Wall clock time and date at job start Fri Apr 10 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47239 * 239.99972 * 3 2 1 5 5 H 1.48497 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46837 * 119.99867 * 3 2 1 7 7 C 1.37878 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99838 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47294 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00418 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99352 * 0.02562 * 11 10 9 13 13 C 1.50690 * 120.00221 * 180.02562 * 11 10 9 14 14 N 1.46505 * 109.47088 * 180.02562 * 13 11 10 15 15 N 1.39968 * 119.88998 * 269.99898 * 14 13 11 16 16 C 1.31023 * 120.73308 * 179.97438 * 15 14 13 17 17 N 1.40053 * 119.75775 * 179.97438 * 16 15 14 18 18 C 1.34756 * 126.84026 * 359.97438 * 17 16 15 19 19 N 1.30844 * 108.02790 * 180.02562 * 18 17 16 20 20 C 1.33274 * 109.84029 * 0.02562 * 19 18 17 21 21 N 1.30738 * 109.00755 * 359.97438 * 20 19 18 22 22 C 1.40784 * 120.48310 * 0.25659 * 16 15 14 23 23 C 1.35991 * 119.73866 * 359.50411 * 22 16 15 24 24 C 1.34822 * 119.89004 * 90.02424 * 14 13 11 25 25 O 1.22072 * 120.23615 * 359.97438 * 24 14 13 26 26 H 0.96997 * 120.00346 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47379 * 59.99618 * 9 7 2 28 28 H 1.09000 * 109.47238 * 299.99536 * 9 7 2 29 29 H 0.97003 * 119.99907 * 0.02562 * 10 9 7 30 30 H 1.08998 * 109.47365 * 60.00864 * 13 11 10 31 31 H 1.08997 * 109.47737 * 300.00532 * 13 11 10 32 32 H 1.08001 * 125.99082 * 0.03709 * 18 17 16 33 33 H 1.07998 * 125.49339 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.12886 * 179.71807 * 22 16 15 35 35 H 1.08003 * 120.35565 * 180.20405 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0287 0.0016 14 7 2.0007 -7.2975 0.0015 15 7 1.6515 -7.9014 1.2150 16 6 0.9961 -9.0357 1.2341 17 7 0.6575 -9.6223 2.4600 18 6 0.9350 -9.1436 3.6888 19 7 0.4511 -9.9823 4.5688 20 6 -0.1381 -11.0023 3.9454 21 7 -0.0380 -10.8269 2.6537 22 6 0.6348 -9.6722 0.0315 23 6 0.9600 -9.1001 -1.1586 24 6 1.6657 -7.8798 -1.1674 25 8 1.9702 -7.3533 -2.2259 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 3.1568 -3.4353 0.0009 30 1 3.3597 -5.9706 0.8917 31 1 3.3600 -5.9713 -0.8882 32 1 1.4639 -8.2281 3.9087 33 1 -0.6204 -11.8387 4.4292 34 1 0.0986 -10.6094 0.0540 35 1 0.6849 -9.5781 -2.0872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040119268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:51 Heat of formation + Delta-G solvation = 82.080697 kcal Electronic energy + Delta-G solvation = -23538.713792 eV Core-core repulsion = 19768.384380 eV Total energy + Delta-G solvation = -3770.329413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.51447 -42.33551 -40.43697 -38.93707 -36.41319 -36.00799 -34.48598 -34.34769 -32.82828 -31.91050 -30.31391 -28.64571 -26.43735 -25.31409 -24.49075 -23.26142 -22.84843 -21.68461 -20.20971 -19.45824 -19.03146 -18.02844 -17.92858 -17.58429 -17.24034 -16.81084 -16.46608 -16.42953 -16.26113 -15.66752 -15.21588 -14.99449 -14.68944 -14.66262 -14.31192 -14.29221 -14.03749 -13.61424 -13.22121 -12.97768 -12.69462 -12.65211 -12.29719 -12.21873 -11.54448 -11.34083 -11.32478 -11.18198 -11.06781 -10.95083 -10.81940 -9.94277 -9.79308 -8.30895 -6.48029 -1.00132 -0.17133 0.02782 0.91891 1.23825 1.43153 1.47146 1.55329 1.56413 1.78673 2.03039 2.31687 2.52746 2.79780 2.93974 3.04340 3.32472 3.52993 3.70494 3.75937 3.93608 4.08653 4.13579 4.29521 4.44163 4.65490 4.72232 4.98857 5.05857 5.18678 5.23471 5.41270 5.53045 5.61767 5.80522 6.11133 6.48218 6.61677 6.75937 6.82591 7.19624 7.35926 8.81168 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.003046 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.358976 B = 9191.064703 C =10124.842847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.269 3.731 10 N -0.697 5.697 11 C 0.484 3.516 12 O -0.597 6.597 13 C 0.116 3.884 14 N -0.377 5.377 15 N -0.244 5.244 16 C 0.346 3.654 17 N -0.337 5.337 18 C 0.294 3.706 19 N -0.552 5.552 20 C 0.226 3.774 21 N -0.321 5.321 22 C -0.067 4.067 23 C -0.134 4.134 24 C 0.488 3.512 25 O -0.561 6.561 26 H 0.269 0.731 27 H -0.017 1.017 28 H -0.010 1.010 29 H 0.414 0.586 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.246 0.754 33 H 0.267 0.733 34 H 0.192 0.808 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -23.460 5.571 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.594 4.594 8 H 0.107 0.893 9 C 0.146 3.854 10 N -0.348 5.348 11 C 0.270 3.730 12 O -0.479 6.479 13 C -0.009 4.009 14 N -0.196 5.196 15 N -0.064 5.064 16 C 0.079 3.921 17 N -0.124 5.124 18 C -0.002 4.002 19 N -0.278 5.278 20 C -0.076 4.076 21 N -0.146 5.146 22 C -0.091 4.091 23 C -0.163 4.163 24 C 0.284 3.716 25 O -0.439 6.439 26 H 0.077 0.923 27 H 0.001 0.999 28 H 0.008 0.992 29 H 0.251 0.749 30 H 0.186 0.814 31 H 0.170 0.830 32 H 0.262 0.738 33 H 0.283 0.717 34 H 0.209 0.791 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.149 -22.906 5.275 24.297 hybrid contribution -0.120 0.969 -0.602 1.147 sum 6.029 -21.937 4.673 23.225 Atomic orbital electron populations 1.70131 1.08385 1.28683 1.49916 1.26091 0.95752 1.04026 0.93796 0.85191 0.77885 0.76448 0.79608 1.18685 1.21285 1.18340 1.21596 0.94489 0.90323 1.52998 0.89349 1.18544 0.88625 0.84212 0.94012 1.46064 1.11626 1.04952 1.72141 1.21502 0.89920 0.85417 0.76194 1.90668 1.19305 1.85450 1.52476 1.21775 0.92318 0.76708 1.10059 1.48805 1.49339 1.20351 1.01113 1.74646 1.14594 1.08536 1.08602 1.18505 0.97053 0.91108 0.85407 1.47328 1.43001 1.18168 1.03940 1.27034 0.94490 0.99614 0.79082 1.70840 1.18444 1.05433 1.33095 1.27170 0.95230 0.98165 0.87066 1.78208 1.18017 0.97967 1.20454 1.21946 0.96706 1.01950 0.88500 1.22888 0.98222 0.93387 1.01818 1.18291 0.81898 0.87986 0.83379 1.91011 1.56660 1.66844 1.29433 0.92252 0.99927 0.99226 0.74941 0.81374 0.83050 0.73768 0.71712 0.79122 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.99 41.95 29.54 68.60 2.03 43.98 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 14.69 5.43 85.63 0.46 15.15 16 10 N -0.70 -28.55 5.55 -466.80 -2.59 -31.14 16 11 C 0.48 19.12 7.90 87.65 0.69 19.81 16 12 O -0.60 -30.07 16.43 -3.03 -0.05 -30.12 16 13 C 0.12 3.03 6.19 85.63 0.53 3.56 16 14 N -0.38 -10.55 3.00 -476.11 -1.43 -11.98 16 15 N -0.24 -5.99 11.10 -54.37 -0.60 -6.60 16 16 C 0.35 7.38 7.68 133.51 1.03 8.40 16 17 N -0.34 -6.58 3.81 -195.35 -0.75 -7.33 16 18 C 0.29 5.28 12.26 180.25 2.21 7.49 16 19 N -0.55 -10.08 11.19 -203.71 -2.28 -12.36 16 20 C 0.23 3.20 13.03 180.75 2.35 5.55 16 21 N -0.32 -5.64 12.06 -61.21 -0.74 -6.38 16 22 C -0.07 -1.17 9.67 22.37 0.22 -0.95 16 23 C -0.13 -2.69 10.00 22.42 0.22 -2.47 16 24 C 0.49 14.30 7.50 84.91 0.64 14.94 16 25 O -0.56 -20.26 16.71 -5.55 -0.09 -20.36 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.41 13.26 8.32 -92.71 -0.77 12.49 16 30 H 0.17 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.15 3.44 7.42 -2.39 -0.02 3.42 16 32 H 0.25 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.27 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.19 2.21 7.76 -2.91 -0.02 2.19 16 35 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -85.24 326.39 3.23 -82.01 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.39 Total: 13.92 kcal Atomic # 6 Polarization: 33.43 SS G_CDS: 9.05 Total: 42.49 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -8.10 Total: -131.92 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.14 Total: -50.47 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -85.24 3.23 -82.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040119268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.092 kcal (2) G-P(sol) polarization free energy of solvation -85.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds