Wall clock time and date at job start Fri Apr 10 2020 14:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47297 * 119.99905 * 9 7 5 12 12 H 1.48506 * 109.47188 * 240.00204 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.29953 * 125.30076 * 269.69570 * 18 17 16 20 20 O 1.41879 * 107.41437 * 179.89130 * 19 18 17 21 21 N 1.41880 * 106.38538 * 0.36313 * 20 19 18 22 22 C 1.29956 * 107.41075 * 359.78374 * 21 20 19 23 23 C 1.50703 * 125.29787 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 26 26 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 28 28 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 29 29 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 30 30 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 31 31 H 0.96999 * 119.99728 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 33 33 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 34 34 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 35 35 H 1.09007 * 109.46869 * 269.99449 * 23 22 21 36 36 H 1.08993 * 109.47499 * 29.99831 * 23 22 21 37 37 H 1.08997 * 109.46935 * 150.00405 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 3.0285 3.1868 -3.6911 9 14 5.5093 1.9641 -3.8513 10 1 6.2448 1.0152 -2.9772 11 1 5.3018 1.3473 -5.1861 12 1 6.2981 3.2135 -4.0004 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.3869 2.2654 1.4754 19 7 6.9217 3.1846 2.2223 20 8 8.1883 2.7048 2.6447 21 7 8.3433 1.4196 2.0641 22 6 7.2698 1.1722 1.3748 23 6 7.0097 -0.0881 0.5905 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3618 1.8097 -1.9453 30 1 2.0923 3.1802 -1.0757 31 1 3.2803 3.5893 -4.5369 32 1 4.2771 1.2773 2.4782 33 1 5.0449 1.7849 -0.1128 34 1 4.8084 3.4005 0.5956 35 1 7.3808 0.0341 -0.4272 36 1 7.5221 -0.9243 1.0660 37 1 5.9381 -0.2856 0.5651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800064651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:01 Heat of formation + Delta-G solvation = 11.931155 kcal Electronic energy + Delta-G solvation = -24137.373357 eV Core-core repulsion = 20467.153232 eV Total energy + Delta-G solvation = -3670.220125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.104 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51544 -36.83913 -36.23704 -35.79304 -35.34584 -33.98353 -32.88530 -32.38293 -30.05726 -28.83345 -26.98076 -26.50598 -23.28394 -22.38767 -21.85458 -20.79094 -19.08650 -17.53054 -17.19401 -16.78767 -16.59104 -16.20477 -15.64454 -15.30213 -14.60462 -14.50236 -13.97392 -13.80579 -13.57099 -13.48958 -13.29765 -13.00976 -12.77378 -12.21525 -12.14854 -12.01971 -11.80868 -11.77973 -11.57487 -11.49744 -11.43812 -11.19339 -11.08502 -10.87220 -10.68367 -10.62218 -10.54492 -10.17275 -9.96573 -9.31115 -8.66222 -8.21680 -6.27845 -4.36613 0.43328 1.09126 1.89244 2.62721 3.08428 3.11372 3.15329 3.22170 3.41126 3.80944 4.00243 4.18847 4.58584 4.89690 4.93230 5.06241 5.11250 5.27060 5.30225 5.39941 5.55574 5.65561 5.70734 5.79070 5.81970 5.97379 6.04482 6.23759 6.55890 6.59938 6.88743 7.00167 7.24508 7.29679 7.52469 7.68517 7.97079 8.66826 9.29685 10.79747 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.007759 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.757098 B = 3607.668280 C = 5234.587830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.130 3.870 3 N -0.990 5.990 4 C 0.241 3.759 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.885 3.115 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 S 2.787 3.213 14 O -0.993 6.993 15 O -0.973 6.973 16 N -1.127 6.127 17 C 0.176 3.824 18 C 0.072 3.928 19 N -0.256 5.256 20 O 0.020 5.980 21 N -0.284 5.284 22 C 0.088 3.912 23 C -0.098 4.098 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.409 0.591 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -8.152 5.904 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.119 3.881 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.712 3.288 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 S 2.795 3.205 14 O -0.977 6.977 15 O -0.956 6.956 16 N -0.886 5.886 17 C 0.049 3.951 18 C -0.112 4.112 19 N 0.000 5.000 20 O -0.120 6.120 21 N -0.031 5.031 22 C -0.095 4.095 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.176 -6.673 6.962 10.153 hybrid contribution 0.924 -0.886 -0.952 1.596 sum 4.100 -7.559 6.010 10.491 Atomic orbital electron populations 1.22207 0.96884 1.01465 1.02456 1.21000 0.93763 0.82640 1.02220 1.57737 1.78239 1.23154 1.24077 1.19259 0.97432 0.92417 0.79001 1.21571 1.02383 1.28558 1.06431 0.91483 1.24944 0.97102 0.94683 0.96810 1.69923 1.35785 1.29095 1.16947 0.86663 0.83883 0.78430 0.79780 1.19437 1.20728 1.20740 1.01780 0.72244 0.73758 0.72751 1.93570 1.69736 1.76291 1.58079 1.93595 1.85454 1.30929 1.85661 1.56094 1.25294 1.68549 1.38616 1.20347 0.78587 1.03832 0.92287 1.24816 0.99735 0.90554 0.96124 1.80021 0.92960 1.17955 1.09030 1.93379 1.29783 1.24929 1.63951 1.79912 1.18224 0.96252 1.08673 1.24659 0.90084 0.98645 0.96103 1.20673 1.05175 0.90296 0.99406 0.92650 0.92015 0.92310 0.90005 0.91810 0.94065 0.92940 0.92385 0.75865 0.85245 0.87192 0.88130 0.89238 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.13 1.93 6.06 -4.05 -0.02 1.91 16 3 N -0.99 -17.60 2.82 -115.67 -0.33 -17.93 16 4 C 0.24 5.23 5.43 -5.19 -0.03 5.20 16 5 C -0.55 -12.14 8.06 -34.44 -0.28 -12.42 16 6 H 0.07 1.32 5.82 -52.49 -0.31 1.02 16 7 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.88 -22.95 13.29 55.43 0.74 -22.21 16 9 Si 0.89 18.18 29.54 -169.99 -5.02 13.16 16 10 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 S 2.79 49.52 6.10 -107.50 -0.66 48.86 16 14 O -0.99 -18.41 17.11 -57.17 -0.98 -19.39 16 15 O -0.97 -20.97 16.15 -57.17 -0.92 -21.90 16 16 N -1.13 -16.30 6.05 -11.66 -0.07 -16.37 16 17 C 0.18 2.69 6.06 -5.19 -0.03 2.66 16 18 C 0.07 1.06 6.58 -82.38 -0.54 0.52 16 19 N -0.26 -4.20 12.98 33.74 0.44 -3.76 16 20 O 0.02 0.33 13.71 12.02 0.16 0.50 16 21 N -0.28 -4.18 12.98 33.74 0.44 -3.74 16 22 C 0.09 1.14 7.19 -82.38 -0.59 0.55 16 23 C -0.10 -0.92 10.05 36.01 0.36 -0.56 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 28 H 0.06 0.82 7.61 -51.93 -0.40 0.43 16 29 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.05 1.28 6.91 -51.93 -0.36 0.93 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.41 4.86 8.64 -34.47 -0.30 4.57 16 33 H 0.13 1.96 4.49 -51.93 -0.23 1.73 16 34 H 0.11 1.86 7.74 -51.93 -0.40 1.46 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.85 7.77 -51.93 -0.40 0.45 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -29.55 331.42 -6.54 -36.09 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.49 Total: 4.31 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.85 Total: -2.62 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: 1.22 Total: -64.01 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.74 Total: -40.79 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 16 Polarization: 49.52 SS G_CDS: -0.66 Total: 48.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.55 -6.54 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800064651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.026 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds