Wall clock time and date at job start Fri Apr 10 2020 14:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00398 * 2 1 4 4 H 1.48508 * 109.46975 * 270.00095 * 3 2 1 5 5 H 1.48503 * 109.47055 * 29.99356 * 3 2 1 6 6 H 1.48495 * 109.47667 * 150.00099 * 3 2 1 7 7 C 1.38951 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00520 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99967 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47316 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99973 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00151 * 359.73121 * 14 13 12 16 16 N 1.34784 * 119.99935 * 180.02562 * 14 13 12 17 17 C 1.39407 * 119.99973 * 179.72551 * 16 14 13 18 18 N 1.31304 * 126.32420 * 0.02886 * 17 16 14 19 19 N 1.28659 * 110.29348 * 179.97438 * 18 17 16 20 20 C 1.32094 * 109.64479 * 0.02562 * 19 18 17 21 21 C 1.40913 * 133.49530 * 180.02562 * 20 19 18 22 22 C 1.35943 * 119.23986 * 179.97438 * 21 20 19 23 23 C 1.40695 * 119.83589 * 359.97438 * 22 21 20 24 24 C 1.34844 * 120.41789 * 0.02562 * 23 22 21 25 25 N 1.36306 * 126.32059 * 179.71491 * 17 16 14 26 26 H 0.97005 * 120.00033 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99609 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.46987 * 59.99473 * 12 10 9 29 29 H 1.08997 * 109.46849 * 300.00235 * 12 10 9 30 30 H 0.97004 * 120.00009 * 0.02562 * 13 12 10 31 31 H 0.97005 * 119.99846 * 359.72693 * 16 14 13 32 32 H 1.08001 * 120.38099 * 359.97438 * 21 20 19 33 33 H 1.08001 * 120.08402 * 179.97438 * 22 21 20 34 34 H 1.07993 * 119.79028 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.76741 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3707 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3740 -3.9981 0.0013 15 8 8.1641 -3.0740 -0.0045 16 7 7.8233 -5.2689 0.0013 17 6 9.1939 -5.5236 -0.0049 18 7 10.1518 -4.6257 -0.0106 19 7 11.3027 -5.2010 -0.0148 20 6 11.1436 -6.5123 -0.0126 21 6 12.0416 -7.5982 -0.0147 22 6 11.5507 -8.8659 -0.0107 23 6 10.1598 -9.0779 -0.0040 24 6 9.3097 -8.0312 -0.0021 25 7 9.7870 -6.7509 -0.0002 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9240 -1.8567 0.8911 29 1 5.9239 -1.8568 -0.8889 30 1 5.4186 -4.4891 0.0016 31 1 7.1929 -6.0062 0.0057 32 1 13.1077 -7.4254 -0.0194 33 1 12.2266 -9.7082 -0.0126 34 1 9.7706 -10.0852 -0.0013 35 1 8.2440 -8.2060 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349379499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:25 Heat of formation + Delta-G solvation = 47.055651 kcal Electronic energy + Delta-G solvation = -23120.567924 eV Core-core repulsion = 19348.719711 eV Total energy + Delta-G solvation = -3771.848213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.107 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -44.60343 -41.49201 -40.24361 -39.07249 -36.64536 -36.28204 -35.44699 -34.44328 -33.83239 -32.04697 -30.25774 -29.07688 -26.37398 -25.24408 -24.41946 -24.00662 -21.85245 -21.49453 -20.64117 -20.34385 -19.37382 -18.40411 -17.96387 -17.62646 -17.44952 -16.91340 -16.83388 -16.48216 -16.04179 -15.81815 -15.81651 -15.53629 -14.93236 -14.34136 -14.04311 -13.93609 -13.59503 -13.43668 -13.15482 -12.99345 -12.79693 -12.48337 -12.44433 -12.00539 -11.76201 -11.58206 -11.50432 -11.48622 -10.67120 -10.49929 -10.33684 -10.23512 -8.80626 -8.45779 -6.07497 -0.26693 0.08027 0.40500 1.31788 1.34636 1.43965 1.46179 1.61430 1.78138 2.07732 2.20313 2.39742 2.58394 2.94903 3.10791 3.16352 3.48643 3.69135 3.89313 3.96399 4.11800 4.23115 4.40864 4.41159 4.65604 4.78420 5.02105 5.06530 5.09585 5.21586 5.46008 5.50588 5.54819 5.86333 5.87893 6.47812 6.61954 6.77809 7.18106 7.29558 7.52806 7.76500 8.70306 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.041622 B = 0.002440 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.556116 B =11473.799035 C =12131.199859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.329 4.329 8 H 0.066 0.934 9 N -0.577 5.577 10 C 0.448 3.552 11 O -0.612 6.612 12 C 0.137 3.863 13 N -0.709 5.709 14 C 0.712 3.288 15 O -0.575 6.575 16 N -0.625 5.625 17 C 0.381 3.619 18 N -0.281 5.281 19 N -0.335 5.335 20 C 0.190 3.810 21 C -0.103 4.103 22 C -0.061 4.061 23 C -0.119 4.119 24 C 0.036 3.964 25 N -0.404 5.404 26 H 0.281 0.719 27 H 0.392 0.608 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.416 0.584 31 H 0.434 0.566 32 H 0.174 0.826 33 H 0.191 0.809 34 H 0.201 0.799 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.407 -20.713 0.032 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.458 4.458 8 H 0.084 0.916 9 N -0.217 5.217 10 C 0.236 3.764 11 O -0.498 6.498 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.411 3.589 15 O -0.449 6.449 16 N -0.283 5.283 17 C 0.027 3.973 18 N -0.125 5.125 19 N -0.179 5.179 20 C -0.061 4.061 21 C -0.124 4.124 22 C -0.086 4.086 23 C -0.140 4.140 24 C -0.084 4.084 25 N -0.090 5.090 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.254 0.746 31 H 0.274 0.726 32 H 0.191 0.809 33 H 0.208 0.792 34 H 0.218 0.782 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 23.028 -18.813 0.035 29.736 hybrid contribution -1.581 -0.474 0.011 1.650 sum 21.447 -19.287 0.046 28.844 Atomic orbital electron populations 1.69769 1.07967 1.29430 1.49253 1.26035 0.96413 1.02518 0.95779 0.85483 0.79626 0.77234 0.80048 1.18170 1.19917 1.15610 1.19024 0.80863 0.95292 1.50663 0.91561 1.41917 1.06182 1.07456 1.66167 1.20360 0.89746 0.83924 0.82418 1.90520 1.70686 1.32156 1.56448 1.20797 0.89562 0.83155 1.05576 1.44463 1.04149 1.09597 1.78520 1.15475 0.82770 0.82122 0.78551 1.91073 1.55127 1.42880 1.55786 1.41036 1.00872 1.08788 1.77654 1.20409 0.87211 0.81017 1.08668 1.74829 0.94041 1.24205 1.19429 1.74818 1.16139 1.02921 1.24059 1.22788 0.82354 0.95314 1.05655 1.20682 0.99787 0.88510 1.03399 1.21800 0.96335 0.96906 0.93542 1.21593 0.92938 1.00098 0.99364 1.22543 1.03299 0.79263 1.03278 1.43563 1.08518 1.06248 1.50685 0.90932 0.77209 0.87607 0.87516 0.74566 0.72559 0.80907 0.79210 0.78181 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.96 21.66 0.30 -53.48 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 3 Si 0.96 38.01 27.74 68.60 1.90 39.91 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 7 C -0.33 -18.35 10.16 84.04 0.85 -17.50 16 8 H 0.07 4.34 7.39 -2.91 -0.02 4.32 16 9 N -0.58 -25.96 5.09 -306.98 -1.56 -27.53 16 10 C 0.45 18.79 7.85 87.66 0.69 19.48 16 11 O -0.61 -30.00 15.24 -3.05 -0.05 -30.05 16 12 C 0.14 4.36 6.15 85.63 0.53 4.89 16 13 N -0.71 -20.60 5.53 -482.30 -2.67 -23.27 16 14 C 0.71 22.01 8.53 179.05 1.53 23.54 16 15 O -0.57 -22.86 15.07 -3.99 -0.06 -22.92 16 16 N -0.63 -14.79 5.42 -324.99 -1.76 -16.56 16 17 C 0.38 10.74 8.72 259.72 2.26 13.00 16 18 N -0.28 -10.39 10.43 -57.51 -0.60 -10.99 16 19 N -0.33 -11.20 12.29 -55.19 -0.68 -11.87 16 20 C 0.19 4.43 7.93 134.02 1.06 5.49 16 21 C -0.10 -1.24 10.11 22.39 0.23 -1.02 16 22 C -0.06 -0.23 10.06 22.34 0.22 -0.01 16 23 C -0.12 -0.31 9.98 22.09 0.22 -0.09 16 24 C 0.04 0.31 11.00 83.16 0.92 1.23 16 25 N -0.40 -8.14 2.98 -353.26 -1.05 -9.20 16 26 H 0.28 14.98 8.31 -92.70 -0.77 14.21 16 27 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 28 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.42 11.23 7.45 -92.71 -0.69 10.54 16 31 H 0.43 6.09 8.84 -92.70 -0.82 5.27 16 32 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.19 -0.85 8.06 -2.91 -0.02 -0.87 16 34 H 0.20 -1.17 8.06 -2.91 -0.02 -1.20 16 35 H 0.20 0.28 8.06 -2.91 -0.02 0.26 16 Total: -1.00 -90.77 316.73 1.85 -88.92 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.91 Total: 27.94 kcal Atomic # 6 Polarization: 40.12 SS G_CDS: 8.98 Total: 49.09 kcal Atomic # 7 Polarization: -144.88 SS G_CDS: -8.02 Total: -152.90 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.11 Total: -52.97 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -90.77 1.85 -88.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349379499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.977 kcal (2) G-P(sol) polarization free energy of solvation -90.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds