 0.361 3.639 18 N -0.540 5.540 19 C 0.552 3.448 20 O -0.453 6.453 21 N -0.564 5.564 22 C 0.474 3.526 23 O -0.459 6.459 24 C -0.245 4.245 25 C 0.017 3.983 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.277 0.723 32 H 0.187 0.813 33 H 0.438 0.562 34 H 0.443 0.557 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -8.699 8.183 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 N -0.140 5.140 4 C -0.460 4.460 5 H 0.099 0.901 6 C -0.197 4.197 7 N -0.499 5.499 8 Si 0.814 3.186 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.197 1.197 12 C 0.247 3.753 13 O -0.522 6.522 14 C -0.178 4.178 15 C 0.055 3.945 16 N -0.202 5.202 17 C 0.116 3.884 18 N -0.270 5.270 19 C 0.245 3.755 20 O -0.260 6.260 21 N -0.302 5.302 22 C 0.272 3.728 23 O -0.271 6.271 24 C -0.255 4.255 25 C -0.012 4.012 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.204 0.796 33 H 0.303 0.697 34 H 0.310 0.690 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.164 -8.804 9.534 13.357 hybrid contribution -0.613 0.853 -1.895 2.167 sum -3.777 -7.951 7.638 11.655 Atomic orbital electron populations 1.22235 0.94656 1.01092 1.02288 1.22203 0.96142 0.81756 1.01925 1.44030 1.51534 1.12963 1.05488 1.19837 1.43440 0.98385 0.84341 0.90083 1.25918 0.94899 0.97103 1.01787 1.70114 1.34485 1.16826 1.28483 0.84910 0.78333 0.78124 0.77225 1.20430 1.19419 1.19700 1.17826 0.86889 0.87061 0.83489 1.90614 1.58322 1.17229 1.85995 1.21089 0.98032 1.00474 0.98201 1.23398 0.95262 0.90668 0.85191 1.67681 1.27264 1.08182 1.17122 1.19148 0.88614 0.91752 0.88852 1.67819 1.31712 1.09705 1.17805 1.19811 0.82786 0.84199 0.88755 1.84643 1.82447 1.43719 1.15221 1.67566 1.24498 1.29180 1.08958 1.19190 0.82494 0.84985 0.86142 1.84566 1.30391 1.60121 1.52053 1.20361 0.98711 1.06383 1.00015 1.22526 0.97866 0.88207 0.92559 0.95254 0.90582 0.90155 0.87649 0.92708 0.91210 0.79579 0.69689 0.68954 0.80314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 8.56 71.98 0.62 -4.27 16 2 C 0.10 3.89 4.89 86.38 0.42 4.31 16 3 N -0.43 -19.87 2.64 -639.15 -1.69 -21.55 16 4 C -0.33 -17.03 9.49 84.09 0.80 -16.23 16 5 H 0.08 4.55 7.20 -2.91 -0.02 4.53 16 6 C 0.01 0.27 5.34 84.95 0.45 0.73 16 7 N -0.86 -37.46 7.26 21.68 0.16 -37.30 16 8 Si 0.99 38.02 29.57 68.60 2.03 40.05 16 9 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 11 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 12 C 0.46 21.30 7.23 86.69 0.63 21.92 16 13 O -0.63 -34.30 16.58 -4.10 -0.07 -34.36 16 14 C -0.17 -6.39 5.13 -19.98 -0.10 -6.49 16 15 C 0.23 7.97 10.81 85.35 0.92 8.89 16 16 N -0.49 -17.29 10.40 -192.76 -2.01 -19.29 16 17 C 0.36 12.03 7.66 135.06 1.03 13.06 16 18 N -0.54 -17.10 10.52 -312.60 -3.29 -20.39 16 19 C 0.55 14.57 8.64 180.55 1.56 16.13 16 20 O -0.45 -9.05 13.63 -86.23 -1.18 -10.22 16 21 N -0.56 -14.29 10.45 -425.25 -4.45 -18.74 16 22 C 0.47 11.48 7.89 85.43 0.67 12.15 16 23 O -0.46 -8.12 12.95 -84.86 -1.10 -9.21 16 24 C -0.25 -7.14 5.75 -21.20 -0.12 -7.27 16 25 C 0.02 0.53 7.06 22.95 0.16 0.69 16 26 H 0.03 0.97 6.53 -2.39 -0.02 0.95 16 27 H 0.08 3.05 5.88 -2.39 -0.01 3.03 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.11 4.43 5.72 -2.39 -0.01 4.42 16 30 H 0.05 1.82 4.98 -2.38 -0.01 1.81 16 31 H 0.28 11.23 8.31 -92.71 -0.77 10.46 16 32 H 0.19 6.00 8.06 -2.91 -0.02 5.97 16 33 H 0.44 3.72 9.06 -74.06 -0.67 3.05 16 34 H 0.44 3.09 9.06 -74.06 -0.67 2.42 16 35 H 0.18 5.14 3.55 -2.91 -0.01 5.13 16 Total: -1.00 -68.13 300.25 -4.66 -72.78 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -0.12 Total: 14.62 kcal Atomic # 6 Polarization: 36.58 SS G_CDS: 7.05 Total: 43.63 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -11.27 Total: -117.27 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -2.34 Total: -53.80 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -68.13 -4.66 -72.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344467166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds