Wall clock time and date at job start Fri Apr 10 2020 14:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99787 * 2 1 4 4 H 1.48498 * 109.46960 * 270.00009 * 3 2 1 5 5 H 1.48501 * 109.46992 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.46908 * 149.99949 * 3 2 1 7 7 C 1.37873 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.34963 * 125.97640 * 125.01465 * 10 9 7 12 12 C 1.35250 * 107.85846 * 179.73173 * 11 10 9 13 13 C 1.40393 * 107.86428 * 0.37373 * 12 11 10 14 14 N 1.40200 * 125.97039 * 179.88933 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.70966 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 C 1.52999 * 109.47192 * 180.02562 * 18 17 15 20 20 H 1.09008 * 109.46756 * 304.99967 * 19 18 17 21 21 O 1.42895 * 109.47498 * 64.99545 * 19 18 17 22 22 C 1.53001 * 109.47159 * 185.00359 * 19 18 17 23 23 F 1.39896 * 109.47183 * 59.99471 * 22 19 18 24 24 F 1.39904 * 109.47012 * 179.97438 * 22 19 18 25 25 N 1.31201 * 108.05829 * 359.62509 * 13 12 11 26 26 H 0.97001 * 119.99988 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47301 * 59.99775 * 9 7 2 28 28 H 1.09004 * 109.47393 * 300.00102 * 9 7 2 29 29 H 1.08004 * 126.07213 * 359.97438 * 11 10 9 30 30 H 1.08000 * 126.06412 * 180.24511 * 12 11 10 31 31 H 0.97000 * 120.00293 * 179.71658 * 14 13 12 32 32 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 33 33 H 1.09003 * 109.46699 * 299.99993 * 18 17 15 34 34 H 1.08993 * 109.47199 * 60.00006 * 18 17 15 35 35 H 0.96701 * 113.99770 * 60.00567 * 21 19 18 36 36 H 1.09002 * 109.46799 * 299.99081 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 2.2426 -4.6221 0.8964 12 6 3.2573 -5.4457 0.5481 13 6 3.8677 -4.9154 -0.5997 14 7 4.9625 -5.4673 -1.2797 15 6 5.5269 -6.6076 -0.8350 16 8 5.0862 -7.1579 0.1557 17 7 6.5828 -7.1351 -1.4855 18 6 7.2000 -8.3714 -0.9987 19 6 8.3694 -8.7507 -1.9095 20 1 8.0208 -8.8155 -2.9403 21 8 9.3902 -7.7553 -1.8136 22 6 8.9349 -10.1047 -1.4763 23 9 7.9355 -11.0791 -1.5702 24 9 10.0039 -10.4518 -2.3095 25 7 3.2310 -3.8162 -0.9280 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 1.5791 -4.7515 1.7387 30 1 3.5478 -6.3495 1.0628 31 1 5.3139 -5.0285 -2.0701 32 1 6.9342 -6.6963 -2.2760 33 1 7.5654 -8.2195 0.0170 34 1 6.4610 -9.1726 -1.0030 35 1 9.7477 -7.6432 -0.9222 36 1 9.2835 -10.0398 -0.4455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428898171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:13 Heat of formation + Delta-G solvation = -123.787554 kcal Electronic energy + Delta-G solvation = -23783.948999 eV Core-core repulsion = 19554.003283 eV Total energy + Delta-G solvation = -4229.945716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97545 -48.00451 -42.21811 -40.94889 -38.78233 -36.26323 -35.51715 -35.21122 -32.79511 -31.32966 -30.88284 -28.59030 -26.83507 -24.93709 -23.40943 -22.91841 -21.95451 -21.26943 -19.33571 -18.93052 -18.72930 -18.65732 -18.17251 -17.98238 -17.13505 -16.94450 -16.37349 -16.25149 -16.14103 -15.67402 -15.48256 -15.20829 -14.86101 -14.46708 -14.35908 -14.28018 -14.12305 -13.78921 -13.77033 -13.47922 -13.27344 -12.92126 -12.73081 -12.28295 -12.08886 -12.05166 -11.64956 -11.39866 -11.29367 -11.09810 -10.71511 -10.29146 -9.71663 -9.04856 -8.31891 -6.46060 1.05707 1.10963 1.38983 1.39827 1.51203 1.70404 2.04191 2.35994 2.40706 2.64557 2.96425 2.99756 3.20843 3.30750 3.38349 3.68372 3.98470 4.09671 4.12919 4.29567 4.58218 4.73147 4.79433 4.91499 4.96038 5.03113 5.10937 5.37394 5.57710 5.75744 5.87428 5.98012 6.30563 6.56663 6.64350 6.74283 7.14679 7.23886 7.39947 8.75540 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.002319 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.217902 B =12070.681569 C =12712.621785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.284 3.716 14 N -0.636 5.636 15 C 0.713 3.287 16 O -0.599 6.599 17 N -0.718 5.718 18 C 0.108 3.892 19 C 0.066 3.934 20 H 0.128 0.872 21 O -0.546 6.546 22 C 0.235 3.765 23 F -0.210 7.210 24 F -0.210 7.210 25 N -0.348 5.348 26 H 0.272 0.728 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.201 0.799 30 H 0.168 0.832 31 H 0.421 0.579 32 H 0.416 0.584 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.612 -18.866 -1.847 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.028 3.972 14 N -0.288 5.288 15 C 0.413 3.587 16 O -0.477 6.477 17 N -0.375 5.375 18 C -0.016 4.016 19 C 0.005 3.995 20 H 0.145 0.855 21 O -0.355 6.355 22 C 0.181 3.819 23 F -0.192 7.192 24 F -0.191 7.191 25 N -0.179 5.179 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.218 0.782 30 H 0.186 0.814 31 H 0.258 0.742 32 H 0.253 0.747 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.252 0.748 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.825 -18.195 -2.429 25.586 hybrid contribution 0.415 0.489 0.180 0.667 sum 18.240 -17.706 -2.249 25.520 Atomic orbital electron populations 1.69995 1.07217 1.28749 1.50014 1.25747 0.95852 1.02749 0.93941 0.85342 0.78378 0.78126 0.78531 1.19830 1.19736 1.19676 1.21400 0.93382 0.90967 1.52704 0.92928 1.19331 0.85679 0.81525 0.98089 1.48820 1.23965 1.20415 1.19581 1.23174 1.00539 0.88827 0.96739 1.21686 1.02145 1.06480 1.01967 1.19082 0.90906 0.93005 0.94201 1.41354 1.30530 1.25329 1.31558 1.15709 0.80551 0.79693 0.82776 1.90851 1.65660 1.63087 1.28102 1.44609 1.31916 1.28039 1.32937 1.21901 0.95050 0.86127 0.98552 1.22978 0.87495 0.86252 1.02767 0.85470 1.86715 1.54562 1.56736 1.37474 1.22913 0.76423 0.85526 0.97027 1.93004 1.62622 1.66074 1.97478 1.93004 1.57342 1.93109 1.75690 1.77241 1.04950 1.18208 1.17522 0.91857 0.96124 0.92338 0.78230 0.81429 0.74188 0.74718 0.89105 0.90019 0.74760 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.14 13.29 21.45 0.28 -51.86 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.55 -30.78 9.24 25.60 0.24 -30.54 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.14 6.26 85.63 0.54 14.67 16 10 N -0.35 -16.23 3.67 -351.84 -1.29 -17.52 16 11 C 0.06 2.18 11.44 83.52 0.96 3.14 16 12 C -0.29 -11.30 9.61 22.11 0.21 -11.09 16 13 C 0.28 11.18 8.11 133.31 1.08 12.26 16 14 N -0.64 -18.48 5.46 -321.24 -1.75 -20.23 16 15 C 0.71 18.62 8.53 179.05 1.53 20.15 16 16 O -0.60 -19.71 13.47 -4.01 -0.05 -19.76 16 17 N -0.72 -11.07 5.51 -478.52 -2.64 -13.70 16 18 C 0.11 1.18 5.25 86.38 0.45 1.63 16 19 C 0.07 0.47 3.17 30.59 0.10 0.57 16 20 H 0.13 0.99 8.14 -2.38 -0.02 0.97 16 21 O -0.55 -3.94 13.23 -148.98 -1.97 -5.91 16 22 C 0.24 1.71 4.99 71.98 0.36 2.07 16 23 F -0.21 -2.67 16.73 44.97 0.75 -1.92 16 24 F -0.21 -2.75 17.28 44.97 0.78 -1.97 16 25 N -0.35 -16.10 12.42 -54.44 -0.68 -16.77 16 26 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 2.96 8.07 -2.38 -0.02 2.94 16 29 H 0.20 6.18 8.06 -2.91 -0.02 6.15 16 30 H 0.17 6.28 5.91 -2.91 -0.02 6.26 16 31 H 0.42 9.72 8.84 -92.71 -0.82 8.90 16 32 H 0.42 4.52 8.49 -92.71 -0.79 3.73 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 35 H 0.40 -0.11 9.05 -74.06 -0.67 -0.78 16 36 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -75.74 328.71 0.28 -75.46 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -1.10 Total: 14.42 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.92 Total: 14.29 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.07 Total: -120.09 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -2.02 Total: -25.68 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 1.53 Total: -3.89 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.74 0.28 -75.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428898171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.323 kcal (2) G-P(sol) polarization free energy of solvation -75.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds