Wall clock time and date at job start Fri Apr 10 2020 14:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00398 * 2 1 4 4 H 1.48508 * 109.46975 * 270.00095 * 3 2 1 5 5 H 1.48503 * 109.47055 * 29.99356 * 3 2 1 6 6 H 1.48495 * 109.47667 * 150.00099 * 3 2 1 7 7 C 1.38951 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00520 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99967 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47316 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99973 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00151 * 359.73121 * 14 13 12 16 16 N 1.34784 * 119.99935 * 180.02562 * 14 13 12 17 17 C 1.39407 * 119.99973 * 179.72551 * 16 14 13 18 18 N 1.31304 * 126.32420 * 0.02886 * 17 16 14 19 19 N 1.28659 * 110.29348 * 179.97438 * 18 17 16 20 20 C 1.32094 * 109.64479 * 0.02562 * 19 18 17 21 21 C 1.40913 * 133.49530 * 180.02562 * 20 19 18 22 22 C 1.35943 * 119.23986 * 179.97438 * 21 20 19 23 23 C 1.40695 * 119.83589 * 359.97438 * 22 21 20 24 24 C 1.34844 * 120.41789 * 0.02562 * 23 22 21 25 25 N 1.36306 * 126.32059 * 179.71491 * 17 16 14 26 26 H 0.97005 * 120.00033 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99609 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46987 * 59.99473 * 12 10 9 29 29 H 1.08997 * 109.46849 * 300.00235 * 12 10 9 30 30 H 0.97004 * 120.00009 * 0.02562 * 13 12 10 31 31 H 0.97005 * 119.99846 * 359.72693 * 16 14 13 32 32 H 1.08001 * 120.38099 * 359.97438 * 21 20 19 33 33 H 1.08001 * 120.08402 * 179.97438 * 22 21 20 34 34 H 1.07993 * 119.79028 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.76741 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3707 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3740 -3.9981 0.0013 15 8 8.1641 -3.0740 -0.0045 16 7 7.8233 -5.2689 0.0013 17 6 9.1939 -5.5236 -0.0049 18 7 10.1518 -4.6257 -0.0106 19 7 11.3027 -5.2010 -0.0148 20 6 11.1436 -6.5123 -0.0126 21 6 12.0416 -7.5982 -0.0147 22 6 11.5507 -8.8659 -0.0107 23 6 10.1598 -9.0779 -0.0040 24 6 9.3097 -8.0312 -0.0021 25 7 9.7870 -6.7509 -0.0002 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9240 -1.8567 0.8911 29 1 5.9239 -1.8568 -0.8889 30 1 5.4186 -4.4891 0.0016 31 1 7.1929 -6.0062 0.0057 32 1 13.1077 -7.4254 -0.0194 33 1 12.2266 -9.7082 -0.0126 34 1 9.7706 -10.0852 -0.0013 35 1 8.2440 -8.2060 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349379499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:26 Heat of formation + Delta-G solvation = 75.108761 kcal Electronic energy + Delta-G solvation = -23119.351450 eV Core-core repulsion = 19348.719711 eV Total energy + Delta-G solvation = -3770.631739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.77524 -40.24872 -38.59971 -38.33935 -35.58584 -34.62636 -33.87544 -33.68415 -31.85186 -31.39195 -29.27890 -27.72938 -24.67273 -24.54370 -23.69334 -22.97603 -20.77037 -19.75265 -19.43702 -18.95669 -18.05302 -17.60779 -17.06358 -16.91597 -15.94022 -15.74297 -15.64896 -15.22308 -15.06848 -14.80938 -14.32074 -14.18273 -13.19448 -13.03803 -12.93411 -12.56600 -12.53168 -12.38032 -12.22425 -11.86242 -11.75878 -11.26317 -10.76054 -10.75662 -10.66481 -10.28274 -10.09892 -9.74188 -9.66552 -9.05970 -8.84352 -8.35192 -8.01608 -6.44811 -3.97783 0.22875 0.77605 1.33229 2.39706 2.48996 2.97947 2.98349 3.03099 3.11431 3.20581 3.50845 3.67039 3.83274 4.00856 4.06228 4.29665 4.42082 4.48645 4.52064 4.97733 5.09225 5.10204 5.34936 5.45112 5.57349 5.65310 5.72210 5.76196 5.77548 6.03435 6.38683 6.49657 6.55640 7.39833 7.72703 7.95510 8.32522 8.40266 8.48149 8.76905 9.25037 9.57364 10.67053 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.041622 B = 0.002440 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.556116 B =11473.799035 C =12131.199859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.581 6.581 12 C 0.126 3.874 13 N -0.714 5.714 14 C 0.707 3.293 15 O -0.533 6.533 16 N -0.644 5.644 17 C 0.402 3.598 18 N -0.224 5.224 19 N -0.272 5.272 20 C 0.185 3.815 21 C -0.067 4.067 22 C -0.098 4.098 23 C -0.135 4.135 24 C 0.060 3.940 25 N -0.410 5.410 26 H 0.276 0.724 27 H 0.375 0.625 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.414 0.586 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.217 -18.461 -0.010 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.466 6.466 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.406 3.594 15 O -0.404 6.404 16 N -0.301 5.301 17 C 0.050 3.950 18 N -0.070 5.070 19 N -0.117 5.117 20 C -0.065 4.065 21 C -0.088 4.088 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.061 4.061 25 N -0.097 5.097 26 H 0.087 0.913 27 H 0.209 0.791 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.251 0.749 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 20.820 -16.485 -0.009 26.556 hybrid contribution -0.951 -0.721 0.028 1.194 sum 19.869 -17.207 0.019 26.284 Atomic orbital electron populations 1.69613 1.05741 1.27914 1.47856 1.25075 0.95550 0.98248 0.97001 0.86671 0.79962 0.83665 0.79226 1.19321 1.19939 1.19114 1.19429 0.78883 0.96807 1.48850 0.86063 1.42105 1.07730 1.06142 1.65096 1.19561 0.87888 0.84936 0.85293 1.90530 1.69187 1.30902 1.55979 1.20912 0.93633 0.81830 1.03849 1.44614 1.04127 1.10013 1.78459 1.15493 0.83300 0.81529 0.79089 1.91095 1.54207 1.41145 1.53926 1.41486 1.00914 1.09302 1.78378 1.20547 0.87313 0.79943 1.07191 1.75063 0.92674 1.21546 1.17683 1.74979 1.16208 1.00630 1.19860 1.22089 0.81106 0.95448 1.07882 1.20290 0.99412 0.88623 1.00524 1.21158 0.95291 0.97043 0.98752 1.20906 0.93345 0.98783 1.02657 1.21653 1.00880 0.80801 1.02751 1.43493 1.09155 1.05688 1.51395 0.91317 0.79124 0.89348 0.89322 0.75256 0.74930 0.82421 0.83564 0.82710 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.59 13.96 55.50 0.77 -23.81 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.80 27.74 -169.99 -4.71 14.08 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 7 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 8 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 9 N -0.57 -13.00 5.09 -10.96 -0.06 -13.06 16 10 C 0.44 9.25 7.85 -10.98 -0.09 9.16 16 11 O -0.58 -14.04 15.24 5.55 0.08 -13.96 16 12 C 0.13 2.09 6.15 -5.19 -0.03 2.06 16 13 N -0.71 -10.71 5.53 -66.41 -0.37 -11.08 16 14 C 0.71 11.02 8.53 -86.91 -0.74 10.28 16 15 O -0.53 -10.45 15.07 5.29 0.08 -10.37 16 16 N -0.64 -7.76 5.42 -16.70 -0.09 -7.85 16 17 C 0.40 5.59 8.72 -317.76 -2.77 2.82 16 18 N -0.22 -3.94 10.43 30.47 0.32 -3.62 16 19 N -0.27 -4.29 12.29 31.20 0.38 -3.91 16 20 C 0.19 2.18 7.93 -155.81 -1.24 0.94 16 21 C -0.07 -0.48 10.11 -39.39 -0.40 -0.88 16 22 C -0.10 -0.43 10.06 -39.48 -0.40 -0.83 16 23 C -0.13 -0.55 9.98 -39.86 -0.40 -0.94 16 24 C 0.06 0.37 11.00 -16.62 -0.18 0.18 16 25 N -0.41 -4.35 2.98 -63.01 -0.19 -4.53 16 26 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.38 7.53 5.76 -40.82 -0.24 7.30 16 28 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.41 5.72 7.45 -40.82 -0.30 5.41 16 31 H 0.41 3.19 8.84 -40.82 -0.36 2.83 16 32 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 34 H 0.16 0.13 8.06 -52.49 -0.42 -0.30 16 35 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -37.56 316.73 -8.48 -46.04 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -2.99 Total: 11.94 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: -6.49 Total: 15.36 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: 0.77 Total: -67.87 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.16 Total: -24.33 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.08 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -37.56 -8.48 -46.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349379499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.150 kcal (2) G-P(sol) polarization free energy of solvation -37.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds