Wall clock time and date at job start Fri Apr 10 2020 14:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99693 * 2 1 4 4 H 1.48502 * 109.47303 * 239.99807 * 3 2 1 5 5 H 1.48498 * 109.47708 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47083 * 120.00319 * 3 2 1 7 7 C 1.37869 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00276 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46991 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97624 * 125.02899 * 10 9 7 12 12 C 1.35244 * 107.85999 * 179.97438 * 11 10 9 13 13 C 1.40401 * 107.86868 * 359.97438 * 12 11 10 14 14 N 1.40193 * 125.97600 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99728 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99982 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.46509 * 119.99703 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46837 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.47331 * 60.00143 * 19 18 17 21 21 O 1.42899 * 109.47338 * 300.00023 * 19 18 17 22 22 C 1.53004 * 109.46965 * 180.02562 * 19 18 17 23 23 F 1.39900 * 109.47044 * 185.00113 * 22 19 18 24 24 F 1.39892 * 109.46965 * 304.99942 * 22 19 18 25 25 N 1.31214 * 108.05413 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00114 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46761 * 59.99913 * 9 7 2 28 28 H 1.08999 * 109.46517 * 300.00031 * 9 7 2 29 29 H 1.07999 * 126.06908 * 359.96859 * 11 10 9 30 30 H 1.07998 * 126.06683 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00586 * 179.97438 * 14 13 12 32 32 H 0.96999 * 120.00560 * 359.97438 * 17 15 14 33 33 H 1.09000 * 109.47295 * 299.99904 * 18 17 15 34 34 H 1.08996 * 109.46572 * 60.00480 * 18 17 15 35 35 H 0.96697 * 114.00697 * 300.00342 * 21 19 18 36 36 H 1.08997 * 109.46690 * 65.00419 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2418 -4.6226 0.8938 12 6 3.2602 -5.4430 0.5492 13 6 3.8682 -4.9152 -0.6011 14 7 4.9644 -5.4659 -1.2796 15 6 5.5289 -6.6059 -0.8346 16 8 5.0878 -7.1565 0.1557 17 7 6.5825 -7.1357 -1.4872 18 6 7.1965 -8.3746 -1.0031 19 6 8.3636 -8.7560 -1.9159 20 1 9.1050 -7.9569 -1.9109 21 8 7.8829 -8.9512 -3.2474 22 6 9.0044 -10.0502 -1.4107 23 9 10.1399 -10.3379 -2.1757 24 9 9.3723 -9.8958 -0.0699 25 7 3.2310 -3.8163 -0.9300 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 1.5775 -4.7526 1.7354 30 1 3.5538 -6.3442 1.0668 31 1 5.3161 -5.0269 -2.0699 32 1 6.9342 -6.6967 -2.2775 33 1 7.5636 -8.2256 0.0124 34 1 6.4550 -9.1735 -1.0078 35 1 7.2183 -9.6491 -3.3274 36 1 8.2896 -10.8683 -1.4996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428898174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:16 Heat of formation + Delta-G solvation = -95.788978 kcal Electronic energy + Delta-G solvation = -23790.670615 eV Core-core repulsion = 19561.939008 eV Total energy + Delta-G solvation = -4228.731607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.52089 -47.52974 -40.77870 -39.74156 -38.24938 -34.93748 -34.54982 -33.33598 -31.28630 -30.48082 -29.29787 -26.90135 -26.00861 -23.21915 -22.77008 -21.74993 -20.44926 -19.90346 -18.42008 -18.35897 -18.21460 -17.52919 -16.74361 -16.57456 -16.16381 -15.75963 -15.61973 -15.16952 -14.77343 -14.44456 -14.30256 -14.20645 -13.90429 -13.84963 -13.65222 -13.00803 -12.83218 -12.80186 -12.32494 -12.22073 -11.77814 -11.70662 -11.07634 -10.88109 -10.86018 -10.47195 -10.25900 -10.14301 -9.73620 -9.53293 -9.40615 -8.62841 -8.12214 -7.43728 -6.24149 -4.29290 2.15607 2.62276 3.02886 3.06311 3.25624 3.28870 3.29533 3.33728 3.53576 3.66833 3.75947 3.80582 4.05998 4.26032 4.35877 4.49941 4.54730 5.10885 5.15385 5.19249 5.51188 5.78411 6.04232 6.22101 6.50390 6.53158 6.71937 6.84860 6.97987 7.08710 7.46335 7.68951 7.79713 7.93934 8.05776 8.49983 8.64755 8.80281 9.36275 10.84524 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.002300 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.829062 B =12168.772982 C =12531.239525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.274 3.726 14 N -0.641 5.641 15 C 0.715 3.285 16 O -0.567 6.567 17 N -0.739 5.739 18 C 0.110 3.890 19 C 0.050 3.950 20 H 0.131 0.869 21 O -0.536 6.536 22 C 0.239 3.761 23 F -0.195 7.195 24 F -0.195 7.195 25 N -0.306 5.306 26 H 0.268 0.732 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.408 0.592 32 H 0.403 0.597 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 -20.156 -4.162 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.020 3.980 14 N -0.291 5.291 15 C 0.414 3.586 16 O -0.442 6.442 17 N -0.397 5.397 18 C -0.015 4.015 19 C -0.011 4.011 20 H 0.148 0.852 21 O -0.342 6.342 22 C 0.185 3.815 23 F -0.177 7.177 24 F -0.177 7.177 25 N -0.138 5.138 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.185 0.815 30 H 0.178 0.822 31 H 0.243 0.757 32 H 0.238 0.762 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.707 -19.002 -4.181 24.390 hybrid contribution 0.535 0.270 -0.002 0.599 sum 15.242 -18.732 -4.183 24.509 Atomic orbital electron populations 1.69907 1.06033 1.27733 1.49710 1.24943 0.94991 0.99540 0.94613 0.86382 0.79373 0.81788 0.78917 1.19946 1.21048 1.20052 1.21219 0.93956 0.89405 1.52132 0.91369 1.19736 0.85603 0.81274 0.99258 1.49067 1.23275 1.19726 1.18125 1.22562 1.00317 0.90206 0.96788 1.21499 1.02030 1.06476 1.01774 1.18774 0.90690 0.94155 0.94370 1.41323 1.31465 1.24940 1.31373 1.15547 0.79929 0.80278 0.82861 1.90882 1.64377 1.62406 1.26534 1.44715 1.34247 1.27618 1.33157 1.21716 0.94143 0.87252 0.98419 1.23234 0.97017 0.96770 0.84053 0.85156 1.86725 1.61808 1.60539 1.25106 1.22569 0.85270 0.99971 0.73724 1.93035 1.54512 1.94655 1.75453 1.93033 1.92934 1.96879 1.34814 1.77333 1.03869 1.16232 1.16317 0.92272 0.93737 0.92526 0.81494 0.82207 0.75744 0.76203 0.89195 0.90330 0.76650 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 13.29 55.43 0.74 -24.55 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.56 6.26 -5.19 -0.03 6.52 16 10 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.65 9.61 -39.83 -0.38 -6.04 16 13 C 0.27 5.45 8.11 -154.36 -1.25 4.20 16 14 N -0.64 -9.65 5.46 -15.51 -0.08 -9.73 16 15 C 0.71 9.87 8.53 -86.92 -0.74 9.13 16 16 O -0.57 -9.71 13.47 5.29 0.07 -9.64 16 17 N -0.74 -6.47 5.45 -65.22 -0.36 -6.82 16 18 C 0.11 0.73 5.17 -4.04 -0.02 0.71 16 19 C 0.05 0.24 3.24 -26.73 -0.09 0.15 16 20 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 21 O -0.54 -2.51 13.08 -35.23 -0.46 -2.97 16 22 C 0.24 1.13 5.02 37.16 0.19 1.32 16 23 F -0.20 -1.44 17.33 2.25 0.04 -1.40 16 24 F -0.20 -1.39 16.62 2.25 0.04 -1.36 16 25 N -0.31 -7.01 12.42 31.44 0.39 -6.62 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 30 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 31 H 0.41 4.95 8.84 -40.82 -0.36 4.59 16 32 H 0.40 2.68 8.36 -40.82 -0.34 2.34 16 33 H 0.09 0.71 7.68 -51.93 -0.40 0.31 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.38 0.42 9.04 45.56 0.41 0.84 16 36 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -35.01 328.36 -5.95 -40.96 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.08 Total: 5.10 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.94 Total: 3.42 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.46 Total: -55.37 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.39 Total: -12.60 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.01 -5.95 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428898174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.830 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds