Wall clock time and date at job start Fri Apr 10 2020 14:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99693 * 2 1 4 4 H 1.48502 * 109.47303 * 239.99807 * 3 2 1 5 5 H 1.48498 * 109.47708 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47083 * 120.00319 * 3 2 1 7 7 C 1.37869 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00276 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46991 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97624 * 125.02899 * 10 9 7 12 12 C 1.35244 * 107.85999 * 179.97438 * 11 10 9 13 13 C 1.40401 * 107.86868 * 359.97438 * 12 11 10 14 14 N 1.40193 * 125.97600 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99728 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99982 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.46509 * 119.99703 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46837 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.47331 * 60.00143 * 19 18 17 21 21 O 1.42899 * 109.47338 * 300.00023 * 19 18 17 22 22 C 1.53004 * 109.46965 * 180.02562 * 19 18 17 23 23 F 1.39900 * 109.47044 * 185.00113 * 22 19 18 24 24 F 1.39892 * 109.46965 * 304.99942 * 22 19 18 25 25 N 1.31214 * 108.05413 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00114 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46761 * 59.99913 * 9 7 2 28 28 H 1.08999 * 109.46517 * 300.00031 * 9 7 2 29 29 H 1.07999 * 126.06908 * 359.96859 * 11 10 9 30 30 H 1.07998 * 126.06683 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00586 * 179.97438 * 14 13 12 32 32 H 0.96999 * 120.00560 * 359.97438 * 17 15 14 33 33 H 1.09000 * 109.47295 * 299.99904 * 18 17 15 34 34 H 1.08996 * 109.46572 * 60.00480 * 18 17 15 35 35 H 0.96697 * 114.00697 * 300.00342 * 21 19 18 36 36 H 1.08997 * 109.46690 * 65.00419 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2418 -4.6226 0.8938 12 6 3.2602 -5.4430 0.5492 13 6 3.8682 -4.9152 -0.6011 14 7 4.9644 -5.4659 -1.2796 15 6 5.5289 -6.6059 -0.8346 16 8 5.0878 -7.1565 0.1557 17 7 6.5825 -7.1357 -1.4872 18 6 7.1965 -8.3746 -1.0031 19 6 8.3636 -8.7560 -1.9159 20 1 9.1050 -7.9569 -1.9109 21 8 7.8829 -8.9512 -3.2474 22 6 9.0044 -10.0502 -1.4107 23 9 10.1399 -10.3379 -2.1757 24 9 9.3723 -9.8958 -0.0699 25 7 3.2310 -3.8163 -0.9300 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 1.5775 -4.7526 1.7354 30 1 3.5538 -6.3442 1.0668 31 1 5.3161 -5.0269 -2.0699 32 1 6.9342 -6.6967 -2.2775 33 1 7.5636 -8.2256 0.0124 34 1 6.4550 -9.1735 -1.0078 35 1 7.2183 -9.6491 -3.3274 36 1 8.2896 -10.8683 -1.4996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428898174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:16 Heat of formation + Delta-G solvation = -123.533141 kcal Electronic energy + Delta-G solvation = -23791.873692 eV Core-core repulsion = 19561.939008 eV Total energy + Delta-G solvation = -4229.934684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97789 -48.00703 -42.21683 -40.94971 -38.79024 -36.26075 -35.50103 -35.20742 -32.79284 -31.32917 -30.88222 -28.58993 -26.84919 -24.93883 -23.40475 -22.89693 -21.95313 -21.27008 -19.33639 -18.93019 -18.74319 -18.65359 -18.16906 -17.97886 -17.10698 -16.97106 -16.38013 -16.28416 -16.04180 -15.76690 -15.44903 -15.22229 -14.86251 -14.46990 -14.35442 -14.26514 -14.13311 -13.78938 -13.77282 -13.48209 -13.23442 -12.93442 -12.71811 -12.27309 -12.10331 -12.06574 -11.64414 -11.40897 -11.29063 -11.10451 -10.71208 -10.29040 -9.71631 -9.04759 -8.31839 -6.46024 1.05379 1.11294 1.39015 1.40791 1.49618 1.70390 2.04318 2.35955 2.40705 2.64412 2.95499 2.99764 3.21195 3.30767 3.39465 3.68395 3.98506 4.09750 4.12872 4.29624 4.58980 4.73709 4.79411 4.91490 4.96074 5.03284 5.10955 5.37295 5.57484 5.75964 5.87604 5.98080 6.30555 6.56696 6.64229 6.74565 7.14790 7.23813 7.40190 8.75390 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.002300 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.829062 B =12168.772982 C =12531.239525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.284 3.716 14 N -0.636 5.636 15 C 0.713 3.287 16 O -0.599 6.599 17 N -0.717 5.717 18 C 0.108 3.892 19 C 0.067 3.933 20 H 0.127 0.873 21 O -0.546 6.546 22 C 0.236 3.764 23 F -0.211 7.211 24 F -0.211 7.211 25 N -0.348 5.348 26 H 0.273 0.727 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.201 0.799 30 H 0.168 0.832 31 H 0.421 0.579 32 H 0.416 0.584 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.119 -20.914 -4.410 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.028 3.972 14 N -0.288 5.288 15 C 0.413 3.587 16 O -0.477 6.477 17 N -0.375 5.375 18 C -0.016 4.016 19 C 0.006 3.994 20 H 0.145 0.855 21 O -0.354 6.354 22 C 0.181 3.819 23 F -0.192 7.192 24 F -0.192 7.192 25 N -0.179 5.179 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.218 0.782 30 H 0.186 0.814 31 H 0.258 0.742 32 H 0.253 0.747 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.253 0.747 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 15.879 -19.803 -4.469 25.774 hybrid contribution 0.251 0.352 0.044 0.435 sum 16.130 -19.451 -4.424 25.653 Atomic orbital electron populations 1.69986 1.07192 1.28816 1.49929 1.25735 0.95853 1.02710 0.93933 0.85411 0.78287 0.77896 0.78899 1.19832 1.19820 1.19522 1.21375 0.93375 0.91001 1.52822 0.92959 1.19325 0.85671 0.81490 0.98098 1.48820 1.23965 1.20349 1.19646 1.23170 1.00513 0.88851 0.96735 1.21684 1.02042 1.06662 1.01891 1.19086 0.90893 0.93036 0.94177 1.41351 1.30403 1.25399 1.31604 1.15709 0.80594 0.79720 0.82716 1.90852 1.65619 1.63151 1.28097 1.44590 1.32323 1.27822 1.32717 1.21877 0.95011 0.86388 0.98373 1.22976 0.95935 0.96845 0.83685 0.85517 1.86710 1.62527 1.61481 1.24678 1.22944 0.85147 1.01212 0.72553 1.93003 1.55599 1.94755 1.75839 1.93004 1.93118 1.97024 1.36055 1.77250 1.05006 1.18131 1.17530 0.91843 0.96066 0.92359 0.78239 0.81448 0.74185 0.74668 0.90203 0.89108 0.74726 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.15 13.29 21.44 0.28 -51.86 16 2 C 0.02 1.00 5.46 84.65 0.46 1.46 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -30.90 9.24 25.60 0.24 -30.66 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 14.16 6.26 85.64 0.54 14.69 16 10 N -0.35 -16.22 3.67 -351.84 -1.29 -17.51 16 11 C 0.06 2.19 11.44 83.52 0.96 3.14 16 12 C -0.29 -11.31 9.61 22.11 0.21 -11.09 16 13 C 0.28 11.18 8.11 133.31 1.08 12.26 16 14 N -0.64 -18.47 5.46 -321.23 -1.75 -20.23 16 15 C 0.71 18.64 8.53 179.05 1.53 20.17 16 16 O -0.60 -19.79 13.47 -4.00 -0.05 -19.84 16 17 N -0.72 -11.07 5.45 -478.52 -2.61 -13.67 16 18 C 0.11 1.20 5.17 86.38 0.45 1.65 16 19 C 0.07 0.48 3.24 30.59 0.10 0.57 16 20 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 21 O -0.55 -3.62 13.08 -148.98 -1.95 -5.57 16 22 C 0.24 1.71 5.02 71.98 0.36 2.07 16 23 F -0.21 -2.75 17.33 44.97 0.78 -1.97 16 24 F -0.21 -2.70 16.62 44.97 0.75 -1.96 16 25 N -0.35 -16.09 12.42 -54.43 -0.68 -16.77 16 26 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 29 H 0.20 6.18 8.06 -2.91 -0.02 6.16 16 30 H 0.17 6.28 5.91 -2.91 -0.02 6.27 16 31 H 0.42 9.72 8.84 -92.71 -0.82 8.90 16 32 H 0.42 4.54 8.36 -92.71 -0.78 3.76 16 33 H 0.08 1.13 7.68 -2.39 -0.02 1.11 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.40 -0.38 9.04 -74.06 -0.67 -1.05 16 36 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -75.67 328.36 0.33 -75.33 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -1.09 Total: 14.22 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.92 Total: 14.26 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.04 Total: -120.05 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -2.00 Total: -25.41 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 1.53 Total: -3.93 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -75.67 0.33 -75.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428898174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.200 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds