Wall clock time and date at job start Fri Apr 10 2020 14:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 O 1.21279 * 120.00178 * 99.99093 * 14 11 10 16 16 N 1.34776 * 119.99790 * 280.00489 * 14 11 10 17 17 C 1.46504 * 119.99805 * 179.97438 * 16 14 11 18 18 C 1.53005 * 109.46974 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.38028 * 60.22080 * 18 17 16 20 20 C 1.52635 * 109.38348 * 180.02562 * 18 17 16 21 21 S 1.81174 * 109.99448 * 187.01181 * 20 18 17 22 22 C 1.81175 * 103.31298 * 297.38951 * 21 20 18 23 23 C 1.52635 * 109.99602 * 62.61157 * 22 21 20 24 24 S 1.81165 * 109.38551 * 300.53648 * 18 17 16 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 31 31 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 32 32 H 0.97003 * 120.00282 * 359.97438 * 16 14 11 33 33 H 1.08999 * 109.47420 * 300.00041 * 17 16 14 34 34 H 1.09003 * 109.46804 * 60.00094 * 17 16 14 35 35 H 1.09000 * 109.38772 * 307.17405 * 20 18 17 36 36 H 1.09001 * 109.38363 * 66.85280 * 20 18 17 37 37 H 1.08995 * 109.38291 * 182.77594 * 22 21 20 38 38 H 1.09005 * 109.38418 * 302.56030 * 22 21 20 39 39 H 1.09005 * 109.38061 * 53.30642 * 23 22 21 40 40 H 1.09000 * 109.38714 * 173.09670 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 1 0.7879 -5.0072 -0.8396 13 7 0.7291 -5.1184 1.2575 14 6 2.4549 -6.1299 -0.1220 15 8 2.7872 -6.7532 0.8638 16 7 2.9573 -6.4591 -1.3285 17 6 3.9051 -7.5697 -1.4490 18 6 4.3167 -7.7323 -2.9137 19 1 4.7908 -6.8140 -3.2602 20 6 5.3036 -8.8902 -3.0370 21 16 5.9597 -8.9679 -4.7240 22 6 4.4888 -9.2977 -5.7290 23 6 3.5019 -8.1399 -5.6056 24 16 2.8460 -8.0629 -3.9185 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 1.3493 -5.1024 2.0533 31 1 0.0243 -4.4003 1.3340 32 1 2.6914 -5.9607 -2.1171 33 1 4.7877 -7.3615 -0.8442 34 1 3.4341 -8.4888 -1.1002 35 1 6.1249 -8.7419 -2.3359 36 1 4.7949 -9.8255 -2.8033 37 1 4.7820 -9.4136 -6.7723 38 1 4.0126 -10.2152 -5.3830 39 1 4.0106 -7.2046 -5.8393 40 1 2.6797 -8.2891 -6.3054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709480577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:22 Heat of formation + Delta-G solvation = -57.396164 kcal Electronic energy + Delta-G solvation = -20284.912877 eV Core-core repulsion = 17157.979708 eV Total energy + Delta-G solvation = -3126.933169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66079 -36.39019 -35.33586 -33.90592 -32.85767 -32.59577 -29.88255 -27.65566 -25.82228 -24.37474 -23.68464 -22.40051 -20.72369 -19.74394 -17.87852 -17.25682 -17.02231 -16.23728 -16.07095 -15.82365 -14.88179 -14.75519 -14.56320 -14.47274 -14.18388 -14.11473 -13.75911 -13.46975 -13.15025 -13.12861 -12.92495 -12.63670 -12.15960 -11.96658 -11.65435 -11.21153 -11.07776 -10.93116 -10.71197 -10.67873 -10.11674 -9.98772 -9.91999 -9.29736 -9.21240 -9.04194 -8.44131 -8.42535 -8.17903 -8.11566 -6.08571 -4.11715 1.02029 1.15061 1.83661 2.04006 2.93014 3.19734 3.26782 3.33690 3.36970 4.07805 4.15132 4.26725 4.39311 4.46601 4.50708 4.74297 4.89314 5.04972 5.06979 5.13118 5.19605 5.21741 5.27682 5.37473 5.55198 5.61523 5.77415 6.28970 6.42562 6.52294 6.87707 7.43007 7.52016 7.61498 7.69210 7.88476 7.92055 8.31050 8.44351 8.94270 9.53165 11.02323 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.002943 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.254017 B = 9510.573089 C =10238.734881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.539 6.539 16 N -0.732 5.732 17 C 0.145 3.855 18 C -0.073 4.073 19 H 0.109 0.891 20 C -0.083 4.083 21 S -0.246 6.246 22 C -0.090 4.090 23 C -0.097 4.097 24 S -0.226 6.226 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.345 0.655 31 H 0.354 0.646 32 H 0.406 0.594 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -19.159 -11.689 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.415 6.415 16 N -0.387 5.387 17 C 0.018 3.982 18 C -0.204 4.204 19 H 0.127 0.873 20 C -0.233 4.233 21 S -0.018 6.018 22 C -0.240 4.240 23 C -0.247 4.247 24 S 0.002 5.998 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.242 0.758 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.414 -20.228 -11.269 24.636 hybrid contribution 0.749 2.179 -0.356 2.332 sum 9.164 -18.048 -11.625 23.342 Atomic orbital electron populations 1.69946 1.06015 1.26783 1.50431 1.25011 0.94865 0.99292 0.95137 0.86588 0.79867 0.83387 0.78144 1.20611 1.21151 1.19888 1.21183 0.93011 0.90910 1.51117 0.92733 1.19103 0.93720 0.91082 0.97389 1.22378 0.99872 0.93977 1.01435 1.21465 0.94683 0.92174 0.95655 0.88471 1.58743 1.18450 1.55911 1.03159 1.20904 0.80975 0.84431 0.82212 1.90633 1.60216 1.53510 1.37140 1.46007 1.47050 1.35028 1.10602 1.21021 0.94126 0.91495 0.91516 1.23680 0.96446 1.01810 0.98496 0.87270 1.23539 1.02322 1.00968 0.96520 1.86932 1.16644 1.94619 1.03555 1.23568 0.96213 1.01041 1.03199 1.23609 1.02578 1.01509 0.97006 1.87232 1.15689 1.94438 1.02459 0.92875 0.96289 0.96382 0.92572 0.92701 0.84180 0.83024 0.75776 0.89856 0.90534 0.86111 0.88081 0.86547 0.88451 0.88309 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.67 4.78 -26.73 -0.13 -2.80 16 11 C 0.08 1.29 3.21 -68.86 -0.22 1.07 16 12 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16 13 N -0.83 -14.46 8.94 -5.65 -0.05 -14.51 16 14 C 0.53 8.68 7.08 -10.99 -0.08 8.60 16 15 O -0.54 -10.42 16.25 5.56 0.09 -10.33 16 16 N -0.73 -9.32 5.26 -60.29 -0.32 -9.64 16 17 C 0.15 1.52 5.10 -4.04 -0.02 1.50 16 18 C -0.07 -0.60 2.50 -26.92 -0.07 -0.67 16 19 H 0.11 0.92 8.14 -51.91 -0.42 0.50 16 20 C -0.08 -0.58 5.53 36.97 0.20 -0.38 16 21 S -0.25 -1.90 22.05 -107.50 -2.37 -4.27 16 22 C -0.09 -0.52 6.25 36.97 0.23 -0.29 16 23 C -0.10 -0.62 6.25 36.97 0.23 -0.38 16 24 S -0.23 -2.00 20.56 -107.50 -2.21 -4.21 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 31 H 0.35 6.17 7.55 -39.29 -0.30 5.88 16 32 H 0.41 4.72 7.94 -40.82 -0.32 4.40 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 0.74 8.13 -51.92 -0.42 0.32 16 36 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.12 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.10 0.55 8.14 -51.91 -0.42 0.13 16 39 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.12 0.60 8.14 -51.91 -0.42 0.18 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -31.53 350.06 -10.61 -42.13 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.35 Total: 10.64 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.39 Total: -6.03 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.37 Total: -49.42 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -4.58 Total: -8.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.53 -10.61 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709480577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.261 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds